Wall clock time and date at job start Mon Mar 30 2020 01:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47273 * 2 1 4 4 C 1.37105 * 119.99302 * 90.10726 * 3 2 1 5 5 H 1.07993 * 119.99958 * 316.63027 * 4 3 2 6 6 C 1.38953 * 119.99638 * 136.64108 * 4 3 2 7 7 N 1.31407 * 120.00036 * 160.63157 * 6 4 3 8 8 Si 1.86802 * 119.99674 * 340.62867 * 6 4 3 9 9 H 1.48498 * 109.47102 * 94.18462 * 8 6 4 10 10 H 1.48504 * 109.46860 * 214.18128 * 8 6 4 11 11 H 1.48497 * 109.47361 * 334.18142 * 8 6 4 12 12 C 1.34780 * 120.00264 * 270.11369 * 3 2 1 13 13 O 1.21291 * 119.99748 * 180.02562 * 12 3 2 14 14 C 1.50697 * 119.99685 * 359.97438 * 12 3 2 15 15 O 1.42906 * 109.46564 * 180.02562 * 14 12 3 16 16 C 1.42901 * 113.99860 * 180.02562 * 15 14 12 17 17 H 1.09008 * 109.47119 * 29.99804 * 16 15 14 18 18 C 1.53000 * 109.47439 * 270.00283 * 16 15 14 19 19 C 1.52993 * 109.47659 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47199 * 59.99343 * 19 18 16 21 21 C 1.53004 * 109.47231 * 300.00322 * 20 19 18 22 22 C 1.52995 * 109.47164 * 149.99782 * 16 15 14 23 23 H 1.09000 * 109.46811 * 60.00175 * 22 16 15 24 24 C 1.52997 * 109.47446 * 299.99887 * 22 16 15 25 25 H 1.09005 * 109.46459 * 304.36478 * 1 2 3 26 26 H 1.08991 * 109.47483 * 64.36510 * 1 2 3 27 27 H 1.09002 * 109.46657 * 184.36838 * 1 2 3 28 28 H 1.09000 * 109.46620 * 240.00797 * 2 1 3 29 29 H 1.08990 * 109.47395 * 120.00513 * 2 1 3 30 30 H 0.97000 * 119.99974 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47407 * 300.00233 * 14 12 3 32 32 H 1.09003 * 109.47145 * 60.00573 * 14 12 3 33 33 H 1.09008 * 109.46573 * 299.99855 * 18 16 15 34 34 H 1.09003 * 109.47122 * 59.99416 * 18 16 15 35 35 H 1.09000 * 109.46860 * 299.99837 * 19 18 16 36 36 H 1.08997 * 109.47501 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47367 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47516 * 60.00249 * 20 19 18 39 39 H 1.09000 * 109.47340 * 299.99819 * 21 20 19 40 40 H 1.09011 * 109.46992 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46881 * 60.00228 * 24 22 16 42 42 H 1.08994 * 109.47433 * 179.97438 * 24 22 16 43 43 H 1.08994 * 109.47101 * 300.00333 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2490 2.0267 1.1874 5 1 1.5386 1.9396 1.9962 6 6 3.3966 2.7930 1.3502 7 7 3.4518 3.7003 2.2992 8 14 4.8610 2.5333 0.2199 9 1 4.7885 3.4915 -0.9123 10 1 6.1178 2.7578 0.9786 11 1 4.8411 1.1444 -0.3051 12 6 2.2409 2.0174 -1.1672 13 8 2.6457 3.1608 -1.1671 14 6 1.9878 1.3077 -2.4723 15 8 2.2958 2.1838 -3.5584 16 6 2.0886 1.6054 -4.8485 17 1 1.2840 0.8720 -4.7929 18 6 3.3744 0.9175 -5.3116 19 6 3.1527 0.2987 -6.6932 20 6 2.7746 1.3968 -7.6891 21 6 1.4887 2.0846 -7.2260 22 6 1.7101 2.7031 -5.8448 23 1 2.5146 3.4364 -5.9004 24 6 0.4242 3.3908 -5.3818 25 1 -0.3632 0.5801 0.8484 26 1 -0.3634 0.4446 -0.9264 27 1 -0.3633 -1.0247 0.0783 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 4.2530 4.2350 2.4130 31 1 2.6182 0.4204 -2.5316 32 1 0.9398 1.0132 -2.5285 33 1 4.1789 1.6509 -5.3673 34 1 3.6440 0.1355 -4.6018 35 1 2.3481 -0.4345 -6.6380 36 1 4.0686 -0.1917 -7.0229 37 1 2.6162 0.9559 -8.6733 38 1 3.5791 2.1301 -7.7444 39 1 0.6840 1.3514 -7.1709 40 1 1.2195 2.8673 -7.9355 41 1 0.5823 3.8321 -4.3977 42 1 0.1548 4.1731 -6.0913 43 1 -0.3802 2.6575 -5.3261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112802296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:11 Heat of formation + Delta-G solvation = -92.240623 kcal Electronic energy + Delta-G solvation = -22064.018505 eV Core-core repulsion = 18916.003493 eV Total energy + Delta-G solvation = -3148.015012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.56486 -38.66262 -36.15731 -34.79067 -32.61613 -32.27122 -30.09240 -29.64086 -27.77378 -26.09097 -24.11461 -22.58603 -22.17281 -21.33236 -20.00130 -19.31107 -17.23311 -16.41961 -15.96306 -15.53737 -15.01006 -14.86427 -14.42220 -14.34465 -13.87133 -13.52510 -13.15770 -13.11044 -12.94669 -12.81383 -12.32866 -12.24579 -12.11767 -11.95334 -11.82801 -11.50345 -11.17307 -11.03204 -10.93897 -10.78423 -10.65883 -10.47114 -10.40039 -10.21822 -10.07314 -9.88885 -9.16888 -8.49365 -8.37126 -7.54706 -6.15374 -3.92576 3.33875 3.50207 3.63837 3.74064 3.89258 4.54162 4.61801 4.63866 4.67982 4.88057 5.05652 5.12062 5.23626 5.24856 5.35172 5.38706 5.41566 5.44304 5.51323 5.62721 5.63191 5.69051 5.71054 5.84979 5.89460 5.90919 5.97903 6.00797 6.04590 6.07546 6.19669 6.20653 6.24184 6.37529 6.44365 6.48455 6.70847 7.46297 7.89782 8.06142 8.82095 8.98622 9.47322 9.87153 10.90461 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.005629 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.081455 B = 4973.286214 C = 5303.110547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.465 5.465 4 C -0.349 4.349 5 H 0.094 0.906 6 C 0.093 3.907 7 N -0.866 5.866 8 Si 0.905 3.095 9 H -0.251 1.251 10 H -0.306 1.306 11 H -0.283 1.283 12 C 0.449 3.551 13 O -0.523 6.523 14 C 0.050 3.950 15 O -0.351 6.351 16 C 0.092 3.908 17 H 0.057 0.943 18 C -0.145 4.145 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.087 4.087 23 H 0.078 0.922 24 C -0.146 4.146 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.272 0.728 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -9.173 -17.660 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.190 5.190 4 C -0.475 4.475 5 H 0.111 0.889 6 C -0.116 4.116 7 N -0.501 5.501 8 Si 0.735 3.265 9 H -0.177 1.177 10 H -0.235 1.235 11 H -0.208 1.208 12 C 0.238 3.762 13 O -0.403 6.403 14 C -0.031 4.031 15 O -0.269 6.269 16 C 0.034 3.966 17 H 0.075 0.925 18 C -0.183 4.183 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.105 4.105 23 H 0.096 0.904 24 C -0.203 4.203 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.737 -8.244 -17.519 19.719 hybrid contribution 0.643 -0.556 -0.434 0.954 sum -3.094 -8.800 -17.953 20.231 Atomic orbital electron populations 1.22162 0.96986 1.00864 1.02299 1.21597 0.93968 0.85506 1.01551 1.43601 1.60337 1.10107 1.04945 1.18740 1.07022 1.30700 0.91031 0.88881 1.25287 0.98182 0.93181 0.94908 1.69755 1.28771 1.18320 1.33245 0.86483 0.79472 0.79022 0.81517 1.17659 1.23543 1.20817 1.20068 0.84104 0.87487 0.84565 1.90567 1.46065 1.17654 1.86044 1.22395 0.99712 0.93101 0.87858 1.88081 1.87963 1.38584 1.12235 1.22133 0.95860 0.94691 0.83954 0.92515 1.22081 0.99114 1.00465 0.96628 1.21482 1.01336 0.97767 0.94694 1.21575 0.97984 0.98107 0.98278 1.21580 0.97622 0.99792 0.95871 1.21158 0.99040 0.97103 0.93249 0.90386 1.21774 0.96188 1.00015 1.02363 0.91797 0.93347 0.92727 0.92837 0.90411 0.91848 0.92205 0.91559 0.90992 0.91850 0.92058 0.91875 0.92055 0.91812 0.91963 0.91568 0.91150 0.92980 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.10 1.79 5.90 -4.04 -0.02 1.76 16 3 N -0.47 -11.37 2.14 -114.81 -0.25 -11.62 16 4 C -0.35 -10.05 9.68 -14.93 -0.14 -10.19 16 5 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 6 C 0.09 2.83 4.84 -17.47 -0.08 2.75 16 7 N -0.87 -27.12 13.96 55.50 0.77 -26.34 16 8 Si 0.90 25.03 24.89 -169.99 -4.23 20.80 16 9 H -0.25 -7.41 6.32 56.52 0.36 -7.05 16 10 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 11 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 12 C 0.45 11.21 5.97 -10.99 -0.07 11.15 16 13 O -0.52 -15.53 12.12 -14.36 -0.17 -15.70 16 14 C 0.05 0.94 4.78 36.00 0.17 1.11 16 15 O -0.35 -6.79 8.85 -55.14 -0.49 -7.27 16 16 C 0.09 1.30 2.04 -26.73 -0.05 1.25 16 17 H 0.06 0.72 7.79 -51.92 -0.40 0.32 16 18 C -0.15 -1.84 5.54 -26.73 -0.15 -1.99 16 19 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.11 -1.07 5.20 -26.75 -0.14 -1.21 16 22 C -0.09 -1.10 2.46 -90.65 -0.22 -1.32 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 24 C -0.15 -1.87 9.05 37.16 0.34 -1.54 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.72 7.17 -51.93 -0.37 0.35 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 29 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 30 H 0.27 8.02 8.31 -40.82 -0.34 7.68 16 31 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 32 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 33 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -34.71 333.31 -7.40 -42.11 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.75 Total: -4.07 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.31 Total: -2.94 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.53 Total: -37.96 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.66 Total: -22.97 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.23 Total: 20.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.71 -7.40 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.127 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds