Wall clock time and date at job start Mon Mar 30 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47117 * 2 1 4 4 C 1.37102 * 119.99917 * 95.03877 * 3 2 1 5 5 H 1.07997 * 120.00011 * 214.02746 * 4 3 2 6 6 C 1.38957 * 119.99783 * 33.75445 * 4 3 2 7 7 N 1.31401 * 120.00184 * 22.11896 * 6 4 3 8 8 Si 1.86798 * 119.99708 * 202.12423 * 6 4 3 9 9 H 1.48498 * 109.47240 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47231 * 119.99762 * 8 6 4 11 11 H 1.48498 * 109.47255 * 239.99790 * 8 6 4 12 12 C 1.34771 * 120.00119 * 275.04725 * 3 2 1 13 13 O 1.21293 * 120.00011 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99940 * 359.97438 * 12 3 2 15 15 O 1.42903 * 109.47057 * 180.02562 * 14 12 3 16 16 C 1.42906 * 113.99928 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.46768 * 330.00324 * 16 15 14 18 18 C 1.53000 * 109.46960 * 89.99976 * 16 15 14 19 19 C 1.52999 * 109.47014 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47098 * 300.00624 * 19 18 16 21 21 C 1.52990 * 109.47599 * 59.99840 * 20 19 18 22 22 C 1.52997 * 109.47226 * 210.00269 * 16 15 14 23 23 H 1.08998 * 109.47229 * 300.00488 * 22 16 15 24 24 C 1.53002 * 109.47040 * 59.99863 * 22 16 15 25 25 H 1.09001 * 109.47003 * 299.99775 * 1 2 3 26 26 H 1.08996 * 109.47408 * 60.00030 * 1 2 3 27 27 H 1.08999 * 109.46758 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47003 * 240.00225 * 2 1 3 29 29 H 1.09005 * 109.47216 * 119.99847 * 2 1 3 30 30 H 0.96995 * 120.00412 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47523 * 300.00577 * 14 12 3 32 32 H 1.08999 * 109.47054 * 60.00656 * 14 12 3 33 33 H 1.09000 * 109.47320 * 300.00224 * 18 16 15 34 34 H 1.08999 * 109.47027 * 60.00021 * 18 16 15 35 35 H 1.08999 * 109.47116 * 60.00186 * 19 18 16 36 36 H 1.09000 * 109.47383 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47207 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46779 * 299.99769 * 20 19 18 39 39 H 1.09002 * 109.47182 * 59.99606 * 21 20 19 40 40 H 1.09005 * 109.47652 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47115 * 60.00333 * 24 22 16 42 42 H 1.09001 * 109.46841 * 180.02562 * 24 22 16 43 43 H 1.09001 * 109.47165 * 299.99679 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3452 1.9928 1.1828 5 1 2.1740 3.0516 1.3085 6 6 2.8913 1.2490 2.2217 7 7 3.4921 0.1082 1.9680 8 14 2.7714 1.8709 3.9790 9 1 2.0528 3.1703 3.9963 10 1 2.0298 0.8836 4.8040 11 1 4.1367 2.0534 4.5338 12 6 2.1462 2.0508 -1.1626 13 8 2.5500 3.1945 -1.1625 14 6 1.7873 1.3785 -2.4627 15 8 2.0072 2.2857 -3.5447 16 6 1.6953 1.7441 -4.8299 17 1 1.8621 0.6670 -4.8204 18 6 0.2294 2.0303 -5.1618 19 6 -0.1043 1.4510 -6.5380 20 6 0.7936 2.0974 -7.5948 21 6 2.2594 1.8112 -7.2629 22 6 2.5931 2.3900 -5.8870 23 1 2.4264 3.4671 -5.8964 24 6 4.0590 2.1038 -5.5550 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8737 -0.4108 2.6932 31 1 2.4097 0.4940 -2.5984 32 1 0.7379 1.0846 -2.4422 33 1 -0.4102 1.5702 -4.4086 34 1 0.0626 3.1074 -5.1712 35 1 0.0626 0.3739 -6.5290 36 1 -1.1485 1.6553 -6.7747 37 1 0.5556 1.6850 -8.5753 38 1 0.6267 3.1745 -7.6038 39 1 2.4263 0.7341 -7.2538 40 1 2.8991 2.2713 -8.0161 41 1 4.2258 1.0267 -5.5456 42 1 4.6987 2.5643 -6.3079 43 1 4.2969 2.5169 -4.5748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112802294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:08 Heat of formation + Delta-G solvation = -119.956353 kcal Electronic energy + Delta-G solvation = -21699.328124 eV Core-core repulsion = 18550.111268 eV Total energy + Delta-G solvation = -3149.216856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81605 -39.97668 -37.42996 -36.74570 -34.06291 -33.49312 -31.24250 -31.02852 -29.16766 -27.09910 -26.29825 -23.95948 -23.27039 -22.20603 -21.16284 -20.58449 -18.81217 -18.15591 -17.20526 -17.10511 -16.68771 -16.19459 -15.65925 -15.53854 -15.16706 -14.97964 -14.61982 -14.54616 -14.05501 -13.95455 -13.63860 -13.58548 -13.23297 -13.13535 -12.87898 -12.77827 -12.65505 -12.47506 -12.29577 -12.08115 -11.95811 -11.85769 -11.75695 -11.46521 -11.29325 -11.17692 -10.92648 -10.34302 -10.30166 -9.50577 -8.36704 -6.06847 1.35220 1.41257 1.55252 1.97087 2.19124 2.51241 2.98403 3.31348 3.71390 3.78630 3.96588 4.01049 4.08854 4.19660 4.27983 4.29577 4.32327 4.40399 4.50897 4.54827 4.58146 4.62088 4.76726 4.82904 4.91642 4.97581 5.00449 5.07209 5.14954 5.19606 5.29256 5.29961 5.31480 5.38317 5.43062 5.44248 5.55628 5.55913 6.12546 6.29824 6.56075 7.16258 7.41972 8.03245 8.65816 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033724 B = 0.004292 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.062158 B = 6522.281482 C = 6856.509204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.089 3.911 3 N -0.449 5.449 4 C -0.344 4.344 5 H 0.061 0.939 6 C 0.006 3.994 7 N -0.886 5.886 8 Si 0.983 3.017 9 H -0.274 1.274 10 H -0.260 1.260 11 H -0.278 1.278 12 C 0.439 3.561 13 O -0.622 6.622 14 C 0.070 3.930 15 O -0.386 6.386 16 C 0.083 3.917 17 H 0.070 0.930 18 C -0.141 4.141 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.087 4.087 23 H 0.060 0.940 24 C -0.144 4.144 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.276 0.724 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -5.284 -16.025 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.034 4.034 3 N -0.169 5.169 4 C -0.472 4.472 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.524 5.524 8 Si 0.806 3.194 9 H -0.198 1.198 10 H -0.184 1.184 11 H -0.203 1.203 12 C 0.228 3.772 13 O -0.509 6.509 14 C -0.010 4.010 15 O -0.305 6.305 16 C 0.026 3.974 17 H 0.088 0.912 18 C -0.179 4.179 19 C -0.148 4.148 20 C -0.158 4.158 21 C -0.142 4.142 22 C -0.105 4.105 23 H 0.079 0.921 24 C -0.201 4.201 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.518 -4.717 -15.891 17.812 hybrid contribution 0.201 0.313 1.223 1.279 sum -6.318 -4.404 -14.667 16.566 Atomic orbital electron populations 1.22113 0.95108 1.02713 1.01297 1.21798 0.94301 0.83155 1.04123 1.43776 1.55835 1.13237 1.04079 1.19426 1.42362 0.94907 0.90462 0.92094 1.26066 0.93315 0.96530 1.03784 1.69966 1.32468 1.15732 1.34219 0.85055 0.78234 0.78696 0.77396 1.19815 1.18398 1.20336 1.21021 0.82164 0.87850 0.86141 1.90482 1.51756 1.21020 1.87607 1.22142 1.01484 0.92019 0.85355 1.88033 1.87866 1.39961 1.14605 1.22465 0.94984 0.97741 0.82219 0.91222 1.22045 0.95540 1.01506 0.98808 1.21488 1.00204 1.00521 0.92596 1.21585 0.94203 1.00897 0.99114 1.21552 0.97089 1.01495 0.94068 1.21200 0.94530 1.00199 0.94606 0.92144 1.21746 0.95860 1.01699 1.00812 0.93921 0.92932 0.89246 0.91537 0.88718 0.91454 0.90219 0.89488 0.92060 0.92636 0.90893 0.90591 0.89801 0.92370 0.90870 0.90259 0.92163 0.91208 0.95195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 10.15 71.98 0.73 -4.54 16 2 C 0.09 3.82 5.44 86.38 0.47 4.29 16 3 N -0.45 -23.83 2.56 -635.53 -1.63 -25.46 16 4 C -0.34 -20.13 8.98 84.04 0.75 -19.37 16 5 H 0.06 3.87 7.70 -2.91 -0.02 3.84 16 6 C 0.01 0.30 4.93 84.93 0.42 0.72 16 7 N -0.89 -47.70 11.31 21.66 0.24 -47.46 16 8 Si 0.98 42.67 29.61 68.60 2.03 44.70 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 12 C 0.44 23.45 7.67 87.66 0.67 24.12 16 13 O -0.62 -39.52 16.32 15.96 0.26 -39.26 16 14 C 0.07 2.77 4.83 71.24 0.34 3.11 16 15 O -0.39 -15.47 8.85 -129.94 -1.15 -16.62 16 16 C 0.08 2.35 2.04 30.59 0.06 2.41 16 17 H 0.07 1.76 7.79 -2.39 -0.02 1.74 16 18 C -0.14 -3.40 5.54 30.59 0.17 -3.23 16 19 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 20 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 21 C -0.10 -1.79 5.20 30.57 0.16 -1.63 16 22 C -0.09 -2.18 2.46 -10.81 -0.03 -2.20 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 C -0.14 -3.82 9.05 71.98 0.65 -3.17 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.66 6.62 -2.39 -0.02 1.65 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.52 6.65 -2.39 -0.02 2.50 16 29 H 0.09 4.51 5.32 -2.38 -0.01 4.49 16 30 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.08 2.87 7.35 -2.39 -0.02 2.85 16 32 H 0.09 2.95 6.29 -2.39 -0.02 2.93 16 33 H 0.06 1.48 7.87 -2.39 -0.02 1.46 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.03 1.01 7.68 -2.39 -0.02 1.00 16 Total: -1.00 -72.90 337.39 5.49 -67.41 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.96 Total: 19.50 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 4.77 Total: -2.82 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.38 Total: -72.91 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.89 Total: -55.88 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.90 5.49 -67.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.545 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds