Wall clock time and date at job start Mon Mar 30 2020 00:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00043 * 2 1 4 4 C 1.53003 * 109.47026 * 209.99777 * 3 2 1 5 5 C 1.52993 * 109.47326 * 300.00050 * 4 3 2 6 6 C 1.53003 * 109.46845 * 300.00023 * 5 4 3 7 7 C 1.53002 * 109.46861 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47235 * 175.00037 * 7 6 5 9 9 O 1.21291 * 119.99680 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00409 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00120 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47495 * 34.99656 * 11 10 8 13 13 C 1.53002 * 109.47130 * 274.99902 * 11 10 8 14 14 C 1.50697 * 109.47265 * 154.99988 * 11 10 8 15 15 H 1.07999 * 119.99662 * 5.37284 * 14 11 10 16 16 C 1.37875 * 120.00120 * 185.37269 * 14 11 10 17 17 N 1.31515 * 119.99748 * 184.89036 * 16 14 11 18 18 Si 1.86794 * 120.00196 * 5.16703 * 16 14 11 19 19 H 1.48500 * 109.47373 * 269.72603 * 18 16 14 20 20 H 1.48505 * 109.47126 * 29.72474 * 18 16 14 21 21 H 1.48499 * 109.47207 * 149.72425 * 18 16 14 22 22 C 1.53003 * 109.47320 * 60.00252 * 6 5 4 23 23 C 1.52993 * 109.47153 * 89.99788 * 3 2 1 24 24 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47252 * 300.00136 * 1 2 3 26 26 H 1.09007 * 109.46668 * 60.00467 * 1 2 3 27 27 H 1.09005 * 109.47273 * 329.99527 * 3 2 1 28 28 H 1.09002 * 109.46594 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46724 * 60.00175 * 4 3 2 30 30 H 1.09001 * 109.47497 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.46996 * 59.99572 * 5 4 3 32 32 H 1.09003 * 109.47374 * 299.99711 * 6 5 4 33 33 H 1.09002 * 109.47493 * 55.00285 * 7 6 5 34 34 H 1.09003 * 109.47202 * 294.99746 * 7 6 5 35 35 H 0.96997 * 119.99372 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.46920 * 294.97726 * 13 11 10 37 37 H 1.09000 * 109.47026 * 54.97693 * 13 11 10 38 38 H 1.09000 * 109.47127 * 174.97700 * 13 11 10 39 39 H 0.97000 * 120.00553 * 355.27176 * 17 16 14 40 40 H 1.08997 * 109.46940 * 59.99560 * 22 6 5 41 41 H 1.09000 * 109.46947 * 180.02562 * 22 6 5 42 42 H 1.09003 * 109.47278 * 179.97438 * 23 3 2 43 43 H 1.09005 * 109.47282 * 299.99706 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2632 -0.7212 5 6 4.2927 0.2892 0.0000 6 6 4.5001 0.7552 1.4425 7 6 5.4334 -0.2192 2.1640 8 6 5.7358 0.3039 3.5446 9 8 5.2528 1.3530 3.9148 10 7 6.5438 -0.3936 4.3675 11 6 6.8373 0.1147 5.7097 12 1 5.9579 0.6218 6.1066 13 6 8.0053 1.1004 5.6378 14 6 7.2048 -1.0344 6.6128 15 1 7.3031 -2.0303 6.2066 16 6 7.4155 -0.8144 7.9575 17 7 7.8295 -1.7969 8.7275 18 14 7.1056 0.8770 8.6870 19 1 8.3523 1.6811 8.6198 20 1 6.0344 1.5594 7.9173 21 1 6.6837 0.7354 10.1037 22 6 3.1514 0.7974 2.1638 23 6 2.2176 1.7713 1.4424 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.3450 1.9994 -0.5139 28 1 3.8021 2.2591 -0.7216 29 1 3.2111 0.9313 -1.7489 30 1 5.2537 0.2594 -0.5135 31 1 3.8493 -0.7065 0.0001 32 1 4.9435 1.7510 1.4425 33 1 6.3618 -0.3173 1.6012 34 1 4.9512 -1.1937 2.2422 35 1 6.9310 -1.2320 4.0709 36 1 8.9069 0.5732 5.3259 37 1 7.7750 1.8845 4.9165 38 1 8.1660 1.5456 6.6196 39 1 7.9209 -2.6919 8.3649 40 1 2.7081 -0.1984 2.1638 41 1 3.2992 1.1298 3.1913 42 1 2.6614 2.7669 1.4425 43 1 1.2568 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121601971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:14 Heat of formation + Delta-G solvation = -115.531442 kcal Electronic energy + Delta-G solvation = -21368.572128 eV Core-core repulsion = 18219.547150 eV Total energy + Delta-G solvation = -3149.024977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83773 -38.72493 -36.31323 -34.84722 -32.43725 -31.87902 -30.73145 -29.73538 -27.07709 -26.21710 -24.76592 -22.68886 -21.96380 -20.46051 -19.57247 -19.43744 -17.69045 -16.39299 -16.35165 -15.80446 -15.47279 -15.28561 -14.76980 -14.14965 -13.90314 -13.74333 -13.38395 -12.90549 -12.78991 -12.69992 -12.37762 -12.23594 -12.10616 -11.86139 -11.58276 -11.50566 -11.30507 -11.18895 -11.02032 -10.52782 -10.48254 -10.28485 -10.05032 -10.04073 -9.75681 -9.53190 -8.97199 -8.81199 -8.53868 -8.08603 -6.53258 -4.21372 3.34345 3.37929 3.46747 3.60812 3.65820 4.07462 4.43047 4.65656 4.69041 4.86403 5.06863 5.12340 5.14870 5.22139 5.23837 5.25295 5.43725 5.46631 5.53475 5.58051 5.68142 5.69191 5.82381 5.86275 5.97738 6.05815 6.17988 6.24789 6.33637 6.39228 6.47918 6.64991 6.66584 6.68755 6.93756 7.09901 7.31323 7.45254 7.69039 8.24848 8.55104 8.73426 9.07043 9.49535 10.87109 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.003840 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.699790 B = 7290.272893 C = 7422.105307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.088 3.912 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.067 4.067 7 C -0.138 4.138 8 C 0.501 3.499 9 O -0.555 6.555 10 N -0.706 5.706 11 C 0.234 3.766 12 H 0.047 0.953 13 C -0.157 4.157 14 C -0.608 4.608 15 H 0.061 0.939 16 C 0.034 3.966 17 N -0.907 5.907 18 Si 1.052 2.948 19 H -0.282 1.282 20 H -0.274 1.274 21 H -0.288 1.288 22 C -0.114 4.114 23 C -0.137 4.137 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.049 0.951 37 H 0.032 0.968 38 H 0.048 0.952 39 H 0.268 0.732 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.438 4.876 -19.379 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.030 3.970 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.178 4.178 8 C 0.287 3.713 9 O -0.435 6.435 10 N -0.353 5.353 11 C 0.131 3.869 12 H 0.065 0.935 13 C -0.216 4.216 14 C -0.646 4.646 15 H 0.079 0.921 16 C -0.171 4.171 17 N -0.541 5.541 18 Si 0.881 3.119 19 H -0.209 1.209 20 H -0.200 1.200 21 H -0.215 1.215 22 C -0.151 4.151 23 C -0.175 4.175 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.224 0.776 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.548 6.319 -17.677 21.533 hybrid contribution -0.037 -1.217 -1.531 1.957 sum -10.584 5.102 -19.208 22.517 Atomic orbital electron populations 1.22749 0.81759 1.02472 0.99619 1.87932 1.18935 1.27857 1.95024 1.22167 0.94566 0.84335 0.95909 1.21600 0.94170 1.00453 0.98815 1.21515 0.98604 0.99701 0.95008 1.20857 0.95437 0.98866 0.93410 1.21746 1.01046 1.00783 0.94274 1.20599 0.78937 0.84891 0.86894 1.90597 1.52477 1.23604 1.76816 1.46302 1.47901 1.24696 1.16435 1.19165 0.94057 0.94365 0.79345 0.93507 1.22388 1.00490 0.98848 0.99862 1.22188 1.53363 0.94432 0.94645 0.92063 1.25709 0.92667 1.05284 0.93463 1.70830 1.41979 1.01999 1.39276 0.83903 0.77379 0.74646 0.75969 1.20857 1.20007 1.21465 1.21589 0.93650 0.99284 1.00594 1.21986 1.00117 0.99933 0.95478 0.89896 0.94179 0.94478 0.92757 0.90816 0.91683 0.92257 0.91131 0.90769 0.89625 0.89440 0.77559 0.93229 0.94848 0.93286 0.92201 0.92116 0.89731 0.91166 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.29 9.00 -35.23 -0.32 -4.61 16 3 C 0.09 0.91 2.92 -26.73 -0.08 0.83 16 4 C -0.11 -1.09 5.66 -26.73 -0.15 -1.25 16 5 C -0.11 -1.20 5.06 -26.73 -0.14 -1.33 16 6 C -0.07 -0.88 1.84 -90.62 -0.17 -1.05 16 7 C -0.14 -1.93 5.17 -27.88 -0.14 -2.07 16 8 C 0.50 9.52 7.51 -10.98 -0.08 9.44 16 9 O -0.56 -12.29 13.63 5.55 0.08 -12.22 16 10 N -0.71 -14.46 5.07 -54.93 -0.28 -14.74 16 11 C 0.23 5.74 2.14 -69.09 -0.15 5.59 16 12 H 0.05 1.26 6.08 -51.93 -0.32 0.94 16 13 C -0.16 -3.59 9.07 37.16 0.34 -3.25 16 14 C -0.61 -16.76 9.10 -34.44 -0.31 -17.07 16 15 H 0.06 1.76 7.95 -52.49 -0.42 1.34 16 16 C 0.03 0.98 5.43 -17.82 -0.10 0.88 16 17 N -0.91 -27.52 13.70 55.43 0.76 -26.76 16 18 Si 1.05 25.87 25.28 -169.99 -4.30 21.57 16 19 H -0.28 -6.55 6.82 56.52 0.39 -6.17 16 20 H -0.27 -6.56 6.35 56.52 0.36 -6.20 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.11 -1.61 4.80 -26.73 -0.13 -1.74 16 23 C -0.14 -1.62 5.63 -26.73 -0.15 -1.77 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 26 H 0.04 0.26 8.09 -51.92 -0.42 -0.16 16 27 H 0.05 0.48 7.79 -51.93 -0.40 0.08 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 32 H 0.07 1.06 7.95 -51.93 -0.41 0.65 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.39 7.16 8.53 -40.82 -0.35 6.81 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 1.12 4.41 -51.93 -0.23 0.89 16 39 H 0.27 8.04 8.72 -40.82 -0.36 7.68 16 40 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 41 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -31.65 331.94 -6.71 -38.36 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.49 Total: 4.84 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.16 Total: -11.43 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.48 Total: -41.50 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.24 Total: -16.83 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -4.30 Total: 21.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.65 -6.71 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121601971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.176 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds