Wall clock time and date at job start Mon Mar 30 2020 01:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.37102 * 119.99917 * 95.03877 * 3 2 1 5 5 H 1.07997 * 120.00011 * 214.02746 * 4 3 2 6 6 C 1.38957 * 119.99783 * 33.75445 * 4 3 2 7 7 N 1.31401 * 120.00184 * 22.11896 * 6 4 3 8 8 Si 1.86798 * 119.99708 * 202.12423 * 6 4 3 9 9 H 1.48498 * 109.47240 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47231 * 119.99762 * 8 6 4 11 11 H 1.48498 * 109.47255 * 239.99790 * 8 6 4 12 12 C 1.34771 * 120.00119 * 275.04725 * 3 2 1 13 13 O 1.21293 * 120.00011 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99940 * 359.97438 * 12 3 2 15 15 O 1.42903 * 109.47057 * 180.02562 * 14 12 3 16 16 C 1.42906 * 113.99928 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.46768 * 330.00324 * 16 15 14 18 18 C 1.53000 * 109.46960 * 89.99976 * 16 15 14 19 19 C 1.52999 * 109.47014 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47098 * 300.00624 * 19 18 16 21 21 C 1.52990 * 109.47599 * 59.99840 * 20 19 18 22 22 C 1.52997 * 109.47226 * 210.00269 * 16 15 14 23 23 H 1.08998 * 109.47229 * 300.00488 * 22 16 15 24 24 C 1.53002 * 109.47040 * 59.99863 * 22 16 15 25 25 H 1.09001 * 109.47003 * 299.99775 * 1 2 3 26 26 H 1.08996 * 109.47408 * 60.00030 * 1 2 3 27 27 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47003 * 240.00225 * 2 1 3 29 29 H 1.09005 * 109.47216 * 119.99847 * 2 1 3 30 30 H 0.96995 * 120.00412 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47523 * 300.00577 * 14 12 3 32 32 H 1.08999 * 109.47054 * 60.00656 * 14 12 3 33 33 H 1.09000 * 109.47320 * 300.00224 * 18 16 15 34 34 H 1.08999 * 109.47027 * 60.00021 * 18 16 15 35 35 H 1.08999 * 109.47116 * 60.00186 * 19 18 16 36 36 H 1.09000 * 109.47383 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47207 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46779 * 299.99769 * 20 19 18 39 39 H 1.09002 * 109.47182 * 59.99606 * 21 20 19 40 40 H 1.09005 * 109.47652 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47115 * 60.00333 * 24 22 16 42 42 H 1.09001 * 109.46841 * 180.02562 * 24 22 16 43 43 H 1.09001 * 109.47165 * 299.99679 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3452 1.9928 1.1828 5 1 2.1740 3.0516 1.3085 6 6 2.8913 1.2490 2.2217 7 7 3.4921 0.1082 1.9680 8 14 2.7714 1.8709 3.9790 9 1 2.0528 3.1703 3.9963 10 1 2.0298 0.8836 4.8040 11 1 4.1367 2.0534 4.5338 12 6 2.1462 2.0508 -1.1626 13 8 2.5500 3.1945 -1.1625 14 6 1.7873 1.3785 -2.4627 15 8 2.0072 2.2857 -3.5447 16 6 1.6953 1.7441 -4.8299 17 1 1.8621 0.6670 -4.8204 18 6 0.2294 2.0303 -5.1618 19 6 -0.1043 1.4510 -6.5380 20 6 0.7936 2.0974 -7.5948 21 6 2.2594 1.8112 -7.2629 22 6 2.5931 2.3900 -5.8870 23 1 2.4264 3.4671 -5.8964 24 6 4.0590 2.1038 -5.5550 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8737 -0.4108 2.6932 31 1 2.4097 0.4940 -2.5984 32 1 0.7379 1.0846 -2.4422 33 1 -0.4102 1.5702 -4.4086 34 1 0.0626 3.1074 -5.1712 35 1 0.0626 0.3739 -6.5290 36 1 -1.1485 1.6553 -6.7747 37 1 0.5556 1.6850 -8.5753 38 1 0.6267 3.1745 -7.6038 39 1 2.4263 0.7341 -7.2538 40 1 2.8991 2.2713 -8.0161 41 1 4.2258 1.0267 -5.5456 42 1 4.6987 2.5643 -6.3079 43 1 4.2969 2.5169 -4.5748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112802294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:09 Heat of formation + Delta-G solvation = -101.934409 kcal Electronic energy + Delta-G solvation = -21698.546634 eV Core-core repulsion = 18550.111268 eV Total energy + Delta-G solvation = -3148.435366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.43124 -38.35414 -36.06322 -34.80715 -32.55206 -32.03831 -30.00987 -29.45803 -27.54464 -26.02404 -24.42002 -22.36682 -22.15193 -21.27673 -19.94260 -18.96741 -16.92066 -16.51914 -15.59470 -15.38208 -15.15213 -14.74811 -14.39045 -14.26930 -14.00021 -13.52910 -13.17497 -13.02168 -12.89706 -12.49344 -12.32998 -12.02728 -11.84425 -11.69765 -11.60674 -11.28691 -11.11322 -11.02426 -10.89004 -10.87848 -10.56514 -10.35619 -10.30985 -10.28634 -10.16681 -10.05879 -9.08125 -8.92210 -8.28603 -7.47603 -6.31672 -3.92651 3.16735 3.27578 3.34218 3.76223 3.92963 4.24429 4.64155 4.69281 4.83573 4.99466 5.04844 5.13268 5.24129 5.31868 5.41261 5.45888 5.49424 5.60544 5.68480 5.71800 5.78261 5.85360 5.90768 5.95672 5.98591 6.03742 6.05675 6.12971 6.21827 6.25079 6.29728 6.33650 6.43158 6.49444 6.54980 6.87323 7.26104 7.58401 7.61650 8.27366 8.54992 9.21969 9.42389 10.04041 10.72236 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033724 B = 0.004292 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.062158 B = 6522.281482 C = 6856.509204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.442 5.442 4 C -0.303 4.303 5 H 0.093 0.907 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.918 3.082 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.460 3.540 13 O -0.563 6.563 14 C 0.052 3.948 15 O -0.352 6.352 16 C 0.092 3.908 17 H 0.056 0.944 18 C -0.143 4.143 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.086 4.086 23 H 0.077 0.923 24 C -0.146 4.146 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.116 0.884 30 H 0.267 0.733 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 -3.208 -14.761 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.163 5.163 4 C -0.431 4.431 5 H 0.111 0.889 6 C -0.169 4.169 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.247 3.753 13 O -0.445 6.445 14 C -0.028 4.028 15 O -0.270 6.270 16 C 0.034 3.966 17 H 0.074 0.926 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.105 4.105 23 H 0.095 0.905 24 C -0.204 4.204 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.396 -2.583 -14.616 15.793 hybrid contribution -0.203 -0.320 0.837 0.919 sum -5.599 -2.903 -13.780 15.154 Atomic orbital electron populations 1.22220 0.98225 1.00342 1.01535 1.21633 0.91748 0.85540 1.04208 1.43476 1.56415 1.11906 1.04508 1.19508 1.39696 0.95557 0.88293 0.88931 1.25327 0.94570 0.96521 1.00530 1.69912 1.33114 1.15233 1.32708 0.86003 0.78131 0.79124 0.82292 1.19157 1.20616 1.20777 1.19996 0.82892 0.88212 0.84206 1.90538 1.49026 1.18407 1.86479 1.22394 0.99880 0.92637 0.87929 1.88054 1.87221 1.38853 1.12878 1.22111 0.93367 0.96966 0.84206 0.92613 1.22060 0.96995 1.02237 0.96778 1.21492 0.99256 1.00056 0.94549 1.21569 0.95060 1.01030 0.98240 1.21579 0.96160 1.01001 0.96181 1.21149 0.95256 1.01005 0.93062 0.90460 1.21778 0.94884 1.01179 1.02531 0.92283 0.94062 0.93037 0.93651 0.86606 0.92297 0.91883 0.92163 0.91838 0.91070 0.92059 0.91923 0.92116 0.91852 0.91967 0.91624 0.93191 0.93047 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.15 37.16 0.38 -2.59 16 2 C 0.09 2.02 5.44 -4.04 -0.02 2.00 16 3 N -0.44 -11.43 2.56 -114.81 -0.29 -11.73 16 4 C -0.30 -8.54 8.98 -14.93 -0.13 -8.67 16 5 H 0.09 2.75 7.70 -52.49 -0.40 2.35 16 6 C 0.03 0.90 4.93 -17.47 -0.09 0.82 16 7 N -0.87 -23.47 11.31 55.50 0.63 -22.85 16 8 Si 0.92 20.69 29.61 -169.99 -5.03 15.66 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 C 0.46 11.86 7.67 -10.99 -0.08 11.78 16 13 O -0.56 -16.86 16.32 -14.36 -0.23 -17.09 16 14 C 0.05 1.03 4.83 36.01 0.17 1.21 16 15 O -0.35 -6.93 8.85 -55.14 -0.49 -7.42 16 16 C 0.09 1.34 2.04 -26.73 -0.05 1.28 16 17 H 0.06 0.76 7.79 -51.93 -0.40 0.36 16 18 C -0.14 -1.81 5.54 -26.73 -0.15 -1.96 16 19 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 20 C -0.12 -1.12 5.92 -26.74 -0.16 -1.27 16 21 C -0.11 -1.11 5.20 -26.76 -0.14 -1.25 16 22 C -0.09 -1.11 2.46 -90.65 -0.22 -1.34 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 24 C -0.15 -1.96 9.05 37.16 0.34 -1.62 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.04 0.70 6.62 -51.93 -0.34 0.35 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.89 6.65 -51.93 -0.35 0.55 16 29 H 0.12 2.78 5.32 -51.93 -0.28 2.50 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 32 H 0.06 1.07 6.29 -51.93 -0.33 0.74 16 33 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -31.79 337.39 -8.16 -39.95 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.50 Total: 1.32 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.32 Total: -2.93 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.33 Total: -34.57 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.72 Total: -24.51 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.79 -8.16 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.989 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds