Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.46738 * 2 1 4 4 C 1.34232 * 116.99680 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00149 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00147 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.53125 * 109.52222 * 174.99986 * 7 6 4 9 9 C 1.53033 * 109.28287 * 177.61979 * 8 7 6 10 10 N 1.46851 * 109.52231 * 300.82460 * 9 8 7 11 11 C 1.46898 * 110.99682 * 185.83477 * 10 9 8 12 12 C 1.53006 * 109.47006 * 170.00115 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47510 * 119.99847 * 17 15 13 20 20 H 1.48506 * 109.47246 * 239.99882 * 17 15 13 21 21 C 1.46846 * 111.19864 * 61.73920 * 10 9 8 22 22 C 1.53033 * 109.52460 * 298.25500 * 21 10 9 23 23 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47922 * 300.00364 * 1 2 3 25 25 H 1.09000 * 109.46916 * 60.00298 * 1 2 3 26 26 H 1.08991 * 109.47333 * 239.99628 * 2 1 3 27 27 H 1.09000 * 109.46916 * 119.99701 * 2 1 3 28 28 H 1.09004 * 109.47033 * 60.00002 * 6 4 3 29 29 H 1.09000 * 109.47043 * 299.99948 * 6 4 3 30 30 H 1.08994 * 109.52566 * 54.87274 * 7 6 4 31 31 H 1.09005 * 109.50073 * 57.67955 * 8 7 6 32 32 H 1.08991 * 109.50379 * 297.56469 * 8 7 6 33 33 H 1.08989 * 109.46624 * 180.80484 * 9 8 7 34 34 H 1.09002 * 109.45127 * 60.82884 * 9 8 7 35 35 H 1.09001 * 109.47392 * 50.00413 * 11 10 9 36 36 H 1.09001 * 109.47520 * 290.00136 * 11 10 9 37 37 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 38 38 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 39 39 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46555 * 58.27646 * 21 10 9 41 41 H 1.09001 * 109.46296 * 178.24247 * 21 10 9 42 42 H 1.08997 * 109.50475 * 299.23909 * 22 21 10 43 43 H 1.09002 * 109.50799 * 179.12007 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4485 2.8573 0.0001 8 6 6.0348 4.2662 -0.1262 9 6 7.5618 4.1855 -0.0658 10 7 7.9711 3.5778 1.2069 11 6 9.4318 3.6101 1.3599 12 6 9.8042 3.2030 2.7870 13 6 11.3026 3.2367 2.9442 14 1 11.9269 3.5197 2.1095 15 6 11.8765 2.9053 4.1532 16 7 11.1164 2.5602 5.1694 17 14 13.7339 2.9463 4.3478 18 1 14.3569 3.3630 3.0658 19 1 14.0988 3.9140 5.4135 20 1 14.2228 1.5940 4.7187 21 6 7.4593 2.2069 1.3297 22 6 5.9292 2.2287 1.3110 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.5843 3.4702 0.8895 29 1 3.5851 3.4691 -0.8905 30 1 5.7814 2.2476 -0.8398 31 1 5.6706 4.8867 0.6926 32 1 5.7309 4.7029 -1.0774 33 1 7.9819 5.1883 -0.1411 34 1 7.9261 3.5760 -0.8929 35 1 9.7956 4.6185 1.1631 36 1 9.8866 2.9155 0.6536 37 1 9.3495 3.8977 3.4933 38 1 9.4404 2.1946 2.9838 39 1 11.5202 2.3267 6.0199 40 1 7.8242 1.6069 0.4961 41 1 7.8048 1.7729 2.2680 42 1 5.5633 2.8171 2.1525 43 1 5.5497 1.2097 1.3865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120088661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -110.214061 kcal Electronic energy + Delta-G solvation = -20732.935465 eV Core-core repulsion = 17584.141066 eV Total energy + Delta-G solvation = -3148.794399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73435 -38.74739 -36.84086 -34.75855 -32.86446 -32.05086 -30.61411 -30.10598 -28.00211 -24.72392 -23.55622 -22.94184 -22.34751 -20.80815 -20.00504 -19.43694 -17.76276 -16.85580 -16.45160 -16.34775 -15.18221 -14.84003 -14.59817 -14.41530 -14.14281 -13.72696 -13.62330 -13.25707 -12.99226 -12.66477 -12.51168 -12.33555 -12.08732 -11.86203 -11.80037 -11.63242 -11.12639 -10.95696 -10.90954 -10.77741 -10.67023 -10.63673 -10.47562 -10.18388 -9.96305 -9.71233 -9.26073 -9.04996 -8.29101 -7.62068 -5.95795 -3.97864 2.10493 2.49480 3.33614 3.40819 3.44950 4.42589 4.47710 4.58856 4.61797 4.67308 4.72202 4.81253 4.96570 5.05396 5.34163 5.36271 5.40011 5.41053 5.44910 5.52924 5.63502 5.64415 5.73241 5.86570 5.99777 6.02951 6.14043 6.17198 6.28313 6.33517 6.45552 6.51829 6.63365 6.67062 7.03865 7.59407 7.64925 7.68158 7.87012 7.96703 8.14024 8.48508 9.09777 9.65506 11.15664 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.003107 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.295432 B = 9010.750005 C = 9575.699915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.460 3.540 5 O -0.500 6.500 6 C -0.108 4.108 7 C -0.077 4.077 8 C -0.108 4.108 9 C 0.055 3.945 10 N -0.539 5.539 11 C 0.063 3.937 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.058 3.942 22 C -0.116 4.116 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.259 0.741 40 H 0.024 0.976 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.572 -0.776 -12.227 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.387 6.387 6 C -0.145 4.145 7 C -0.096 4.096 8 C -0.146 4.146 9 C -0.073 4.073 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.010 4.010 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.070 4.070 22 C -0.154 4.154 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.564 -0.874 -11.672 23.661 hybrid contribution 1.412 -0.702 -0.463 1.644 sum -19.151 -1.576 -12.135 22.727 Atomic orbital electron populations 1.21803 0.92720 1.02933 1.03472 1.23002 0.95278 0.80410 1.02655 1.86511 1.25030 1.32293 1.84263 1.23930 0.80270 0.93240 0.72302 1.90671 1.60091 1.43296 1.44653 1.21544 0.96829 0.90464 1.05678 1.21095 0.90819 0.97638 1.00059 1.21621 0.95696 0.95672 1.01633 1.22014 0.94715 0.99501 0.91077 1.62044 1.13699 1.18961 1.31684 1.22310 0.83659 0.99691 1.00690 1.19105 0.95522 0.96856 0.89517 1.21246 0.92164 1.45650 0.96855 0.92786 1.24997 0.97990 0.95405 0.95996 1.69982 1.34771 1.46323 1.02180 0.86549 0.85877 0.77580 0.78050 1.19803 1.21003 1.21072 1.22053 0.93929 0.89411 1.01648 1.21785 0.96045 1.01372 0.96184 0.90298 0.91442 0.91561 0.91336 0.91156 0.87484 0.87893 0.90727 0.90814 0.91930 0.91030 0.95731 0.92188 0.96386 0.95737 0.96467 0.93093 0.95741 0.89588 0.91486 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.82 10.22 -39.26 -0.40 -4.22 16 4 C 0.46 5.38 7.69 36.01 0.28 5.66 16 5 O -0.50 -7.36 13.74 -18.75 -0.26 -7.62 16 6 C -0.11 -1.03 5.29 -27.88 -0.15 -1.18 16 7 C -0.08 -0.95 1.90 -90.49 -0.17 -1.12 16 8 C -0.11 -1.28 5.38 -26.65 -0.14 -1.42 16 9 C 0.06 0.83 5.46 -3.83 -0.02 0.81 16 10 N -0.54 -10.14 4.66 -234.67 -1.09 -11.23 16 11 C 0.06 1.38 4.90 -3.82 -0.02 1.37 16 12 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.06 1.05 5.29 -3.84 -0.02 1.03 16 22 C -0.12 -1.74 5.10 -26.65 -0.14 -1.88 16 23 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.03 8.01 -51.94 -0.42 0.61 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 1.28 7.99 -51.93 -0.41 0.87 16 36 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 1.77 6.21 -51.93 -0.32 1.45 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.19 6.05 -51.93 -0.31 0.88 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -32.43 342.36 -8.87 -41.30 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -7.67 Total: -4.08 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.32 Total: -9.69 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.36 Total: -37.83 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.66 Total: -11.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.43 -8.87 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120088661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.914 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds