Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.46738 * 2 1 4 4 C 1.34232 * 116.99680 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00149 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00147 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.53125 * 109.52222 * 174.99986 * 7 6 4 9 9 C 1.53033 * 109.28287 * 177.61979 * 8 7 6 10 10 N 1.46851 * 109.52231 * 300.82460 * 9 8 7 11 11 C 1.46898 * 110.99682 * 185.83477 * 10 9 8 12 12 C 1.53006 * 109.47006 * 170.00115 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47309 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47510 * 119.99847 * 17 15 13 20 20 H 1.48506 * 109.47246 * 239.99882 * 17 15 13 21 21 C 1.46846 * 111.19864 * 61.73920 * 10 9 8 22 22 C 1.53033 * 109.52460 * 298.25500 * 21 10 9 23 23 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47922 * 300.00364 * 1 2 3 25 25 H 1.09000 * 109.46916 * 60.00298 * 1 2 3 26 26 H 1.08991 * 109.47333 * 239.99628 * 2 1 3 27 27 H 1.09000 * 109.46916 * 119.99701 * 2 1 3 28 28 H 1.09004 * 109.47033 * 60.00002 * 6 4 3 29 29 H 1.09000 * 109.47043 * 299.99948 * 6 4 3 30 30 H 1.08994 * 109.52566 * 54.87274 * 7 6 4 31 31 H 1.09005 * 109.50073 * 57.67955 * 8 7 6 32 32 H 1.08991 * 109.50379 * 297.56469 * 8 7 6 33 33 H 1.08989 * 109.46624 * 180.80484 * 9 8 7 34 34 H 1.09002 * 109.45127 * 60.82884 * 9 8 7 35 35 H 1.09001 * 109.47392 * 50.00413 * 11 10 9 36 36 H 1.09001 * 109.47520 * 290.00136 * 11 10 9 37 37 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 38 38 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 39 39 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46555 * 58.27646 * 21 10 9 41 41 H 1.09001 * 109.46296 * 178.24247 * 21 10 9 42 42 H 1.08997 * 109.50475 * 299.23909 * 22 21 10 43 43 H 1.09002 * 109.50799 * 179.12007 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4485 2.8573 0.0001 8 6 6.0348 4.2662 -0.1262 9 6 7.5618 4.1855 -0.0658 10 7 7.9711 3.5778 1.2069 11 6 9.4318 3.6101 1.3599 12 6 9.8042 3.2030 2.7870 13 6 11.3026 3.2367 2.9442 14 1 11.9269 3.5197 2.1095 15 6 11.8765 2.9053 4.1532 16 7 11.1164 2.5602 5.1694 17 14 13.7339 2.9463 4.3478 18 1 14.3569 3.3630 3.0658 19 1 14.0988 3.9140 5.4135 20 1 14.2228 1.5940 4.7187 21 6 7.4593 2.2069 1.3297 22 6 5.9292 2.2287 1.3110 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.5843 3.4702 0.8895 29 1 3.5851 3.4691 -0.8905 30 1 5.7814 2.2476 -0.8398 31 1 5.6706 4.8867 0.6926 32 1 5.7309 4.7029 -1.0774 33 1 7.9819 5.1883 -0.1411 34 1 7.9261 3.5760 -0.8929 35 1 9.7956 4.6185 1.1631 36 1 9.8866 2.9155 0.6536 37 1 9.3495 3.8977 3.4933 38 1 9.4404 2.1946 2.9838 39 1 11.5202 2.3267 6.0199 40 1 7.8242 1.6069 0.4961 41 1 7.8048 1.7729 2.2680 42 1 5.5633 2.8171 2.1525 43 1 5.5497 1.2097 1.3865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120088661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -130.074402 kcal Electronic energy + Delta-G solvation = -20733.796674 eV Core-core repulsion = 17584.141066 eV Total energy + Delta-G solvation = -3149.655608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64508 -40.00216 -37.79960 -36.22361 -34.81257 -32.76100 -31.96870 -31.59980 -29.41868 -26.45149 -24.67642 -24.22057 -23.43694 -22.02157 -21.50898 -20.60839 -18.70345 -18.53857 -17.68727 -17.24096 -16.61241 -16.55746 -16.09748 -15.62213 -15.22816 -15.05697 -14.63354 -14.54387 -14.24534 -13.98127 -13.70337 -13.50947 -13.26993 -13.02144 -12.94933 -12.76883 -12.67076 -12.49468 -12.40898 -12.12301 -11.93238 -11.74876 -11.71264 -11.54882 -11.45208 -11.27782 -11.01900 -10.97300 -10.54331 -9.16450 -8.20906 -6.32538 1.22487 1.38996 1.39783 1.53184 1.73437 2.39476 3.10154 3.12200 3.62509 3.77809 3.81570 4.00515 4.03827 4.10122 4.26355 4.33401 4.35321 4.43482 4.48983 4.59556 4.64546 4.69635 4.74886 4.81212 4.87095 4.92937 4.97901 5.00027 5.06535 5.14840 5.15896 5.22232 5.24858 5.44307 5.49279 5.56563 5.66922 5.78593 6.10786 6.33839 6.38173 6.78393 6.84899 7.36530 8.91606 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034504 B = 0.003107 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.295432 B = 9010.750005 C = 9575.699915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.539 6.539 6 C -0.100 4.100 7 C -0.072 4.072 8 C -0.099 4.099 9 C 0.049 3.951 10 N -0.547 5.547 11 C 0.078 3.922 12 C 0.036 3.964 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.060 3.940 22 C -0.108 4.108 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.013 0.987 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.414 0.551 -13.801 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.429 6.429 6 C -0.137 4.137 7 C -0.090 4.090 8 C -0.137 4.137 9 C -0.078 4.078 10 N -0.272 5.272 11 C -0.049 4.049 12 C -0.001 4.001 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.204 1.204 21 C -0.068 4.068 22 C -0.146 4.146 23 H 0.115 0.885 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.012 0.988 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.438 0.468 -13.266 25.215 hybrid contribution 1.620 -1.163 0.041 1.994 sum -19.818 -0.694 -13.226 23.836 Atomic orbital electron populations 1.21812 0.90372 1.04246 1.03807 1.23230 0.97129 0.79605 1.02206 1.86514 1.24358 1.33294 1.83803 1.24409 0.80408 0.93716 0.71135 1.90666 1.60931 1.44693 1.46604 1.21555 0.94352 0.89526 1.08244 1.20997 0.93002 0.97562 0.97489 1.21607 0.92776 0.95338 1.03951 1.22214 0.97412 0.99432 0.88773 1.61992 1.11407 1.19191 1.34656 1.21967 0.86119 0.99634 0.97199 1.18925 0.94697 0.94509 0.91988 1.21664 0.93295 1.45913 0.97398 0.92173 1.26002 1.03692 0.94651 0.95521 1.70122 1.37285 1.46989 1.02842 0.85349 0.78966 0.77866 0.78537 1.18517 1.20118 1.20429 1.21973 0.96371 0.89078 0.99358 1.21691 0.93232 1.01300 0.98344 0.88531 0.91303 0.90950 0.91515 0.92015 0.85705 0.84290 0.91668 0.90313 0.88058 0.90024 0.95619 0.91386 0.96828 0.98834 0.99210 0.92748 0.96390 0.93359 0.91527 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.36 -7.07 10.22 -51.44 -0.53 -7.60 16 4 C 0.46 10.12 7.69 71.24 0.55 10.67 16 5 O -0.54 -15.90 13.74 21.96 0.30 -15.59 16 6 C -0.10 -1.60 5.29 29.85 0.16 -1.44 16 7 C -0.07 -1.61 1.90 -10.71 -0.02 -1.63 16 8 C -0.10 -2.02 5.38 30.65 0.16 -1.85 16 9 C 0.05 1.39 5.46 86.32 0.47 1.86 16 10 N -0.55 -20.82 4.66 -896.37 -4.17 -25.00 16 11 C 0.08 3.51 4.90 86.31 0.42 3.94 16 12 C 0.04 2.03 4.90 29.85 0.15 2.18 16 13 C -0.54 -32.20 9.11 25.60 0.23 -31.97 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -58.58 13.29 21.45 0.28 -58.29 16 17 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C 0.06 2.30 5.29 86.32 0.46 2.75 16 22 C -0.11 -3.27 5.10 30.65 0.16 -3.11 16 23 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.62 7.95 -2.39 -0.02 1.61 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 2.15 8.01 -2.39 -0.02 2.13 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 2.91 7.99 -2.39 -0.02 2.89 16 36 H 0.01 0.61 8.12 -2.39 -0.02 0.59 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 38 H -0.01 -0.63 6.43 -2.39 -0.02 -0.65 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 2.16 6.21 -2.39 -0.01 2.14 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.14 6.05 -2.39 -0.01 2.12 16 Total: -1.00 -72.90 342.36 3.25 -69.65 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.95 Total: 7.01 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.39 Total: -17.62 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -3.89 Total: -83.29 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.22 Total: -23.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.90 3.25 -69.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120088661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.427 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds