Wall clock time and date at job start Mon Mar 30 2020 00:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21281 * 120.00208 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00070 * 180.02562 * 14 12 2 17 17 O 1.42905 * 109.47059 * 179.97438 * 16 14 12 18 18 C 1.42905 * 113.99723 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47221 * 269.99985 * 18 17 16 20 20 C 1.53003 * 109.47263 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47193 * 60.00077 * 20 19 18 22 22 C 1.53006 * 109.47118 * 300.00153 * 21 20 19 23 23 C 1.52999 * 109.46908 * 60.00032 * 22 21 20 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 29 29 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 30 30 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 31 31 H 1.08999 * 109.47401 * 300.00043 * 16 14 12 32 32 H 1.09002 * 109.47014 * 60.00321 * 16 14 12 33 33 H 1.08998 * 109.47113 * 30.00340 * 18 17 16 34 34 H 1.08998 * 109.47367 * 300.00200 * 19 18 17 35 35 H 1.09002 * 109.47390 * 60.00408 * 19 18 17 36 36 H 1.08998 * 109.46766 * 300.00169 * 20 19 18 37 37 H 1.09000 * 109.47438 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47319 * 180.02562 * 21 20 19 39 39 H 1.08992 * 109.47248 * 59.99915 * 21 20 19 40 40 H 1.08998 * 109.47252 * 300.00160 * 22 21 20 41 41 H 1.09003 * 109.47038 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47132 * 179.97438 * 23 22 21 43 43 H 1.09004 * 109.47454 * 59.99929 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2950 -0.7459 -3.3141 17 8 4.0885 0.1525 -4.0923 18 6 4.6165 -0.4251 -5.2880 19 6 5.9829 -1.0472 -4.9937 20 6 6.5485 -1.6650 -6.2740 21 6 6.7018 -0.5784 -7.3401 22 6 5.3353 0.0438 -7.6345 23 6 4.7698 0.6616 -6.3541 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7091 1.1614 3.4844 28 1 0.7375 -2.1444 -1.9994 29 1 2.4628 -2.5819 -1.9865 30 1 1.5295 -2.5969 -0.4708 31 1 3.9003 -1.6025 -3.0179 32 1 2.4469 -1.0880 -3.9073 33 1 3.9365 -1.1963 -5.6499 34 1 6.6628 -0.2760 -4.6317 35 1 5.8738 -1.8211 -4.2339 36 1 5.8687 -2.4361 -6.6364 37 1 7.5218 -2.1086 -6.0643 38 1 7.1043 -1.0186 -8.2524 39 1 7.3815 0.1927 -6.9778 40 1 4.6554 -0.7273 -7.9968 41 1 5.4446 0.8182 -8.3937 42 1 3.7965 1.1052 -6.5639 43 1 5.4496 1.4328 -5.9917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:37 Heat of formation + Delta-G solvation = -121.166167 kcal Electronic energy + Delta-G solvation = -21213.590965 eV Core-core repulsion = 18064.321648 eV Total energy + Delta-G solvation = -3149.269317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92699 -39.86015 -37.47405 -36.88491 -34.83313 -31.91932 -31.67586 -30.71528 -28.29997 -27.50430 -27.28863 -23.56206 -23.23852 -22.83809 -20.85004 -20.01354 -18.56220 -18.30578 -17.32395 -17.09441 -16.98291 -16.47764 -15.84380 -15.50984 -15.18990 -14.81393 -14.70186 -14.30040 -14.03481 -13.79107 -13.56347 -13.52046 -13.15266 -13.07579 -13.00727 -12.86485 -12.74577 -12.65908 -12.20107 -12.09552 -12.04913 -11.95345 -11.48510 -11.43775 -11.23398 -11.20164 -10.65184 -10.47157 -10.38183 -9.36056 -8.15315 -6.32336 1.41288 1.43137 1.52898 1.73445 1.99304 2.41856 2.99513 3.12813 3.66598 3.79967 3.85289 4.06016 4.11575 4.22389 4.29093 4.33905 4.37051 4.48641 4.57483 4.59956 4.69255 4.74316 4.76177 4.89052 4.96338 5.03377 5.04549 5.07646 5.13655 5.24412 5.25503 5.31918 5.40728 5.46440 5.52507 5.57433 5.65693 6.01417 6.15125 6.25316 6.75765 6.79959 7.30506 7.46238 8.89479 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.003679 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.919656 B = 7608.777151 C = 7880.103930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.539 4.539 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.258 1.258 12 N -0.599 5.599 13 C 0.076 3.924 14 C 0.489 3.511 15 O -0.597 6.597 16 C 0.061 3.939 17 O -0.394 6.394 18 C 0.082 3.918 19 C -0.143 4.143 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.119 4.119 24 H 0.067 0.933 25 H 0.019 0.981 26 H 0.050 0.950 27 H 0.265 0.735 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -10.494 -19.676 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.182 1.182 12 N -0.331 5.331 13 C -0.066 4.066 14 C 0.278 3.722 15 O -0.479 6.479 16 C -0.019 4.019 17 O -0.314 6.314 18 C 0.025 3.975 19 C -0.181 4.181 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.156 4.156 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.795 -9.613 -19.387 22.682 hybrid contribution 0.105 0.089 1.323 1.330 sum 6.899 -9.525 -18.065 21.556 Atomic orbital electron populations 1.21861 0.96894 1.00303 0.99893 1.18548 0.91782 0.92117 0.81680 0.97827 1.21593 1.31968 1.13193 0.91041 0.91772 1.25788 0.95039 0.95668 1.02178 1.70031 1.37321 1.23960 1.24478 0.85415 0.77688 0.79305 0.78363 1.20970 1.20533 1.18215 1.48213 1.48966 1.13653 1.22227 1.21942 1.01542 0.80097 1.03046 1.21160 0.78769 0.86915 0.85388 1.90635 1.59513 1.19871 1.77859 1.22295 0.96772 0.92289 0.90501 1.88048 1.68351 1.38558 1.36414 1.22430 0.94797 0.96168 0.84104 1.22060 0.96622 1.00190 0.99223 1.21485 1.01572 0.98105 0.93706 1.21600 0.97010 0.98153 0.99285 1.21491 0.97010 1.00701 0.95456 1.21625 1.01577 0.97575 0.94860 0.91421 0.96236 0.93074 0.92617 0.91138 0.88966 0.90951 0.88168 0.87481 0.89955 0.93023 0.91696 0.90504 0.90951 0.90078 0.92691 0.90509 0.90570 0.91856 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.80 16 2 C 0.26 13.99 2.64 44.25 0.12 14.11 16 3 H 0.00 0.24 6.90 -2.39 -0.02 0.23 16 4 C -0.54 -29.76 7.99 25.60 0.20 -29.56 16 5 H 0.06 3.39 7.33 -2.91 -0.02 3.37 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 N -0.60 -25.90 2.75 -826.78 -2.28 -28.18 16 13 C 0.08 2.28 9.24 127.77 1.18 3.46 16 14 C 0.49 21.59 7.75 87.66 0.68 22.27 16 15 O -0.60 -33.62 15.83 16.00 0.25 -33.37 16 16 C 0.06 1.82 4.78 71.24 0.34 2.16 16 17 O -0.39 -13.18 9.52 -129.94 -1.24 -14.42 16 18 C 0.08 1.86 2.61 30.59 0.08 1.94 16 19 C -0.14 -2.89 5.54 30.59 0.17 -2.72 16 20 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 21 C -0.12 -1.62 5.92 30.59 0.18 -1.43 16 22 C -0.11 -1.53 5.92 30.60 0.18 -1.34 16 23 C -0.12 -2.49 5.57 30.60 0.17 -2.32 16 24 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 2.24 7.67 -2.39 -0.02 2.22 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 2.03 6.44 -2.39 -0.02 2.01 16 30 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 31 H 0.10 2.43 7.13 -2.39 -0.02 2.41 16 32 H 0.11 2.44 8.05 -2.39 -0.02 2.42 16 33 H 0.08 1.46 7.79 -2.39 -0.02 1.44 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.28 7.87 -2.39 -0.02 1.26 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -75.17 338.57 4.55 -70.62 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.96 Total: 13.16 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.58 Total: 0.56 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.03 Total: -81.95 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.98 Total: -47.79 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.17 4.55 -70.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.544 kcal (2) G-P(sol) polarization free energy of solvation -75.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds