Wall clock time and date at job start Mon Mar 30 2020 01:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47195 * 2 1 4 4 C 1.37102 * 119.99867 * 262.98005 * 3 2 1 5 5 H 1.07992 * 119.99657 * 142.21349 * 4 3 2 6 6 C 1.38952 * 120.00075 * 322.21692 * 4 3 2 7 7 N 1.31412 * 119.99982 * 157.12908 * 6 4 3 8 8 Si 1.86800 * 120.00156 * 337.12931 * 6 4 3 9 9 H 1.48505 * 109.47054 * 95.20395 * 8 6 4 10 10 H 1.48493 * 109.47132 * 215.20400 * 8 6 4 11 11 H 1.48500 * 109.47072 * 335.20744 * 8 6 4 12 12 C 1.34773 * 120.00015 * 82.98372 * 3 2 1 13 13 O 1.21290 * 119.99615 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00162 * 0.02562 * 12 3 2 15 15 O 1.42900 * 109.47155 * 179.97438 * 14 12 3 16 16 C 1.42897 * 113.99691 * 179.97438 * 15 14 12 17 17 H 1.08997 * 109.47414 * 30.00378 * 16 15 14 18 18 C 1.53003 * 109.47633 * 270.00165 * 16 15 14 19 19 C 1.53004 * 109.46871 * 300.00214 * 18 16 15 20 20 C 1.52995 * 109.47467 * 299.99725 * 19 18 16 21 21 C 1.53009 * 109.46973 * 59.99977 * 20 19 18 22 22 C 1.53000 * 109.46888 * 150.00112 * 16 15 14 23 23 H 1.09004 * 109.47306 * 179.97438 * 22 16 15 24 24 C 1.52998 * 109.47356 * 300.00423 * 22 16 15 25 25 H 1.09004 * 109.47240 * 300.00501 * 1 2 3 26 26 H 1.09000 * 109.47159 * 60.00129 * 1 2 3 27 27 H 1.08999 * 109.47644 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46890 * 239.99914 * 2 1 3 29 29 H 1.09002 * 109.46704 * 120.00117 * 2 1 3 30 30 H 0.96996 * 119.99865 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46636 * 300.00146 * 14 12 3 32 32 H 1.09001 * 109.46991 * 59.99824 * 14 12 3 33 33 H 1.09000 * 109.46505 * 60.00046 * 18 16 15 34 34 H 1.08992 * 109.47191 * 180.02562 * 18 16 15 35 35 H 1.09000 * 109.46633 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.46797 * 59.99785 * 19 18 16 37 37 H 1.09004 * 109.47080 * 300.00621 * 20 19 18 38 38 H 1.08997 * 109.47196 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46628 * 180.02562 * 21 20 19 40 40 H 1.08992 * 109.46896 * 60.00004 * 21 20 19 41 41 H 1.08998 * 109.47262 * 59.99873 * 24 22 16 42 42 H 1.08993 * 109.47224 * 179.97438 * 24 22 16 43 43 H 1.09003 * 109.46890 * 300.00028 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3837 1.9791 -1.1785 5 1 2.1621 3.0227 -1.3458 6 6 3.0389 1.2423 -2.1575 7 7 2.9961 1.6318 -3.4118 8 14 3.9806 -0.3020 -1.6907 9 1 3.1111 -1.4900 -1.8859 10 1 5.1864 -0.4248 -2.5486 11 1 4.3926 -0.2190 -0.2664 12 6 2.1086 2.0640 1.1584 13 8 2.5133 3.2074 1.1584 14 6 1.7076 1.4066 2.4538 15 8 1.8926 2.3262 3.5319 16 6 1.5391 1.7993 4.8123 17 1 1.7060 0.7222 4.8207 18 6 0.0633 2.0889 5.0934 19 6 -0.1710 3.6009 5.0817 20 6 0.6922 4.2591 6.1599 21 6 2.1681 3.9694 5.8788 22 6 2.4023 2.4575 5.8905 23 1 2.1325 2.0559 6.8673 24 6 3.8782 2.1680 5.6095 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.4538 1.1176 -4.0952 31 1 0.6594 1.1122 2.4026 32 1 2.3253 0.5239 2.6197 33 1 -0.5516 1.6200 4.3252 34 1 -0.2061 1.6874 6.0702 35 1 -1.2225 3.8071 5.2815 36 1 0.0986 4.0027 4.1050 37 1 0.4227 3.8571 7.1366 38 1 0.5256 5.3362 6.1512 39 1 2.7830 4.4380 6.6473 40 1 2.4376 4.3713 4.9022 41 1 4.1477 2.5699 4.6328 42 1 4.4931 2.6372 6.3774 43 1 4.0451 1.0908 5.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112802293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:06 Heat of formation + Delta-G solvation = -112.379453 kcal Electronic energy + Delta-G solvation = -22095.593199 eV Core-core repulsion = 18946.704902 eV Total energy + Delta-G solvation = -3148.888297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95376 -40.08436 -37.25833 -36.66581 -34.37244 -33.46023 -31.40718 -31.10574 -29.41005 -27.08735 -26.10971 -24.45003 -23.38589 -22.24839 -20.92002 -20.47083 -18.88235 -17.94883 -17.66141 -17.03469 -16.94575 -16.15877 -15.74368 -15.65699 -15.09900 -14.97565 -14.65551 -14.53033 -14.22122 -14.10235 -13.90563 -13.64045 -13.43447 -13.05393 -12.95811 -12.71148 -12.61110 -12.43886 -12.39147 -12.34562 -11.96746 -11.73631 -11.68072 -11.37779 -11.29353 -11.06065 -10.80920 -10.33608 -10.28335 -9.74769 -8.53426 -6.15405 1.17332 1.30811 1.43546 1.90006 2.15908 2.28058 2.87119 3.22928 3.73968 3.84380 3.90068 3.96809 3.97505 4.20556 4.25711 4.27151 4.29606 4.43194 4.45871 4.52634 4.59931 4.63955 4.67022 4.79891 4.92415 4.93592 4.97878 4.98745 5.07497 5.10806 5.25268 5.32449 5.36554 5.38301 5.44598 5.49567 5.52661 5.66058 6.01379 6.30217 6.61000 6.93747 7.26895 7.85928 8.64213 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.005142 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.044167 B = 5443.899690 C = 5615.134905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 N -0.475 5.475 4 C -0.334 4.334 5 H 0.038 0.962 6 C 0.014 3.986 7 N -0.909 5.909 8 Si 0.947 3.053 9 H -0.233 1.233 10 H -0.288 1.288 11 H -0.260 1.260 12 C 0.455 3.545 13 O -0.607 6.607 14 C 0.061 3.939 15 O -0.376 6.376 16 C 0.078 3.922 17 H 0.079 0.921 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.081 4.081 23 H 0.109 0.891 24 C -0.146 4.146 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.281 0.719 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 -8.550 20.897 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.048 4.048 3 N -0.199 5.199 4 C -0.462 4.462 5 H 0.056 0.944 6 C -0.188 4.188 7 N -0.546 5.546 8 Si 0.769 3.231 9 H -0.157 1.157 10 H -0.214 1.214 11 H -0.184 1.184 12 C 0.245 3.755 13 O -0.491 6.491 14 C -0.019 4.019 15 O -0.295 6.295 16 C 0.021 3.979 17 H 0.097 0.903 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.099 4.099 23 H 0.127 0.873 24 C -0.203 4.203 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.372 -7.817 20.662 22.735 hybrid contribution 0.559 0.022 -0.991 1.138 sum -4.813 -7.795 19.671 21.699 Atomic orbital electron populations 1.22110 0.93868 1.03604 1.01905 1.22151 0.96832 0.82818 1.02963 1.43861 1.57863 1.13360 1.04770 1.18579 1.39119 0.96600 0.91935 0.94384 1.26157 0.96239 1.02452 0.93972 1.69881 1.41057 1.42654 1.01058 0.85866 0.78764 0.79236 0.79227 1.15712 1.21435 1.18390 1.21107 0.81163 0.87463 0.85794 1.90537 1.50452 1.20884 1.87228 1.22273 1.02184 0.92274 0.85135 1.88080 1.87316 1.39232 1.14882 1.22504 0.94741 0.97987 0.82713 0.90284 1.22030 0.95601 0.96571 1.03174 1.21425 0.99709 0.95918 0.98569 1.21490 0.94219 1.00125 0.99075 1.21514 0.97069 0.95933 1.00623 1.21264 0.94754 0.95853 0.98046 0.87297 1.21770 0.95943 1.01678 1.00940 0.91783 0.94331 0.88190 0.91586 0.88226 0.90963 0.88798 0.88945 0.91939 0.88326 0.91173 0.95003 0.89851 0.92525 0.91169 0.94905 0.95195 0.91614 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.72 10.11 71.98 0.73 -3.99 16 2 C 0.07 2.72 4.46 86.38 0.39 3.11 16 3 N -0.47 -23.52 2.18 -635.54 -1.39 -24.91 16 4 C -0.33 -20.27 9.35 84.04 0.79 -19.48 16 5 H 0.04 2.73 7.92 -2.91 -0.02 2.71 16 6 C 0.01 0.81 5.24 84.93 0.45 1.25 16 7 N -0.91 -54.88 13.96 21.66 0.30 -54.58 16 8 Si 0.95 41.88 25.12 68.60 1.72 43.60 16 9 H -0.23 -8.74 6.67 99.48 0.66 -8.08 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 C 0.45 22.44 7.65 87.66 0.67 23.11 16 13 O -0.61 -37.05 16.37 15.98 0.26 -36.79 16 14 C 0.06 2.09 4.84 71.24 0.34 2.43 16 15 O -0.38 -13.17 7.50 -129.94 -0.97 -14.15 16 16 C 0.08 1.82 2.35 30.60 0.07 1.89 16 17 H 0.08 1.49 7.79 -2.39 -0.02 1.47 16 18 C -0.14 -2.71 5.63 30.60 0.17 -2.54 16 19 C -0.12 -2.77 5.78 30.59 0.18 -2.60 16 20 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 21 C -0.11 -2.73 5.06 30.60 0.15 -2.57 16 22 C -0.08 -1.70 2.55 -10.79 -0.03 -1.73 16 23 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 24 C -0.15 -3.35 9.05 71.98 0.65 -2.70 16 25 H 0.06 1.74 6.39 -2.39 -0.02 1.73 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.56 3.72 -2.39 -0.01 2.56 16 29 H 0.10 2.81 6.74 -2.39 -0.02 2.79 16 30 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.09 2.64 6.08 -2.39 -0.01 2.63 16 32 H 0.09 2.60 7.37 -2.39 -0.02 2.58 16 33 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.03 1.01 7.68 -2.38 -0.02 0.99 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 1.07 7.68 -2.39 -0.02 1.05 16 41 H 0.03 0.91 7.68 -2.39 -0.02 0.89 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -79.57 330.62 5.59 -73.98 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.93 Total: 18.77 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 4.74 Total: -5.93 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.09 Total: -79.48 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.71 Total: -50.94 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.72 Total: 43.60 kcal Total: -79.57 5.59 -73.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.397 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds