Wall clock time and date at job start Mon Mar 30 2020 01:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47195 * 2 1 4 4 C 1.37102 * 119.99867 * 262.98005 * 3 2 1 5 5 H 1.07992 * 119.99657 * 142.21349 * 4 3 2 6 6 C 1.38952 * 120.00075 * 322.21692 * 4 3 2 7 7 N 1.31412 * 119.99982 * 157.12908 * 6 4 3 8 8 Si 1.86800 * 120.00156 * 337.12931 * 6 4 3 9 9 H 1.48505 * 109.47054 * 95.20395 * 8 6 4 10 10 H 1.48493 * 109.47132 * 215.20400 * 8 6 4 11 11 H 1.48500 * 109.47072 * 335.20744 * 8 6 4 12 12 C 1.34773 * 120.00015 * 82.98372 * 3 2 1 13 13 O 1.21290 * 119.99615 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00162 * 0.02562 * 12 3 2 15 15 O 1.42900 * 109.47155 * 179.97438 * 14 12 3 16 16 C 1.42897 * 113.99691 * 179.97438 * 15 14 12 17 17 H 1.08997 * 109.47414 * 30.00378 * 16 15 14 18 18 C 1.53003 * 109.47633 * 270.00165 * 16 15 14 19 19 C 1.53004 * 109.46871 * 300.00214 * 18 16 15 20 20 C 1.52995 * 109.47467 * 299.99725 * 19 18 16 21 21 C 1.53009 * 109.46973 * 59.99977 * 20 19 18 22 22 C 1.53000 * 109.46888 * 150.00112 * 16 15 14 23 23 H 1.09004 * 109.47306 * 179.97438 * 22 16 15 24 24 C 1.52998 * 109.47356 * 300.00423 * 22 16 15 25 25 H 1.09004 * 109.47240 * 300.00501 * 1 2 3 26 26 H 1.09000 * 109.47159 * 60.00129 * 1 2 3 27 27 H 1.08999 * 109.47644 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46890 * 239.99914 * 2 1 3 29 29 H 1.09002 * 109.46704 * 120.00117 * 2 1 3 30 30 H 0.96996 * 119.99865 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46636 * 300.00146 * 14 12 3 32 32 H 1.09001 * 109.46991 * 59.99824 * 14 12 3 33 33 H 1.09000 * 109.46505 * 60.00046 * 18 16 15 34 34 H 1.08992 * 109.47191 * 180.02562 * 18 16 15 35 35 H 1.09000 * 109.46633 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.46797 * 59.99785 * 19 18 16 37 37 H 1.09004 * 109.47080 * 300.00621 * 20 19 18 38 38 H 1.08997 * 109.47196 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46628 * 180.02562 * 21 20 19 40 40 H 1.08992 * 109.46896 * 60.00004 * 21 20 19 41 41 H 1.08998 * 109.47262 * 59.99873 * 24 22 16 42 42 H 1.08993 * 109.47224 * 179.97438 * 24 22 16 43 43 H 1.09003 * 109.46890 * 300.00028 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9791 -1.1785 5 1 2.1621 3.0227 -1.3458 6 6 3.0389 1.2423 -2.1575 7 7 2.9961 1.6318 -3.4118 8 14 3.9806 -0.3020 -1.6907 9 1 3.1111 -1.4900 -1.8859 10 1 5.1864 -0.4248 -2.5486 11 1 4.3926 -0.2190 -0.2664 12 6 2.1086 2.0640 1.1584 13 8 2.5133 3.2074 1.1584 14 6 1.7076 1.4066 2.4538 15 8 1.8926 2.3262 3.5319 16 6 1.5391 1.7993 4.8123 17 1 1.7060 0.7222 4.8207 18 6 0.0633 2.0889 5.0934 19 6 -0.1710 3.6009 5.0817 20 6 0.6922 4.2591 6.1599 21 6 2.1681 3.9694 5.8788 22 6 2.4023 2.4575 5.8905 23 1 2.1325 2.0559 6.8673 24 6 3.8782 2.1680 5.6095 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.4538 1.1176 -4.0952 31 1 0.6594 1.1122 2.4026 32 1 2.3253 0.5239 2.6197 33 1 -0.5516 1.6200 4.3252 34 1 -0.2061 1.6874 6.0702 35 1 -1.2225 3.8071 5.2815 36 1 0.0986 4.0027 4.1050 37 1 0.4227 3.8571 7.1366 38 1 0.5256 5.3362 6.1512 39 1 2.7830 4.4380 6.6473 40 1 2.4376 4.3713 4.9022 41 1 4.1477 2.5699 4.6328 42 1 4.4931 2.6372 6.3774 43 1 4.0451 1.0908 5.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112802293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:07 Heat of formation + Delta-G solvation = -92.089930 kcal Electronic energy + Delta-G solvation = -22094.713380 eV Core-core repulsion = 18946.704902 eV Total energy + Delta-G solvation = -3148.008477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60602 -38.56145 -35.82706 -34.96699 -32.53906 -32.29018 -30.12097 -29.73988 -27.84366 -26.03914 -24.22411 -22.91372 -22.42770 -21.29861 -19.51037 -19.02964 -16.92277 -16.31518 -16.16616 -15.63393 -15.46651 -14.97437 -14.34049 -14.26646 -13.77401 -13.58631 -13.29290 -13.11676 -12.89594 -12.55901 -12.37666 -12.29808 -12.13735 -11.84019 -11.59403 -11.44187 -11.38513 -11.26399 -11.00528 -10.78171 -10.71690 -10.39890 -10.32865 -10.12449 -9.89080 -9.86964 -9.15434 -9.05546 -8.41502 -7.74069 -6.38827 -3.94769 3.02472 3.21858 3.26955 3.68338 3.74117 4.16311 4.57931 4.73554 4.76987 4.87236 5.04006 5.18495 5.21424 5.31241 5.39497 5.46094 5.49383 5.52844 5.59618 5.61151 5.68690 5.71795 5.85911 5.87769 5.89424 5.96429 5.99280 6.01646 6.19117 6.21353 6.25888 6.35830 6.37282 6.38842 6.47464 6.64708 6.71165 7.41124 7.62067 8.30225 8.54910 8.99467 9.32909 9.80066 10.73391 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.005142 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.044167 B = 5443.899690 C = 5615.134905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.467 5.467 4 C -0.312 4.312 5 H 0.105 0.895 6 C 0.061 3.939 7 N -0.863 5.863 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.468 3.532 13 O -0.543 6.543 14 C 0.046 3.954 15 O -0.344 6.344 16 C 0.089 3.911 17 H 0.056 0.944 18 C -0.140 4.140 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.082 4.082 23 H 0.074 0.926 24 C -0.148 4.148 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.273 0.727 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -4.506 17.517 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.039 4.039 3 N -0.191 5.191 4 C -0.439 4.439 5 H 0.122 0.878 6 C -0.144 4.144 7 N -0.499 5.499 8 Si 0.699 3.301 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.256 3.744 13 O -0.423 6.423 14 C -0.035 4.035 15 O -0.262 6.262 16 C 0.030 3.970 17 H 0.074 0.926 18 C -0.177 4.177 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.101 4.101 23 H 0.092 0.908 24 C -0.205 4.205 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.591 -3.735 17.278 18.263 hybrid contribution 0.358 -1.380 0.067 1.427 sum -4.232 -5.114 17.345 18.572 Atomic orbital electron populations 1.22159 0.96301 1.01025 1.02704 1.21815 0.94678 0.85835 1.01546 1.43707 1.57923 1.11485 1.06017 1.19005 1.36992 0.98603 0.89303 0.87766 1.25344 0.96246 0.98114 0.94732 1.69765 1.40205 1.40253 0.99709 0.87032 0.80440 0.82886 0.79734 1.20213 1.21264 1.18859 1.19929 0.82601 0.88118 0.83783 1.90578 1.47820 1.17901 1.85982 1.22451 1.00226 0.92574 0.88205 1.88070 1.86687 1.38177 1.13243 1.22128 0.93512 0.96651 0.84682 0.92642 1.22014 0.96768 0.97551 1.01403 1.21429 0.98641 0.94853 1.00462 1.21497 0.95496 1.00079 0.98216 1.21538 0.95786 0.95020 1.02736 1.21178 0.95403 0.96630 0.96873 0.90793 1.21796 0.95070 1.00903 1.02770 0.93091 0.91298 0.92609 0.90475 0.92504 0.91620 0.91757 0.91980 0.91948 0.91588 0.92674 0.90609 0.92744 0.92246 0.92568 0.90335 0.91177 0.92998 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.11 37.16 0.38 -2.32 16 2 C 0.09 1.68 4.46 -4.04 -0.02 1.66 16 3 N -0.47 -11.40 2.18 -114.81 -0.25 -11.65 16 4 C -0.31 -8.92 9.35 -14.93 -0.14 -9.06 16 5 H 0.10 3.36 7.92 -52.49 -0.42 2.94 16 6 C 0.06 1.70 5.24 -17.47 -0.09 1.61 16 7 N -0.86 -25.01 13.96 55.50 0.77 -24.23 16 8 Si 0.87 20.52 25.12 -169.99 -4.27 16.25 16 9 H -0.28 -5.97 6.67 56.52 0.38 -5.59 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.47 11.27 7.65 -10.99 -0.08 11.18 16 13 O -0.54 -15.46 16.37 -14.36 -0.24 -15.70 16 14 C 0.05 0.82 4.84 36.01 0.17 1.00 16 15 O -0.34 -6.10 7.50 -55.14 -0.41 -6.52 16 16 C 0.09 1.17 2.35 -26.73 -0.06 1.11 16 17 H 0.06 0.66 7.79 -51.93 -0.40 0.26 16 18 C -0.14 -1.63 5.63 -26.73 -0.15 -1.78 16 19 C -0.12 -1.44 5.78 -26.73 -0.15 -1.59 16 20 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 21 C -0.11 -1.40 5.06 -26.72 -0.14 -1.54 16 22 C -0.08 -0.98 2.55 -90.62 -0.23 -1.21 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -1.83 9.05 37.16 0.34 -1.49 16 25 H 0.05 0.77 6.39 -51.93 -0.33 0.44 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.62 3.72 -51.93 -0.19 1.43 16 29 H 0.06 0.95 6.74 -51.93 -0.35 0.60 16 30 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.06 1.01 6.08 -51.93 -0.32 0.70 16 32 H 0.06 1.00 7.37 -51.93 -0.38 0.62 16 33 H 0.06 0.73 7.87 -51.93 -0.41 0.32 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.21 7.68 -51.93 -0.40 0.81 16 41 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -32.18 330.62 -7.14 -39.31 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.39 Total: 1.43 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.34 Total: -3.88 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.52 Total: -35.89 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.65 Total: -22.21 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.27 Total: 16.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.18 -7.14 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.776 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds