Wall clock time and date at job start Mon Mar 30 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.46894 * 2 1 4 4 C 1.46501 * 119.99793 * 270.00037 * 3 2 1 5 5 C 1.50696 * 109.46940 * 269.99885 * 4 3 2 6 6 H 1.08000 * 120.00267 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99900 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99677 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00186 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47259 * 89.99601 * 9 7 5 11 11 H 1.48503 * 109.47449 * 210.00250 * 9 7 5 12 12 H 1.48510 * 109.47068 * 330.00053 * 9 7 5 13 13 C 1.34766 * 120.00193 * 89.99470 * 3 2 1 14 14 O 1.21281 * 120.00078 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00402 * 0.02562 * 13 3 2 16 16 O 1.42896 * 109.47766 * 179.97438 * 15 13 3 17 17 C 1.42896 * 114.00446 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46906 * 89.99887 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 209.99746 * 17 16 15 23 23 H 1.09001 * 109.47263 * 299.99854 * 1 2 3 24 24 H 1.08997 * 109.47260 * 60.00783 * 1 2 3 25 25 H 1.09007 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47452 * 239.99788 * 2 1 3 27 27 H 1.08997 * 109.47260 * 119.99217 * 2 1 3 28 28 H 1.09002 * 109.47064 * 29.99472 * 4 3 2 29 29 H 1.09001 * 109.47382 * 149.99665 * 4 3 2 30 30 H 0.97005 * 119.99829 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47429 * 59.99113 * 15 13 3 32 32 H 1.09000 * 109.46801 * 299.99642 * 15 13 3 33 33 H 1.09002 * 109.46984 * 330.00066 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1489 2.3897 -2.8780 8 7 5.3909 2.1827 -3.2579 9 14 3.0127 3.4351 -3.9293 10 1 3.1160 4.8555 -3.5083 11 1 3.4055 3.3118 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2428 2.0167 1.1671 14 8 2.6474 3.1600 1.1671 15 6 1.9921 1.3062 2.4723 16 8 2.3020 2.1816 3.5584 17 6 2.0971 1.6023 4.8485 18 6 3.3838 0.9143 5.3088 19 6 3.1647 0.2946 6.6904 20 6 2.7882 1.3921 7.6878 21 6 1.5014 2.0801 7.2275 22 6 1.7204 2.6994 5.8462 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.5816 1.6876 -2.0284 29 1 2.0953 3.1411 -1.1385 30 1 5.7170 2.5731 -4.0838 31 1 2.6226 0.4189 2.5299 32 1 0.9443 1.0117 2.5302 33 1 1.2925 0.8690 4.7939 34 1 3.6523 0.1328 4.5981 35 1 4.1884 1.6477 5.3634 36 1 4.0815 -0.1951 7.0185 37 1 2.3600 -0.4386 6.6362 38 1 3.5929 2.1254 7.7420 39 1 2.6316 0.9505 8.6719 40 1 1.2330 2.8616 7.9382 41 1 0.6968 1.3468 7.1732 42 1 2.5249 3.4327 5.9009 43 1 0.8036 3.1895 5.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:48 Heat of formation + Delta-G solvation = -124.294915 kcal Electronic energy + Delta-G solvation = -21244.001987 eV Core-core repulsion = 18094.596997 eV Total energy + Delta-G solvation = -3149.404990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98543 -39.86984 -37.39082 -36.89587 -34.87813 -32.03818 -31.71624 -31.08605 -29.99974 -28.03950 -24.47441 -24.04159 -23.47542 -23.05888 -20.87467 -19.98283 -19.13098 -18.37264 -17.64726 -17.00745 -16.95046 -16.40555 -15.86667 -15.53083 -15.18967 -14.89134 -14.73967 -14.66941 -14.36295 -13.94306 -13.83299 -13.60028 -13.39119 -13.26876 -13.12433 -12.99949 -12.55614 -12.39602 -12.10939 -12.04404 -11.99316 -11.89487 -11.75646 -11.49054 -11.42493 -11.23705 -10.84761 -10.63838 -10.39728 -9.47064 -8.35625 -6.40945 1.30939 1.36086 1.44027 1.69444 1.94193 2.29822 2.91309 2.99009 3.60160 3.78714 3.83222 3.97865 4.08703 4.16366 4.21464 4.28191 4.32478 4.36541 4.41064 4.56727 4.59042 4.62108 4.67997 4.77055 4.87337 4.96082 4.98889 5.00679 5.05988 5.12769 5.23876 5.24819 5.31259 5.38687 5.40118 5.45176 5.52180 5.61188 6.16756 6.26006 6.60183 6.65893 7.19250 7.37559 8.81465 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.003983 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.096675 B = 7028.542928 C = 7295.790512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.597 5.597 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.236 1.236 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.060 3.940 16 O -0.394 6.394 17 C 0.083 3.917 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.118 4.118 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.269 0.731 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -8.383 19.555 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.330 5.330 4 C 0.104 3.896 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.159 1.159 13 C 0.283 3.717 14 O -0.466 6.466 15 C -0.020 4.020 16 O -0.314 6.314 17 C 0.026 3.974 18 C -0.183 4.183 19 C -0.148 4.148 20 C -0.161 4.161 21 C -0.146 4.146 22 C -0.156 4.156 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.195 -7.592 19.390 24.651 hybrid contribution 0.547 0.562 -0.997 1.269 sum -12.648 -7.030 18.392 23.402 Atomic orbital electron populations 1.22177 0.93669 1.03890 1.02200 1.21861 0.95873 0.80742 1.04256 1.48021 1.64224 1.15376 1.05362 1.19309 0.94929 0.92951 0.82400 1.21574 0.97126 1.32271 1.06749 0.95382 1.25871 0.96787 0.97137 0.98962 1.70052 1.17426 1.46518 1.24507 0.85709 0.80523 0.78881 0.77797 1.20398 1.19730 1.15918 1.21085 0.77479 0.86680 0.86496 1.90648 1.47100 1.20901 1.87969 1.22321 1.02979 0.92611 0.84049 1.88044 1.88735 1.40258 1.14323 1.22431 0.97447 0.95982 0.81562 1.22074 0.97774 0.99891 0.98541 1.21485 1.02472 0.98054 0.92819 1.21606 0.97442 0.97842 0.99193 1.21479 0.98363 1.00499 0.94272 1.21612 1.01550 0.97412 0.95001 0.91995 0.93384 0.88359 0.90542 0.88523 0.92847 0.96692 0.92217 0.88770 0.87019 0.89725 0.91955 0.93231 0.91106 0.90343 0.92815 0.90012 0.90494 0.90361 0.92995 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.64 16 2 C 0.09 2.70 5.93 86.38 0.51 3.21 16 3 N -0.60 -24.81 2.46 -826.17 -2.03 -26.84 16 4 C 0.23 11.34 4.23 85.63 0.36 11.70 16 5 C -0.54 -32.57 9.94 25.60 0.25 -32.31 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.63 5.47 84.66 0.46 1.09 16 8 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 9 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 13 C 0.49 21.48 7.75 87.66 0.68 22.16 16 14 O -0.59 -32.58 16.08 16.00 0.26 -32.32 16 15 C 0.06 1.79 4.78 71.24 0.34 2.13 16 16 O -0.39 -13.24 9.52 -129.94 -1.24 -14.47 16 17 C 0.08 1.88 2.61 30.59 0.08 1.96 16 18 C -0.14 -3.08 5.54 30.59 0.17 -2.91 16 19 C -0.11 -1.61 5.92 30.60 0.18 -1.43 16 20 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 21 C -0.11 -1.50 5.92 30.58 0.18 -1.32 16 22 C -0.12 -2.45 5.57 30.58 0.17 -2.28 16 23 H 0.06 1.18 7.22 -2.39 -0.02 1.17 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 27 H 0.10 2.16 6.44 -2.39 -0.02 2.14 16 28 H 0.05 2.43 7.13 -2.39 -0.02 2.41 16 29 H 0.01 0.82 6.85 -2.39 -0.02 0.80 16 30 H 0.27 16.05 8.31 -92.70 -0.77 15.27 16 31 H 0.09 2.41 7.13 -2.39 -0.02 2.39 16 32 H 0.11 2.43 7.13 -2.39 -0.02 2.41 16 33 H 0.08 1.47 7.79 -2.39 -0.02 1.45 16 34 H 0.06 1.32 7.87 -2.39 -0.02 1.30 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -82.26 341.61 4.39 -77.87 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.90 Total: 11.22 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 4.31 Total: -2.12 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -1.73 Total: -87.41 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.98 Total: -46.80 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -82.26 4.39 -77.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.426 kcal (2) G-P(sol) polarization free energy of solvation -82.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds