Wall clock time and date at job start Mon Mar 30 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00364 * 2 1 4 4 C 1.53002 * 109.47224 * 210.00319 * 3 2 1 5 5 C 1.53001 * 109.47200 * 299.99730 * 4 3 2 6 6 C 1.52995 * 109.47330 * 300.00450 * 5 4 3 7 7 C 1.53001 * 109.46981 * 179.97438 * 6 5 4 8 8 C 1.50709 * 109.46811 * 174.99816 * 7 6 5 9 9 O 1.21279 * 120.00080 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99692 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00015 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46733 * 325.00143 * 11 10 8 13 13 C 1.53000 * 109.47145 * 84.99707 * 11 10 8 14 14 C 1.50694 * 109.47115 * 204.99781 * 11 10 8 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53002 * 109.47346 * 59.99640 * 6 5 4 23 23 C 1.52997 * 109.47313 * 300.00110 * 22 6 5 24 24 H 1.09003 * 109.46513 * 300.00125 * 1 2 3 25 25 H 1.09006 * 109.47246 * 59.99278 * 1 2 3 26 26 H 1.08998 * 109.47625 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47613 * 330.00477 * 3 2 1 28 28 H 1.09005 * 109.47022 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47449 * 60.00465 * 4 3 2 30 30 H 1.08996 * 109.47183 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.46759 * 60.00296 * 5 4 3 32 32 H 1.08996 * 109.47287 * 299.99712 * 6 5 4 33 33 H 1.09003 * 109.47185 * 55.00453 * 7 6 5 34 34 H 1.08992 * 109.47176 * 294.99920 * 7 6 5 35 35 H 0.97005 * 120.00104 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.47356 * 300.00099 * 13 11 10 37 37 H 1.09000 * 109.47156 * 59.99824 * 13 11 10 38 38 H 1.08997 * 109.47359 * 180.02562 * 13 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47022 * 59.99982 * 22 6 5 41 41 H 1.08994 * 109.47449 * 179.97438 * 22 6 5 42 42 H 1.09001 * 109.47304 * 300.00280 * 23 22 6 43 43 H 1.08995 * 109.47583 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 4.2928 0.2891 -0.0001 6 6 4.5002 0.7549 1.4424 7 6 5.4336 -0.2195 2.1637 8 6 5.7361 0.3035 3.5443 9 8 5.2524 1.3521 3.9150 10 7 6.5441 -0.3940 4.3671 11 6 6.8377 0.1141 5.7094 12 1 6.8920 1.2024 5.6820 13 6 5.7292 -0.3171 6.6717 14 6 8.1564 -0.4431 6.1801 15 1 8.7194 -1.1094 5.5433 16 6 8.6439 -0.1030 7.4242 17 7 7.9582 0.7080 8.1999 18 14 10.2781 -0.7943 8.0079 19 1 10.5759 -0.2791 9.3686 20 1 10.2037 -2.2769 8.0448 21 1 11.3544 -0.3758 7.0743 22 6 3.1516 0.7971 2.1637 23 6 2.2178 1.7712 1.4426 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.3451 1.9994 -0.5137 28 1 3.8025 2.2588 -0.7209 29 1 3.2111 0.9314 -1.7490 30 1 5.2534 0.2587 -0.5142 31 1 3.8494 -0.7067 -0.0002 32 1 4.9436 1.7506 1.4425 33 1 6.3619 -0.3175 1.6009 34 1 4.9515 -1.1939 2.2418 35 1 6.9307 -1.2329 4.0708 36 1 4.7753 0.0859 6.3313 37 1 5.6748 -1.4054 6.6991 38 1 5.9474 0.0613 7.6704 39 1 8.3009 0.9469 9.0753 40 1 2.7082 -0.1986 2.1636 41 1 3.2994 1.1285 3.1914 42 1 2.6612 2.7670 1.4425 43 1 1.2569 1.8010 1.9561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121601809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:12 Heat of formation + Delta-G solvation = -115.711310 kcal Electronic energy + Delta-G solvation = -21288.277332 eV Core-core repulsion = 18139.244554 eV Total energy + Delta-G solvation = -3149.032777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.74036 -38.57384 -36.21941 -34.65399 -32.35640 -31.75876 -30.66668 -29.03643 -26.95159 -26.08353 -25.20456 -22.62717 -21.94407 -20.55585 -19.50012 -19.23977 -16.98311 -16.33868 -16.05113 -15.49252 -15.42588 -15.19288 -14.56222 -14.31161 -13.92905 -13.71642 -13.41881 -12.87455 -12.65512 -12.35166 -12.27152 -12.02908 -11.94738 -11.57646 -11.31731 -11.19046 -11.05020 -10.99425 -10.90417 -10.63335 -10.41794 -10.28469 -10.21615 -10.18197 -9.97745 -9.47246 -9.01378 -8.76698 -8.49238 -7.81037 -6.09185 -4.18317 3.27268 3.32308 3.33654 3.53693 3.69912 4.19292 4.43100 4.71466 4.75440 4.93252 5.11772 5.18240 5.20759 5.22782 5.30385 5.32049 5.49398 5.51654 5.60414 5.64628 5.75310 5.80725 5.90999 5.94542 6.04687 6.13179 6.26812 6.30872 6.41011 6.74088 6.75703 6.87827 7.02343 7.13964 7.20574 7.54280 7.62895 7.74656 7.96904 8.19702 8.75887 8.83776 9.24499 9.49891 10.96735 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043358 B = 0.003494 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.633150 B = 8012.429441 C = 8253.378282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.088 3.912 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.067 4.067 7 C -0.139 4.139 8 C 0.500 3.500 9 O -0.554 6.554 10 N -0.713 5.713 11 C 0.264 3.736 12 H 0.047 0.953 13 C -0.146 4.146 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.901 3.099 19 H -0.286 1.286 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.113 4.113 23 C -0.138 4.138 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.387 0.613 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.089 0.911 39 H 0.264 0.736 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 -1.434 -16.693 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.179 4.179 8 C 0.285 3.715 9 O -0.434 6.434 10 N -0.361 5.361 11 C 0.162 3.838 12 H 0.065 0.935 13 C -0.205 4.205 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.729 3.271 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.150 4.150 23 C -0.175 4.175 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.219 0.781 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.264 -0.751 -16.200 19.746 hybrid contribution 0.838 -0.590 0.283 1.063 sum -10.426 -1.341 -15.917 19.075 Atomic orbital electron populations 1.22744 0.81822 1.02414 0.99611 1.87928 1.18880 1.27922 1.95026 1.22171 0.94554 0.84266 0.95955 1.21604 0.94172 1.00519 0.98766 1.21517 0.98574 0.99609 0.95126 1.20848 0.95434 0.98993 0.93301 1.21751 1.00921 1.00547 0.94670 1.20516 0.79314 0.84942 0.86689 1.90598 1.52130 1.23636 1.77035 1.46557 1.47545 1.24685 1.17270 1.18690 0.93146 0.95934 0.75991 0.93495 1.22067 0.96372 0.98447 1.03580 1.21214 1.04405 1.29940 1.01676 0.92184 1.24896 0.97617 0.94878 0.96359 1.69899 1.38010 1.34139 1.10135 0.86514 0.83513 0.79237 0.77855 1.21146 1.20171 1.20196 1.21576 0.93642 0.99124 1.00666 1.21988 1.00099 1.00019 0.95428 0.94196 0.94502 0.89939 0.92798 0.90791 0.91733 0.92262 0.91212 0.90751 0.89721 0.89681 0.78056 0.96706 0.95586 0.89279 0.92570 0.92247 0.89679 0.91129 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.38 9.00 -35.23 -0.32 -4.70 16 3 C 0.09 0.94 2.92 -26.73 -0.08 0.87 16 4 C -0.11 -1.15 5.66 -26.73 -0.15 -1.30 16 5 C -0.11 -1.25 5.06 -26.73 -0.14 -1.39 16 6 C -0.07 -0.93 1.84 -90.62 -0.17 -1.09 16 7 C -0.14 -2.02 5.17 -27.88 -0.14 -2.17 16 8 C 0.50 9.98 7.51 -10.98 -0.08 9.90 16 9 O -0.55 -13.03 13.63 5.56 0.08 -12.96 16 10 N -0.71 -15.12 5.07 -54.93 -0.28 -15.40 16 11 C 0.26 6.86 2.56 -69.09 -0.18 6.68 16 12 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 13 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 14 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -25.27 11.32 55.43 0.63 -24.65 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.11 -1.65 4.80 -26.73 -0.13 -1.78 16 23 C -0.14 -1.68 5.63 -26.73 -0.15 -1.84 16 24 H 0.04 0.33 7.87 -51.93 -0.41 -0.07 16 25 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 32 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.39 7.14 8.54 -40.82 -0.35 6.79 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 41 H 0.08 1.53 5.95 -51.93 -0.31 1.22 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -30.71 337.52 -7.56 -38.28 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.56 Total: 5.62 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.17 Total: -7.13 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.35 Total: -40.04 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.24 Total: -17.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.71 -7.56 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121601809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.435 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds