Wall clock time and date at job start Mon Mar 30 2020 01:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47050 * 2 1 4 4 C 1.37101 * 119.99927 * 264.74585 * 3 2 1 5 5 H 1.07999 * 120.00009 * 146.16503 * 4 3 2 6 6 C 1.38944 * 120.00261 * 326.17032 * 4 3 2 7 7 N 1.31411 * 119.99937 * 337.68021 * 6 4 3 8 8 Si 1.86806 * 120.00314 * 157.67850 * 6 4 3 9 9 H 1.48495 * 109.46679 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46832 * 120.00179 * 8 6 4 11 11 H 1.48501 * 109.46984 * 240.00067 * 8 6 4 12 12 C 1.34771 * 120.00222 * 84.74730 * 3 2 1 13 13 O 1.21294 * 120.00461 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00233 * 0.02562 * 12 3 2 15 15 O 1.42894 * 109.47689 * 179.97438 * 14 12 3 16 16 C 1.42897 * 114.00253 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47169 * 329.99823 * 16 15 14 18 18 C 1.52997 * 109.47067 * 90.00285 * 16 15 14 19 19 C 1.52998 * 109.47394 * 60.00137 * 18 16 15 20 20 C 1.53002 * 109.47254 * 59.99741 * 19 18 16 21 21 C 1.52997 * 109.47131 * 300.00420 * 20 19 18 22 22 C 1.52998 * 109.47394 * 59.99666 * 21 20 19 23 23 H 1.09005 * 109.46951 * 59.99835 * 22 21 20 24 24 C 1.52997 * 109.47394 * 179.97438 * 22 21 20 25 25 H 1.09005 * 109.46897 * 60.00176 * 1 2 3 26 26 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46978 * 300.00316 * 1 2 3 28 28 H 1.08997 * 109.46978 * 239.99684 * 2 1 3 29 29 H 1.08997 * 109.46828 * 120.00090 * 2 1 3 30 30 H 0.96997 * 120.00577 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46972 * 59.99325 * 14 12 3 32 32 H 1.09002 * 109.46780 * 300.00402 * 14 12 3 33 33 H 1.09005 * 109.47207 * 180.02562 * 18 16 15 34 34 H 1.09000 * 109.47012 * 300.00296 * 18 16 15 35 35 H 1.08993 * 109.47248 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.46951 * 300.00165 * 19 18 16 37 37 H 1.08998 * 109.46680 * 59.99960 * 20 19 18 38 38 H 1.08999 * 109.47358 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46923 * 180.02562 * 21 20 19 40 40 H 1.09005 * 109.47207 * 299.99657 * 21 20 19 41 41 H 1.08998 * 109.47503 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.47012 * 299.99841 * 24 22 21 43 43 H 1.08991 * 109.47165 * 60.00041 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1815 3.0505 -1.3089 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7824 1.8629 -3.9773 9 1 2.0591 3.1596 -4.0000 10 1 4.1484 2.0489 -4.5294 11 1 2.0464 0.8704 -4.8010 12 6 2.1422 2.0521 1.1622 13 8 2.5470 3.1956 1.1623 14 6 1.7790 1.3815 2.4620 15 8 1.9952 2.2899 3.5436 16 6 1.6790 1.7499 4.8282 17 1 0.8812 1.0142 4.7268 18 6 2.9203 1.0780 5.4186 19 6 4.0402 2.1106 5.5611 20 6 3.5803 3.2372 6.4886 21 6 2.3390 3.9091 5.8983 22 6 1.2191 2.8764 5.7558 23 1 0.9779 2.4645 6.7358 24 6 -0.0224 3.5485 5.1661 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8897 -0.4113 -2.6823 31 1 2.4010 0.4971 2.6007 32 1 0.7297 1.0874 2.4382 33 1 2.6790 0.6657 6.3984 34 1 3.2481 0.2755 4.7577 35 1 4.9247 1.6319 5.9812 36 1 4.2814 2.5226 4.5811 37 1 3.3390 2.8252 7.4685 38 1 4.3779 3.9731 6.5898 39 1 2.0116 4.7119 6.5589 40 1 2.5801 4.3210 4.9183 41 1 -0.8204 2.8129 5.0650 42 1 -0.3500 4.3507 5.8273 43 1 0.2184 3.9607 4.1863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112802298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:12 Heat of formation + Delta-G solvation = -100.002624 kcal Electronic energy + Delta-G solvation = -21997.003412 eV Core-core repulsion = 18848.651814 eV Total energy + Delta-G solvation = -3148.351597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47247 -38.30722 -35.68731 -34.75758 -32.46537 -32.03608 -30.01491 -29.45746 -27.57736 -25.95936 -24.39479 -22.39704 -22.20059 -21.22216 -19.45340 -19.01294 -16.79804 -16.15027 -15.90688 -15.58818 -15.01994 -14.65942 -14.36688 -14.09807 -13.88116 -13.49123 -13.02923 -12.94235 -12.76890 -12.68759 -12.11115 -11.96336 -11.80156 -11.65060 -11.38368 -11.30922 -11.25302 -11.06335 -10.90328 -10.71033 -10.44004 -10.32827 -10.29363 -10.16046 -10.07593 -9.80661 -9.07413 -8.90968 -8.27923 -7.47553 -6.31887 -3.92446 3.16621 3.27490 3.34137 3.81559 3.94143 4.26343 4.75510 4.85004 4.90151 5.01584 5.15904 5.26619 5.29139 5.41529 5.55233 5.58475 5.60984 5.68988 5.72732 5.79178 5.86201 5.93672 5.94363 5.98267 6.05200 6.08585 6.21556 6.27602 6.32573 6.33657 6.43802 6.44111 6.49397 6.54256 6.71688 6.87042 7.25606 7.59821 7.61618 8.27431 8.55032 9.22212 9.42667 10.04368 10.72160 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.004705 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.868561 B = 5950.263434 C = 6075.791353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.442 5.442 4 C -0.303 4.303 5 H 0.093 0.907 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.917 3.083 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.461 3.539 13 O -0.563 6.563 14 C 0.050 3.950 15 O -0.345 6.345 16 C 0.089 3.911 17 H 0.055 0.945 18 C -0.140 4.140 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.082 4.082 23 H 0.073 0.927 24 C -0.147 4.147 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.115 0.885 29 H 0.045 0.955 30 H 0.267 0.733 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 -1.726 13.508 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.163 5.163 4 C -0.430 4.430 5 H 0.111 0.889 6 C -0.170 4.170 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.248 3.752 13 O -0.444 6.444 14 C -0.030 4.030 15 O -0.263 6.263 16 C 0.031 3.969 17 H 0.073 0.927 18 C -0.178 4.178 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.101 4.101 23 H 0.091 0.909 24 C -0.204 4.204 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.133 0.867 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.551 -1.097 13.365 14.162 hybrid contribution -0.126 -0.424 -0.788 0.904 sum -4.677 -1.522 12.578 13.505 Atomic orbital electron populations 1.22225 0.98231 1.00341 1.01539 1.21612 0.91727 0.85557 1.04146 1.43471 1.56414 1.11877 1.04570 1.19499 1.39538 0.95536 0.88455 0.88945 1.25326 0.94540 0.96557 1.00541 1.69928 1.32890 1.15378 1.32770 0.86011 0.78127 0.79109 0.82348 1.19160 1.20792 1.20621 1.19984 0.82869 0.88192 0.84174 1.90537 1.49011 1.18416 1.86451 1.22396 0.99705 0.92868 0.88025 1.88058 1.87418 1.38198 1.12621 1.22101 0.95311 0.94822 0.84684 0.92735 1.22012 0.96694 0.98430 1.00637 1.21426 0.96961 0.96019 1.00983 1.21494 0.97723 0.97826 0.98212 1.21531 0.94335 0.97122 1.02059 1.21173 0.95687 0.95766 0.97451 0.90866 1.21786 0.96449 1.00090 1.02109 0.92290 0.93051 0.94039 0.86708 0.93661 0.92313 0.92013 0.92217 0.91684 0.91880 0.92702 0.90571 0.92779 0.92304 0.92648 0.90362 0.93272 0.93088 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.15 37.16 0.38 -2.58 16 2 C 0.09 2.03 5.43 -4.04 -0.02 2.01 16 3 N -0.44 -11.35 2.56 -114.82 -0.29 -11.64 16 4 C -0.30 -8.49 8.98 -14.93 -0.13 -8.62 16 5 H 0.09 2.73 7.70 -52.49 -0.40 2.33 16 6 C 0.03 0.90 4.92 -17.47 -0.09 0.81 16 7 N -0.87 -23.47 11.33 55.50 0.63 -22.84 16 8 Si 0.92 20.65 29.61 -169.99 -5.03 15.62 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 12 C 0.46 11.71 7.67 -10.99 -0.08 11.63 16 13 O -0.56 -16.57 16.32 -14.36 -0.23 -16.80 16 14 C 0.05 0.98 4.83 36.01 0.17 1.16 16 15 O -0.35 -6.53 7.50 -55.14 -0.41 -6.94 16 16 C 0.09 1.27 2.35 -26.73 -0.06 1.21 16 17 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 18 C -0.14 -1.81 5.63 -26.73 -0.15 -1.96 16 19 C -0.12 -1.57 5.78 -26.73 -0.15 -1.73 16 20 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.11 -1.47 5.06 -26.73 -0.14 -1.61 16 22 C -0.08 -1.04 2.55 -90.62 -0.23 -1.27 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 C -0.15 -1.87 9.05 37.16 0.34 -1.53 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.69 6.60 -51.93 -0.34 0.35 16 28 H 0.12 2.75 5.34 -51.93 -0.28 2.47 16 29 H 0.04 0.89 6.66 -51.93 -0.35 0.54 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.06 1.13 7.14 -51.93 -0.37 0.76 16 32 H 0.06 1.04 6.48 -51.93 -0.34 0.70 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.26 7.68 -51.93 -0.40 0.86 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -31.27 335.31 -8.07 -39.35 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.45 Total: 2.22 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.33 Total: -4.02 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.34 Total: -34.48 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.65 Total: -23.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.27 -8.07 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.657 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds