Wall clock time and date at job start Mon Mar 30 2020 01:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47050 * 2 1 4 4 C 1.37101 * 119.99927 * 264.74585 * 3 2 1 5 5 H 1.07999 * 120.00009 * 146.16503 * 4 3 2 6 6 C 1.38944 * 120.00261 * 326.17032 * 4 3 2 7 7 N 1.31411 * 119.99937 * 337.68021 * 6 4 3 8 8 Si 1.86806 * 120.00314 * 157.67850 * 6 4 3 9 9 H 1.48495 * 109.46679 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46832 * 120.00179 * 8 6 4 11 11 H 1.48501 * 109.46984 * 240.00067 * 8 6 4 12 12 C 1.34771 * 120.00222 * 84.74730 * 3 2 1 13 13 O 1.21294 * 120.00461 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00233 * 0.02562 * 12 3 2 15 15 O 1.42894 * 109.47689 * 179.97438 * 14 12 3 16 16 C 1.42897 * 114.00253 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47169 * 329.99823 * 16 15 14 18 18 C 1.52997 * 109.47067 * 90.00285 * 16 15 14 19 19 C 1.52998 * 109.47394 * 60.00137 * 18 16 15 20 20 C 1.53002 * 109.47254 * 59.99741 * 19 18 16 21 21 C 1.52997 * 109.47131 * 300.00420 * 20 19 18 22 22 C 1.52998 * 109.47394 * 59.99666 * 21 20 19 23 23 H 1.09005 * 109.46951 * 59.99835 * 22 21 20 24 24 C 1.52997 * 109.47394 * 179.97438 * 22 21 20 25 25 H 1.09005 * 109.46897 * 60.00176 * 1 2 3 26 26 H 1.09002 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46978 * 300.00316 * 1 2 3 28 28 H 1.08997 * 109.46978 * 239.99684 * 2 1 3 29 29 H 1.08997 * 109.46828 * 120.00090 * 2 1 3 30 30 H 0.96997 * 120.00577 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46972 * 59.99325 * 14 12 3 32 32 H 1.09002 * 109.46780 * 300.00402 * 14 12 3 33 33 H 1.09005 * 109.47207 * 180.02562 * 18 16 15 34 34 H 1.09000 * 109.47012 * 300.00296 * 18 16 15 35 35 H 1.08993 * 109.47248 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.46951 * 300.00165 * 19 18 16 37 37 H 1.08998 * 109.46680 * 59.99960 * 20 19 18 38 38 H 1.08999 * 109.47358 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46923 * 180.02562 * 21 20 19 40 40 H 1.09005 * 109.47207 * 299.99657 * 21 20 19 41 41 H 1.08998 * 109.47503 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.47012 * 299.99841 * 24 22 21 43 43 H 1.08991 * 109.47165 * 60.00041 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1815 3.0505 -1.3089 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7824 1.8629 -3.9773 9 1 2.0591 3.1596 -4.0000 10 1 4.1484 2.0489 -4.5294 11 1 2.0464 0.8704 -4.8010 12 6 2.1422 2.0521 1.1622 13 8 2.5470 3.1956 1.1623 14 6 1.7790 1.3815 2.4620 15 8 1.9952 2.2899 3.5436 16 6 1.6790 1.7499 4.8282 17 1 0.8812 1.0142 4.7268 18 6 2.9203 1.0780 5.4186 19 6 4.0402 2.1106 5.5611 20 6 3.5803 3.2372 6.4886 21 6 2.3390 3.9091 5.8983 22 6 1.2191 2.8764 5.7558 23 1 0.9779 2.4645 6.7358 24 6 -0.0224 3.5485 5.1661 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8897 -0.4113 -2.6823 31 1 2.4010 0.4971 2.6007 32 1 0.7297 1.0874 2.4382 33 1 2.6790 0.6657 6.3984 34 1 3.2481 0.2755 4.7577 35 1 4.9247 1.6319 5.9812 36 1 4.2814 2.5226 4.5811 37 1 3.3390 2.8252 7.4685 38 1 4.3779 3.9731 6.5898 39 1 2.0116 4.7119 6.5589 40 1 2.5801 4.3210 4.9183 41 1 -0.8204 2.8129 5.0650 42 1 -0.3500 4.3507 5.8273 43 1 0.2184 3.9607 4.1863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112802298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:12 Heat of formation + Delta-G solvation = -117.633087 kcal Electronic energy + Delta-G solvation = -21997.767926 eV Core-core repulsion = 18848.651814 eV Total energy + Delta-G solvation = -3149.116112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84321 -39.98447 -37.17737 -36.58702 -34.04866 -33.46638 -31.23944 -31.08113 -29.22483 -27.08811 -26.28044 -23.95201 -23.38931 -22.25464 -20.98007 -20.45515 -18.77190 -17.86359 -17.24852 -17.17403 -16.63176 -16.06516 -15.91083 -15.62985 -15.15221 -14.75962 -14.59486 -14.40507 -14.16392 -13.88505 -13.61344 -13.44890 -13.36493 -13.01113 -12.88634 -12.68781 -12.51165 -12.43112 -12.39496 -12.22968 -12.06821 -11.85217 -11.73849 -11.39160 -11.31145 -10.93706 -10.81687 -10.32106 -10.26474 -9.49617 -8.36547 -6.06036 1.35068 1.40876 1.54942 1.99286 2.21532 2.56306 2.98802 3.37572 3.76560 3.83483 3.92446 4.01918 4.11599 4.24626 4.27754 4.30256 4.41348 4.45152 4.57539 4.62352 4.63035 4.66104 4.79454 4.83832 4.92493 4.97720 5.00931 5.06635 5.09902 5.24321 5.30262 5.31740 5.37618 5.43447 5.44724 5.49123 5.56004 5.65499 6.14390 6.33749 6.58097 7.17578 7.43651 8.05202 8.66132 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.004705 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.868561 B = 5950.263434 C = 6075.791353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 N -0.451 5.451 4 C -0.342 4.342 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.887 5.887 8 Si 0.982 3.018 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.260 1.260 12 C 0.441 3.559 13 O -0.621 6.621 14 C 0.068 3.932 15 O -0.374 6.374 16 C 0.078 3.922 17 H 0.075 0.925 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.080 4.080 23 H 0.109 0.891 24 C -0.145 4.145 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.275 0.725 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -3.660 15.206 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.032 4.032 3 N -0.171 5.171 4 C -0.470 4.470 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.525 5.525 8 Si 0.806 3.194 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.184 1.184 12 C 0.230 3.770 13 O -0.507 6.507 14 C -0.012 4.012 15 O -0.293 6.293 16 C 0.020 3.980 17 H 0.093 0.907 18 C -0.175 4.175 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.098 4.098 23 H 0.127 0.873 24 C -0.202 4.202 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.826 -3.085 15.070 16.449 hybrid contribution 0.318 0.175 -1.292 1.342 sum -5.508 -2.910 13.778 15.120 Atomic orbital electron populations 1.22116 0.95095 1.02687 1.01322 1.21765 0.94288 0.83199 1.03987 1.43770 1.55961 1.13203 1.04166 1.19406 1.42079 0.94840 0.90652 0.92152 1.26064 0.93339 0.96573 1.03814 1.69984 1.32358 1.15912 1.34251 0.85064 0.78200 0.78699 0.77472 1.19800 1.20395 1.18418 1.21026 0.82049 0.87800 0.86115 1.90484 1.51635 1.21016 1.87575 1.22127 1.01239 0.92238 0.85558 1.88065 1.87962 1.39045 1.14224 1.22495 0.96628 0.96040 0.82821 0.90738 1.22030 0.95616 0.97711 1.02138 1.21421 0.98214 0.96931 0.99043 1.21484 0.97109 0.97253 0.98950 1.21512 0.95447 0.98064 1.00063 1.21260 0.94973 0.95057 0.98549 0.87257 1.21756 0.97096 1.00961 1.00370 0.93957 0.89298 0.92836 0.88906 0.91611 0.91511 0.90593 0.89504 0.88208 0.92687 0.91232 0.95206 0.89737 0.92328 0.90824 0.94926 0.91928 0.91358 0.95177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.15 71.98 0.73 -4.52 16 2 C 0.09 3.89 5.43 86.38 0.47 4.36 16 3 N -0.45 -23.85 2.56 -635.56 -1.63 -25.47 16 4 C -0.34 -20.02 8.98 84.04 0.75 -19.26 16 5 H 0.06 3.83 7.70 -2.91 -0.02 3.81 16 6 C 0.00 0.25 4.92 84.92 0.42 0.66 16 7 N -0.89 -48.00 11.33 21.66 0.25 -47.76 16 8 Si 0.98 42.82 29.61 68.60 2.03 44.85 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 C 0.44 23.34 7.67 87.66 0.67 24.01 16 13 O -0.62 -39.11 16.32 15.96 0.26 -38.85 16 14 C 0.07 2.66 4.83 71.24 0.34 3.01 16 15 O -0.37 -14.40 7.50 -129.94 -0.97 -15.38 16 16 C 0.08 2.06 2.35 30.59 0.07 2.13 16 17 H 0.07 1.68 7.79 -2.39 -0.02 1.66 16 18 C -0.14 -3.23 5.63 30.59 0.17 -3.06 16 19 C -0.12 -3.12 5.78 30.59 0.18 -2.94 16 20 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 21 C -0.11 -2.87 5.06 30.59 0.15 -2.72 16 22 C -0.08 -1.83 2.55 -10.79 -0.03 -1.86 16 23 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 24 C -0.14 -3.47 9.05 71.98 0.65 -2.82 16 25 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.05 1.68 6.60 -2.39 -0.02 1.66 16 28 H 0.09 4.43 5.34 -2.39 -0.01 4.42 16 29 H 0.07 2.50 6.66 -2.39 -0.02 2.48 16 30 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.08 2.72 7.14 -2.38 -0.02 2.70 16 32 H 0.09 2.88 6.48 -2.39 -0.02 2.86 16 33 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.05 1.37 7.87 -2.39 -0.02 1.35 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 1.04 7.68 -2.38 -0.02 1.02 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.03 1.11 7.68 -2.38 -0.02 1.09 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.03 0.95 7.68 -2.39 -0.02 0.93 16 Total: -1.00 -73.20 335.31 5.67 -67.53 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.96 Total: 20.36 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.77 Total: -5.28 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.38 Total: -73.23 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.71 Total: -54.22 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.20 5.67 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112802298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.107 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds