Wall clock time and date at job start Mon Mar 30 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 O 1.42905 * 109.47044 * 179.97438 * 16 14 12 18 18 C 1.42897 * 114.00113 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47375 * 270.00256 * 18 17 16 20 20 C 1.53007 * 109.47228 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46789 * 60.00027 * 20 19 18 22 22 C 1.52994 * 109.47213 * 299.99982 * 21 20 19 23 23 C 1.53002 * 109.46888 * 150.00132 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 29 29 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 30 30 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 31 31 H 1.09000 * 109.47080 * 299.99533 * 16 14 12 32 32 H 1.08993 * 109.47251 * 60.00389 * 16 14 12 33 33 H 1.09002 * 109.46769 * 30.00449 * 18 17 16 34 34 H 1.09002 * 109.47330 * 299.99850 * 19 18 17 35 35 H 1.09002 * 109.47303 * 60.00504 * 19 18 17 36 36 H 1.09002 * 109.47015 * 300.00254 * 20 19 18 37 37 H 1.09002 * 109.47030 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47037 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47157 * 60.00314 * 21 20 19 40 40 H 1.08995 * 109.47693 * 300.00128 * 22 21 20 41 41 H 1.09009 * 109.47285 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47258 * 300.00007 * 23 18 17 43 43 H 1.09002 * 109.47157 * 60.00554 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7460 3.3139 17 8 4.0896 0.1520 4.0915 18 6 4.6168 -0.4253 5.2877 19 6 3.6274 -0.2135 6.4352 20 6 4.1917 -0.8321 7.7159 21 6 5.5239 -0.1636 8.0611 22 6 6.5133 -0.3753 6.9135 23 6 5.9489 0.2438 5.6326 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9845 31 1 2.4471 -1.0881 3.9072 32 1 3.9005 -1.6025 3.0176 33 1 4.7750 -1.4931 5.1366 34 1 3.4693 0.8543 6.5863 35 1 2.6785 -0.6902 6.1895 36 1 4.3496 -1.9000 7.5646 37 1 3.4870 -0.6809 8.5336 38 1 5.9261 -0.6045 8.9731 39 1 5.3661 0.9043 8.2124 40 1 6.6712 -1.4431 6.7622 41 1 7.4623 0.1014 7.1593 42 1 6.6538 0.0929 4.8150 43 1 5.7907 1.3117 5.7837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:39 Heat of formation + Delta-G solvation = -120.434029 kcal Electronic energy + Delta-G solvation = -21205.192974 eV Core-core repulsion = 18055.955405 eV Total energy + Delta-G solvation = -3149.237570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93039 -39.86027 -37.47685 -36.88844 -34.83679 -31.91937 -31.67223 -30.71348 -28.29105 -27.57364 -27.25395 -23.55836 -23.23420 -22.83435 -20.84387 -20.01043 -18.56732 -18.28772 -17.35783 -17.13539 -16.92952 -16.46357 -15.86454 -15.53234 -15.18377 -14.85826 -14.59880 -14.43528 -14.02510 -13.85290 -13.56545 -13.45398 -13.14779 -13.04255 -13.03327 -12.90559 -12.70760 -12.62600 -12.18245 -12.13186 -12.04762 -11.94917 -11.48156 -11.44266 -11.23016 -11.19849 -10.64597 -10.47413 -10.37850 -9.36461 -8.15018 -6.32366 1.41161 1.44307 1.51520 1.73181 1.99273 2.41967 2.99112 3.12728 3.66360 3.80176 3.85256 4.05565 4.10958 4.23301 4.29205 4.34135 4.37068 4.46612 4.57476 4.59978 4.68324 4.70173 4.78616 4.87685 4.96370 5.02380 5.04960 5.07537 5.13758 5.24441 5.25609 5.32028 5.40793 5.44631 5.52809 5.59851 5.65560 6.01054 6.14767 6.25329 6.75399 6.79979 7.30503 7.46178 8.89424 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.003604 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.190792 B = 7766.522429 C = 7965.006401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.599 5.599 13 C 0.079 3.921 14 C 0.489 3.511 15 O -0.597 6.597 16 C 0.061 3.939 17 O -0.394 6.394 18 C 0.081 3.919 19 C -0.142 4.142 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.119 4.119 24 H 0.019 0.981 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.265 0.735 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -10.192 20.142 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.331 5.331 13 C -0.063 4.063 14 C 0.278 3.722 15 O -0.479 6.479 16 C -0.019 4.019 17 O -0.314 6.314 18 C 0.024 3.976 19 C -0.179 4.179 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.157 4.157 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.976 -9.305 19.851 22.724 hybrid contribution 0.030 0.096 -1.267 1.271 sum 6.006 -9.210 18.584 21.593 Atomic orbital electron populations 1.21880 0.96888 1.00356 0.99972 1.18546 0.91796 0.92099 0.81673 0.97801 1.21563 1.32068 1.13177 0.91101 0.91923 1.25781 0.95040 0.95649 1.02161 1.70022 1.37315 1.23911 1.24549 0.85473 0.78353 0.79056 0.77909 1.18391 1.20937 1.20329 1.48211 1.48931 1.13677 1.22269 1.21905 1.01975 0.79977 1.02459 1.21159 0.78753 0.86890 0.85422 1.90634 1.59472 1.19847 1.77904 1.22295 0.97080 0.92220 0.90261 1.88045 1.68375 1.38884 1.36068 1.22432 0.93824 0.97903 0.83395 1.22052 0.98804 1.01472 0.95616 1.21491 0.97064 1.00357 0.95973 1.21600 0.95172 1.00853 0.98403 1.21501 0.98752 1.01518 0.92925 1.21639 0.94975 1.00269 0.98829 0.96153 0.92913 0.91373 0.92602 0.92181 0.88459 0.90748 0.87610 0.88023 0.90142 0.92864 0.91450 0.90587 0.90789 0.90107 0.92599 0.90620 0.90647 0.92131 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.95 71.98 0.64 -5.86 16 2 C 0.26 14.01 2.64 44.25 0.12 14.13 16 3 H 0.00 0.26 6.90 -2.39 -0.02 0.24 16 4 C -0.54 -29.95 8.37 25.60 0.21 -29.74 16 5 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.82 16 8 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.60 -25.94 2.75 -826.80 -2.28 -28.22 16 13 C 0.08 2.38 9.48 127.77 1.21 3.59 16 14 C 0.49 21.61 7.75 87.66 0.68 22.29 16 15 O -0.60 -33.62 15.83 16.01 0.25 -33.37 16 16 C 0.06 1.82 4.78 71.24 0.34 2.16 16 17 O -0.39 -13.19 9.52 -129.94 -1.24 -14.42 16 18 C 0.08 1.85 2.61 30.59 0.08 1.93 16 19 C -0.14 -2.75 5.54 30.59 0.17 -2.58 16 20 C -0.11 -1.49 5.92 30.60 0.18 -1.31 16 21 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 22 C -0.11 -1.56 5.92 30.61 0.18 -1.38 16 23 C -0.12 -2.55 5.58 30.61 0.17 -2.38 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 2.30 6.66 -2.39 -0.02 2.28 16 26 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 27 H 0.26 14.76 8.31 -92.71 -0.77 13.98 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 2.01 6.44 -2.38 -0.02 2.00 16 30 H 0.07 2.27 6.43 -2.39 -0.02 2.26 16 31 H 0.11 2.41 7.13 -2.39 -0.02 2.40 16 32 H 0.10 2.45 8.05 -2.39 -0.02 2.44 16 33 H 0.08 1.46 7.79 -2.39 -0.02 1.44 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.23 7.87 -2.39 -0.02 1.22 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.30 337.90 4.59 -70.71 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.96 Total: 13.01 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 4.62 Total: 0.62 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.03 Total: -82.04 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.98 Total: -47.79 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.30 4.59 -70.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.726 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds