Wall clock time and date at job start Mon Mar 30 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.46894 * 2 1 4 4 C 1.46501 * 119.99793 * 270.00037 * 3 2 1 5 5 C 1.50696 * 109.46940 * 269.99885 * 4 3 2 6 6 H 1.08000 * 120.00267 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99900 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99677 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00186 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47259 * 89.99601 * 9 7 5 11 11 H 1.48503 * 109.47449 * 210.00250 * 9 7 5 12 12 H 1.48510 * 109.47068 * 330.00053 * 9 7 5 13 13 C 1.34766 * 120.00193 * 89.99470 * 3 2 1 14 14 O 1.21281 * 120.00078 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00402 * 0.02562 * 13 3 2 16 16 O 1.42896 * 109.47766 * 179.97438 * 15 13 3 17 17 C 1.42896 * 114.00446 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46906 * 89.99887 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 209.99746 * 17 16 15 23 23 H 1.09001 * 109.47263 * 299.99854 * 1 2 3 24 24 H 1.08997 * 109.47260 * 60.00783 * 1 2 3 25 25 H 1.09007 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47452 * 239.99788 * 2 1 3 27 27 H 1.08997 * 109.47260 * 119.99217 * 2 1 3 28 28 H 1.09002 * 109.47064 * 29.99472 * 4 3 2 29 29 H 1.09001 * 109.47382 * 149.99665 * 4 3 2 30 30 H 0.97005 * 119.99829 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47429 * 59.99113 * 15 13 3 32 32 H 1.09000 * 109.46801 * 299.99642 * 15 13 3 33 33 H 1.09002 * 109.46984 * 330.00066 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1489 2.3897 -2.8780 8 7 5.3909 2.1827 -3.2579 9 14 3.0127 3.4351 -3.9293 10 1 3.1160 4.8555 -3.5083 11 1 3.4055 3.3118 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2428 2.0167 1.1671 14 8 2.6474 3.1600 1.1671 15 6 1.9921 1.3062 2.4723 16 8 2.3020 2.1816 3.5584 17 6 2.0971 1.6023 4.8485 18 6 3.3838 0.9143 5.3088 19 6 3.1647 0.2946 6.6904 20 6 2.7882 1.3921 7.6878 21 6 1.5014 2.0801 7.2275 22 6 1.7204 2.6994 5.8462 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.5816 1.6876 -2.0284 29 1 2.0953 3.1411 -1.1385 30 1 5.7170 2.5731 -4.0838 31 1 2.6226 0.4189 2.5299 32 1 0.9443 1.0117 2.5302 33 1 1.2925 0.8690 4.7939 34 1 3.6523 0.1328 4.5981 35 1 4.1884 1.6477 5.3634 36 1 4.0815 -0.1951 7.0185 37 1 2.3600 -0.4386 6.6362 38 1 3.5929 2.1254 7.7420 39 1 2.6316 0.9505 8.6719 40 1 1.2330 2.8616 7.9382 41 1 0.6968 1.3468 7.1732 42 1 2.5249 3.4327 5.9009 43 1 0.8036 3.1895 5.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:48 Heat of formation + Delta-G solvation = -101.786508 kcal Electronic energy + Delta-G solvation = -21243.025950 eV Core-core repulsion = 18094.596997 eV Total energy + Delta-G solvation = -3148.428952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.58385 -38.70413 -36.29632 -35.28358 -32.71584 -30.96867 -30.46234 -30.08240 -28.50824 -26.44043 -23.00469 -22.79341 -22.44846 -21.97567 -20.05430 -18.43495 -17.10722 -16.91125 -16.21875 -15.72732 -15.61737 -14.95097 -14.48567 -14.42977 -14.03493 -13.82058 -13.50546 -13.27771 -12.92072 -12.73281 -12.40525 -12.36264 -12.24607 -12.07058 -11.74905 -11.41266 -11.29814 -11.16786 -10.97993 -10.81955 -10.72484 -10.59197 -10.49061 -10.40806 -10.14047 -9.52126 -9.39082 -8.91295 -8.56754 -7.72257 -6.06638 -4.05288 3.24786 3.31461 3.35344 3.37753 3.39951 4.15159 4.41642 4.54449 4.56901 4.78928 4.93259 5.02930 5.09729 5.17020 5.17903 5.27384 5.29483 5.31805 5.33723 5.39798 5.45707 5.54821 5.61432 5.69996 5.81677 5.82206 5.93292 5.94772 6.02118 6.03991 6.12907 6.17234 6.24514 6.37373 6.69872 6.95452 7.22920 7.39995 7.63160 8.24475 8.49097 8.95253 9.01351 9.53578 11.06811 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.003983 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.096675 B = 7028.542928 C = 7295.790512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.218 3.782 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.047 3.953 16 O -0.355 6.355 17 C 0.089 3.911 18 C -0.144 4.144 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.117 4.117 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 -6.720 18.374 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.098 3.902 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.033 4.033 16 O -0.273 6.273 17 C 0.031 3.969 18 C -0.182 4.182 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.154 4.154 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.196 -5.858 18.186 21.657 hybrid contribution -0.471 0.099 -0.694 0.845 sum -10.667 -5.759 17.492 21.282 Atomic orbital electron populations 1.22250 0.96729 1.01620 1.02313 1.21467 0.93439 0.83861 1.03174 1.47887 1.64689 1.13406 1.06696 1.19650 0.97340 0.93420 0.79818 1.21341 0.95367 1.32941 1.07103 0.90751 1.24858 0.95016 0.95791 0.97361 1.69900 1.15141 1.45006 1.23564 0.86847 0.81441 0.81675 0.79703 1.19867 1.21077 1.19067 1.19958 0.79005 0.87125 0.84537 1.90693 1.44054 1.17846 1.86840 1.22373 1.00247 0.93459 0.87249 1.88070 1.88131 1.38623 1.12515 1.22131 0.96229 0.95104 0.83470 1.22069 0.98891 1.00547 0.96701 1.21494 1.01471 0.97761 0.94640 1.21585 0.97911 0.98170 0.98360 1.21493 0.97771 0.99930 0.96100 1.21567 1.02566 0.97845 0.93448 0.93041 0.92068 0.91899 0.89485 0.91583 0.95128 0.94562 0.92573 0.90945 0.91111 0.92411 0.91715 0.90820 0.91716 0.92047 0.91714 0.92017 0.91508 0.91981 0.90864 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.22 5.42 4.23 -5.19 -0.02 5.40 16 5 C -0.53 -15.44 9.94 -34.44 -0.34 -15.78 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.51 10.96 7.75 -10.99 -0.09 10.87 16 14 O -0.52 -13.83 16.08 -14.35 -0.23 -14.06 16 15 C 0.05 0.74 4.78 36.01 0.17 0.92 16 16 O -0.36 -6.02 9.52 -55.14 -0.52 -6.55 16 17 C 0.09 1.08 2.61 -26.73 -0.07 1.01 16 18 C -0.14 -1.60 5.54 -26.73 -0.15 -1.75 16 19 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.12 -0.94 5.92 -26.76 -0.16 -1.10 16 22 C -0.12 -1.26 5.57 -26.76 -0.15 -1.41 16 23 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 27 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.07 1.01 7.13 -51.93 -0.37 0.64 16 32 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 33 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 34 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -35.12 341.61 -8.44 -43.56 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.65 Total: -2.98 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.86 Total: -2.23 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.34 Total: -40.06 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.76 Total: -20.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.12 -8.44 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.229 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds