Wall clock time and date at job start Mon Mar 30 2020 00:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00043 * 2 1 4 4 C 1.53003 * 109.47026 * 209.99777 * 3 2 1 5 5 C 1.52993 * 109.47326 * 300.00050 * 4 3 2 6 6 C 1.53003 * 109.46845 * 300.00023 * 5 4 3 7 7 C 1.53002 * 109.46861 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47235 * 175.00037 * 7 6 5 9 9 O 1.21291 * 119.99680 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00409 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00120 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47495 * 34.99656 * 11 10 8 13 13 C 1.53002 * 109.47130 * 274.99902 * 11 10 8 14 14 C 1.50697 * 109.47265 * 154.99988 * 11 10 8 15 15 H 1.07999 * 119.99662 * 5.37284 * 14 11 10 16 16 C 1.37875 * 120.00120 * 185.37269 * 14 11 10 17 17 N 1.31515 * 119.99748 * 184.89036 * 16 14 11 18 18 Si 1.86794 * 120.00196 * 5.16703 * 16 14 11 19 19 H 1.48500 * 109.47373 * 269.72603 * 18 16 14 20 20 H 1.48505 * 109.47126 * 29.72474 * 18 16 14 21 21 H 1.48499 * 109.47207 * 149.72425 * 18 16 14 22 22 C 1.53003 * 109.47320 * 60.00252 * 6 5 4 23 23 C 1.52993 * 109.47153 * 89.99788 * 3 2 1 24 24 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47252 * 300.00136 * 1 2 3 26 26 H 1.09007 * 109.46668 * 60.00467 * 1 2 3 27 27 H 1.09005 * 109.47273 * 329.99527 * 3 2 1 28 28 H 1.09002 * 109.46594 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46724 * 60.00175 * 4 3 2 30 30 H 1.09001 * 109.47497 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.46996 * 59.99572 * 5 4 3 32 32 H 1.09003 * 109.47374 * 299.99711 * 6 5 4 33 33 H 1.09002 * 109.47493 * 55.00285 * 7 6 5 34 34 H 1.09003 * 109.47202 * 294.99746 * 7 6 5 35 35 H 0.96997 * 119.99372 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.46920 * 294.97726 * 13 11 10 37 37 H 1.09000 * 109.47026 * 54.97693 * 13 11 10 38 38 H 1.09000 * 109.47127 * 174.97700 * 13 11 10 39 39 H 0.97000 * 120.00553 * 355.27176 * 17 16 14 40 40 H 1.08997 * 109.46940 * 59.99560 * 22 6 5 41 41 H 1.09000 * 109.46947 * 180.02562 * 22 6 5 42 42 H 1.09003 * 109.47278 * 179.97438 * 23 3 2 43 43 H 1.09005 * 109.47282 * 299.99706 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2632 -0.7212 5 6 4.2927 0.2892 0.0000 6 6 4.5001 0.7552 1.4425 7 6 5.4334 -0.2192 2.1640 8 6 5.7358 0.3039 3.5446 9 8 5.2528 1.3530 3.9148 10 7 6.5438 -0.3936 4.3675 11 6 6.8373 0.1147 5.7097 12 1 5.9579 0.6218 6.1066 13 6 8.0053 1.1004 5.6378 14 6 7.2048 -1.0344 6.6128 15 1 7.3031 -2.0303 6.2066 16 6 7.4155 -0.8144 7.9575 17 7 7.8295 -1.7969 8.7275 18 14 7.1056 0.8770 8.6870 19 1 8.3523 1.6811 8.6198 20 1 6.0344 1.5594 7.9173 21 1 6.6837 0.7354 10.1037 22 6 3.1514 0.7974 2.1638 23 6 2.2176 1.7713 1.4424 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.3450 1.9994 -0.5139 28 1 3.8021 2.2591 -0.7216 29 1 3.2111 0.9313 -1.7489 30 1 5.2537 0.2594 -0.5135 31 1 3.8493 -0.7065 0.0001 32 1 4.9435 1.7510 1.4425 33 1 6.3618 -0.3173 1.6012 34 1 4.9512 -1.1937 2.2422 35 1 6.9310 -1.2320 4.0709 36 1 8.9069 0.5732 5.3259 37 1 7.7750 1.8845 4.9165 38 1 8.1660 1.5456 6.6196 39 1 7.9209 -2.6919 8.3649 40 1 2.7081 -0.1984 2.1638 41 1 3.2992 1.1298 3.1913 42 1 2.6614 2.7669 1.4425 43 1 1.2568 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121601971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:13 Heat of formation + Delta-G solvation = -136.996655 kcal Electronic energy + Delta-G solvation = -21369.502929 eV Core-core repulsion = 18219.547150 eV Total energy + Delta-G solvation = -3149.955779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05143 -39.93311 -37.40298 -36.57057 -34.44976 -33.03758 -31.64941 -31.44307 -28.04537 -27.12675 -26.80375 -23.65593 -23.28815 -21.93584 -21.11973 -20.50817 -19.72290 -17.80107 -17.19281 -17.06740 -16.84441 -16.24146 -16.09402 -15.65515 -15.10388 -14.90245 -14.71345 -14.57105 -14.34810 -14.09075 -13.75546 -13.54595 -13.31094 -13.21502 -12.90976 -12.82869 -12.48025 -12.33047 -12.09899 -11.99018 -11.93958 -11.70170 -11.45335 -11.28642 -10.96960 -10.94810 -10.72462 -10.59710 -10.24808 -9.84207 -8.79976 -6.49358 1.39459 1.49808 1.67393 1.83872 2.38486 2.55007 2.95039 3.02082 3.75588 3.80886 3.89532 4.02691 4.23344 4.25121 4.43063 4.48733 4.50741 4.52809 4.60770 4.62281 4.66948 4.68496 4.74582 4.75536 4.84970 4.87056 4.95487 5.03904 5.08762 5.18361 5.21130 5.32051 5.38003 5.41654 5.54234 5.63965 5.64811 5.70052 5.98089 6.37023 6.49630 6.89910 7.26776 7.51007 8.59163 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.003840 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.699790 B = 7290.272893 C = 7422.105307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.088 3.912 4 C -0.113 4.113 5 C -0.103 4.103 6 C -0.064 4.064 7 C -0.128 4.128 8 C 0.498 3.502 9 O -0.587 6.587 10 N -0.709 5.709 11 C 0.237 3.763 12 H 0.022 0.978 13 C -0.150 4.150 14 C -0.604 4.604 15 H 0.040 0.960 16 C -0.012 4.012 17 N -0.936 5.936 18 Si 1.084 2.916 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.286 1.286 22 C -0.111 4.111 23 C -0.136 4.136 24 H 0.090 0.910 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.403 0.597 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.257 0.743 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.664 5.840 -21.738 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.031 3.969 4 C -0.150 4.150 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.168 4.168 8 C 0.286 3.714 9 O -0.469 6.469 10 N -0.358 5.358 11 C 0.132 3.868 12 H 0.040 0.960 13 C -0.209 4.209 14 C -0.643 4.643 15 H 0.058 0.942 16 C -0.211 4.211 17 N -0.572 5.572 18 Si 0.907 3.093 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.212 1.212 22 C -0.149 4.149 23 C -0.174 4.174 24 H 0.109 0.891 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.237 0.763 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.770 7.265 -20.075 23.911 hybrid contribution -0.038 -1.579 -0.831 1.785 sum -10.808 5.686 -20.906 24.211 Atomic orbital electron populations 1.22902 0.80565 1.03326 1.00345 1.87904 1.20390 1.28425 1.95063 1.22204 0.95522 0.84479 0.94698 1.21643 0.93410 1.00733 0.99260 1.21449 0.99878 0.99565 0.93197 1.20846 0.94292 0.98191 0.94924 1.21786 1.02797 1.01185 0.91029 1.21475 0.77473 0.84181 0.88288 1.90589 1.53296 1.25198 1.77796 1.46196 1.48779 1.25506 1.15325 1.18848 0.93681 0.93359 0.80889 0.95986 1.22264 0.99780 0.98649 1.00184 1.22377 1.52057 0.94585 0.95250 0.94161 1.26889 0.92216 1.07609 0.94411 1.70930 1.44426 1.01995 1.39816 0.83492 0.78549 0.71764 0.75483 1.18191 1.19387 1.21248 1.21487 0.95117 0.99305 0.98974 1.21974 0.99380 0.99343 0.96673 0.89108 0.94342 0.92817 0.90859 0.89860 0.90186 0.90449 0.91683 0.91839 0.86640 0.88124 0.76295 0.92516 0.93669 0.93466 0.93360 0.92874 0.93557 0.91061 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.60 16 2 O -0.40 -8.25 9.00 -148.98 -1.34 -9.59 16 3 C 0.09 1.63 2.92 30.59 0.09 1.71 16 4 C -0.11 -1.85 5.66 30.59 0.17 -1.67 16 5 C -0.10 -1.93 5.06 30.59 0.15 -1.78 16 6 C -0.06 -1.57 1.84 -10.79 -0.02 -1.59 16 7 C -0.13 -3.32 5.17 29.85 0.15 -3.17 16 8 C 0.50 18.53 7.51 87.66 0.66 19.19 16 9 O -0.59 -26.04 13.63 -3.06 -0.04 -26.08 16 10 N -0.71 -28.62 5.07 -446.09 -2.26 -30.88 16 11 C 0.24 11.55 2.14 44.25 0.09 11.65 16 12 H 0.02 1.20 6.08 -2.39 -0.01 1.18 16 13 C -0.15 -6.65 9.07 71.98 0.65 -5.99 16 14 C -0.60 -33.62 9.10 25.60 0.23 -33.39 16 15 H 0.04 2.36 7.95 -2.91 -0.02 2.33 16 16 C -0.01 -0.68 5.43 84.65 0.46 -0.22 16 17 N -0.94 -57.65 13.70 21.45 0.29 -57.36 16 18 Si 1.08 51.81 25.28 68.60 1.73 53.55 16 19 H -0.26 -11.20 6.82 99.48 0.68 -10.52 16 20 H -0.27 -12.50 6.35 99.48 0.63 -11.87 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 22 C -0.11 -3.13 4.80 30.60 0.15 -2.98 16 23 C -0.14 -3.07 5.63 30.59 0.17 -2.90 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.58 7.87 -2.39 -0.02 0.56 16 26 H 0.05 0.63 8.09 -2.38 -0.02 0.61 16 27 H 0.07 1.08 7.79 -2.38 -0.02 1.06 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.32 7.68 -2.39 -0.02 1.30 16 32 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 33 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.40 14.37 8.53 -92.71 -0.79 13.58 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 2.08 4.41 -2.39 -0.01 2.07 16 39 H 0.26 15.86 8.72 -92.71 -0.81 15.05 16 40 H 0.05 1.53 7.68 -2.39 -0.02 1.51 16 41 H 0.05 1.65 5.95 -2.39 -0.01 1.63 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.28 7.87 -2.38 -0.02 1.26 16 Total: -1.00 -68.77 331.94 2.63 -66.14 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.05 Total: 23.76 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.20 Total: -19.54 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.97 Total: -88.23 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.38 Total: -35.67 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 1.73 Total: 53.55 kcal Total: -68.77 2.63 -66.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121601971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.855 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds