Wall clock time and date at job start Mon Mar 30 2020 01:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47273 * 2 1 4 4 C 1.37105 * 119.99302 * 90.10726 * 3 2 1 5 5 H 1.07993 * 119.99958 * 316.63027 * 4 3 2 6 6 C 1.38953 * 119.99638 * 136.64108 * 4 3 2 7 7 N 1.31407 * 120.00036 * 160.63157 * 6 4 3 8 8 Si 1.86802 * 119.99674 * 340.62867 * 6 4 3 9 9 H 1.48498 * 109.47102 * 94.18462 * 8 6 4 10 10 H 1.48504 * 109.46860 * 214.18128 * 8 6 4 11 11 H 1.48497 * 109.47361 * 334.18142 * 8 6 4 12 12 C 1.34780 * 120.00264 * 270.11369 * 3 2 1 13 13 O 1.21291 * 119.99748 * 180.02562 * 12 3 2 14 14 C 1.50697 * 119.99685 * 359.97438 * 12 3 2 15 15 O 1.42906 * 109.46564 * 180.02562 * 14 12 3 16 16 C 1.42901 * 113.99860 * 180.02562 * 15 14 12 17 17 H 1.09008 * 109.47119 * 29.99804 * 16 15 14 18 18 C 1.53000 * 109.47439 * 270.00283 * 16 15 14 19 19 C 1.52993 * 109.47659 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47199 * 59.99343 * 19 18 16 21 21 C 1.53004 * 109.47231 * 300.00322 * 20 19 18 22 22 C 1.52995 * 109.47164 * 149.99782 * 16 15 14 23 23 H 1.09000 * 109.46811 * 60.00175 * 22 16 15 24 24 C 1.52997 * 109.47446 * 299.99887 * 22 16 15 25 25 H 1.09005 * 109.46459 * 304.36478 * 1 2 3 26 26 H 1.08991 * 109.47483 * 64.36510 * 1 2 3 27 27 H 1.09002 * 109.46657 * 184.36838 * 1 2 3 28 28 H 1.09000 * 109.46620 * 240.00797 * 2 1 3 29 29 H 1.08990 * 109.47395 * 120.00513 * 2 1 3 30 30 H 0.97000 * 119.99974 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47407 * 300.00233 * 14 12 3 32 32 H 1.09003 * 109.47145 * 60.00573 * 14 12 3 33 33 H 1.09008 * 109.46573 * 299.99855 * 18 16 15 34 34 H 1.09003 * 109.47122 * 59.99416 * 18 16 15 35 35 H 1.09000 * 109.46860 * 299.99837 * 19 18 16 36 36 H 1.08997 * 109.47501 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47367 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47516 * 60.00249 * 20 19 18 39 39 H 1.09000 * 109.47340 * 299.99819 * 21 20 19 40 40 H 1.09011 * 109.46992 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46881 * 60.00228 * 24 22 16 42 42 H 1.08994 * 109.47433 * 179.97438 * 24 22 16 43 43 H 1.08994 * 109.47101 * 300.00333 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2490 2.0267 1.1874 5 1 1.5386 1.9396 1.9962 6 6 3.3966 2.7930 1.3502 7 7 3.4518 3.7003 2.2992 8 14 4.8610 2.5333 0.2199 9 1 4.7885 3.4915 -0.9123 10 1 6.1178 2.7578 0.9786 11 1 4.8411 1.1444 -0.3051 12 6 2.2409 2.0174 -1.1672 13 8 2.6457 3.1608 -1.1671 14 6 1.9878 1.3077 -2.4723 15 8 2.2958 2.1838 -3.5584 16 6 2.0886 1.6054 -4.8485 17 1 1.2840 0.8720 -4.7929 18 6 3.3744 0.9175 -5.3116 19 6 3.1527 0.2987 -6.6932 20 6 2.7746 1.3968 -7.6891 21 6 1.4887 2.0846 -7.2260 22 6 1.7101 2.7031 -5.8448 23 1 2.5146 3.4364 -5.9004 24 6 0.4242 3.3908 -5.3818 25 1 -0.3632 0.5801 0.8484 26 1 -0.3634 0.4446 -0.9264 27 1 -0.3633 -1.0247 0.0783 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 4.2530 4.2350 2.4130 31 1 2.6182 0.4204 -2.5316 32 1 0.9398 1.0132 -2.5285 33 1 4.1789 1.6509 -5.3673 34 1 3.6440 0.1355 -4.6018 35 1 2.3481 -0.4345 -6.6380 36 1 4.0686 -0.1917 -7.0229 37 1 2.6162 0.9559 -8.6733 38 1 3.5791 2.1301 -7.7444 39 1 0.6840 1.3514 -7.1709 40 1 1.2195 2.8673 -7.9355 41 1 0.5823 3.8321 -4.3977 42 1 0.1548 4.1731 -6.0913 43 1 -0.3802 2.6575 -5.3261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112802296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:10 Heat of formation + Delta-G solvation = -114.335276 kcal Electronic energy + Delta-G solvation = -22064.976601 eV Core-core repulsion = 18916.003493 eV Total energy + Delta-G solvation = -3148.973108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02888 -40.11988 -37.41132 -36.65848 -34.45846 -33.50897 -31.29686 -31.08700 -29.33250 -27.08430 -26.02453 -23.99920 -23.25278 -22.21674 -21.39294 -20.77992 -19.07453 -17.86787 -17.75513 -17.10278 -16.54917 -16.25998 -15.63881 -15.37266 -15.20216 -15.08435 -14.77141 -14.62550 -14.17739 -14.07534 -14.02799 -13.80513 -13.43009 -13.15002 -12.88185 -12.79080 -12.63993 -12.46508 -12.26661 -12.03752 -12.00366 -11.87923 -11.76221 -11.46886 -11.29182 -11.18476 -10.80365 -10.40114 -10.29585 -9.58682 -8.45940 -6.20904 1.16000 1.29365 1.48098 1.90217 2.20953 2.41455 2.99753 3.18652 3.67820 3.76886 3.88933 3.99263 4.04110 4.17979 4.24671 4.28084 4.29604 4.31137 4.49200 4.52896 4.53395 4.56837 4.70404 4.76358 4.90799 4.96951 4.99129 5.05522 5.08910 5.13420 5.18404 5.27936 5.30105 5.37229 5.42595 5.43468 5.54298 5.69535 5.83622 6.26597 6.76733 6.90872 7.30869 7.86740 8.63459 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.005629 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.081455 B = 4973.286214 C = 5303.110547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.089 3.911 3 N -0.477 5.477 4 C -0.343 4.343 5 H 0.071 0.929 6 C 0.045 3.955 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.286 1.286 10 H -0.298 1.298 11 H -0.259 1.259 12 C 0.438 3.562 13 O -0.582 6.582 14 C 0.061 3.939 15 O -0.389 6.389 16 C 0.085 3.915 17 H 0.080 0.920 18 C -0.145 4.145 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.104 4.104 22 C -0.088 4.088 23 H 0.054 0.946 24 C -0.143 4.143 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.272 0.728 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -12.448 -20.612 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.033 4.033 3 N -0.201 5.201 4 C -0.470 4.470 5 H 0.088 0.912 6 C -0.159 4.159 7 N -0.547 5.547 8 Si 0.785 3.215 9 H -0.213 1.213 10 H -0.227 1.227 11 H -0.183 1.183 12 C 0.229 3.771 13 O -0.466 6.466 14 C -0.018 4.018 15 O -0.308 6.308 16 C 0.028 3.972 17 H 0.098 0.902 18 C -0.183 4.183 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.141 4.141 22 C -0.107 4.107 23 H 0.073 0.927 24 C -0.200 4.200 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.741 -11.593 -20.471 23.999 hybrid contribution 0.831 0.469 0.444 1.053 sum -3.910 -11.123 -20.028 23.240 Atomic orbital electron populations 1.22095 0.94736 1.03176 1.01493 1.21949 0.95754 0.81997 1.03620 1.43874 1.60143 1.12535 1.03561 1.18713 1.05837 1.30434 0.92056 0.91159 1.25924 1.00532 0.93436 0.95994 1.69836 1.29551 1.20006 1.35335 0.85660 0.77744 0.79133 0.79011 1.21331 1.22696 1.18335 1.21197 0.82136 0.87146 0.86656 1.90533 1.48422 1.20478 1.87188 1.22275 1.02228 0.92582 0.84724 1.88061 1.88506 1.40132 1.14097 1.22467 0.97333 0.95576 0.81864 0.90183 1.22088 0.97674 0.99866 0.98695 1.21473 1.02524 0.98023 0.92655 1.21594 0.97312 0.97795 0.99233 1.21549 0.98456 1.00375 0.93718 1.21209 0.97982 0.96564 0.94963 0.92734 1.21735 0.96962 1.00789 1.00524 0.94554 0.92586 0.88458 0.88918 0.90219 0.91840 0.89308 0.88147 0.93210 0.91888 0.90414 0.90848 0.89780 0.92794 0.90406 0.90473 0.95074 0.91548 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 10.24 71.98 0.74 -3.61 16 2 C 0.09 2.97 5.90 86.38 0.51 3.48 16 3 N -0.48 -22.89 2.14 -635.54 -1.36 -24.25 16 4 C -0.34 -20.13 9.68 84.04 0.81 -19.32 16 5 H 0.07 4.35 8.06 -2.91 -0.02 4.32 16 6 C 0.05 2.83 4.84 84.93 0.41 3.24 16 7 N -0.91 -59.15 13.96 21.66 0.30 -58.85 16 8 Si 0.96 52.94 24.89 68.60 1.71 54.65 16 9 H -0.29 -17.41 6.32 99.48 0.63 -16.78 16 10 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 11 H -0.26 -13.09 7.11 99.48 0.71 -12.38 16 12 C 0.44 21.59 5.97 87.66 0.52 22.11 16 13 O -0.58 -35.45 12.12 15.97 0.19 -35.25 16 14 C 0.06 2.17 4.78 71.23 0.34 2.51 16 15 O -0.39 -14.66 8.85 -129.94 -1.15 -15.81 16 16 C 0.08 2.20 2.04 30.59 0.06 2.26 16 17 H 0.08 1.70 7.79 -2.38 -0.02 1.68 16 18 C -0.15 -3.36 5.54 30.59 0.17 -3.19 16 19 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 20 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 21 C -0.10 -1.64 5.20 30.58 0.16 -1.48 16 22 C -0.09 -2.10 2.46 -10.81 -0.03 -2.13 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 C -0.14 -3.49 9.05 71.98 0.65 -2.84 16 25 H 0.04 1.19 8.14 -2.38 -0.02 1.18 16 26 H 0.06 1.46 7.17 -2.39 -0.02 1.44 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.40 6.44 -2.39 -0.02 2.38 16 29 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 30 H 0.27 16.75 8.31 -92.71 -0.77 15.98 16 31 H 0.09 2.62 7.13 -2.39 -0.02 2.61 16 32 H 0.10 2.84 7.08 -2.39 -0.02 2.82 16 33 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.06 1.43 7.87 -2.39 -0.02 1.41 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.03 0.99 7.68 -2.39 -0.02 0.97 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -80.53 333.31 5.28 -75.25 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.87 Total: 6.37 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 4.71 Total: -2.10 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.06 Total: -83.10 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.96 Total: -51.06 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.71 Total: 54.65 kcal Total: -80.53 5.28 -75.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.088 kcal (2) G-P(sol) polarization free energy of solvation -80.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds