Wall clock time and date at job start Mon Mar 30 2020 01:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47196 * 2 1 4 4 C 1.37096 * 120.00117 * 276.91328 * 3 2 1 5 5 H 1.08005 * 120.00095 * 178.20908 * 4 3 2 6 6 C 1.38945 * 119.99972 * 358.21539 * 4 3 2 7 7 N 1.31408 * 120.00404 * 7.92803 * 6 4 3 8 8 Si 1.86806 * 119.99887 * 187.93536 * 6 4 3 9 9 H 1.48497 * 109.47096 * 89.99889 * 8 6 4 10 10 H 1.48498 * 109.46987 * 209.99540 * 8 6 4 11 11 H 1.48497 * 109.46945 * 329.99670 * 8 6 4 12 12 C 1.34783 * 119.99943 * 96.91518 * 3 2 1 13 13 O 1.21286 * 119.99892 * 185.41442 * 12 3 2 14 14 C 1.50699 * 119.99753 * 5.41139 * 12 3 2 15 15 C 1.52999 * 110.54021 * 298.63119 * 14 12 3 16 16 C 1.52998 * 109.47437 * 308.96325 * 15 14 12 17 17 O 1.42898 * 109.47283 * 184.55740 * 16 15 14 18 18 C 1.42898 * 113.99976 * 180.02562 * 17 16 15 19 19 C 1.54889 * 110.48502 * 176.01701 * 14 12 3 20 20 C 1.54889 * 102.74855 * 279.26469 * 19 14 12 21 21 C 1.54259 * 104.19841 * 322.05664 * 20 19 14 22 22 C 1.53879 * 106.59804 * 23.61264 * 21 20 19 23 23 H 1.08997 * 109.47164 * 62.78029 * 1 2 3 24 24 H 1.09005 * 109.47058 * 182.78007 * 1 2 3 25 25 H 1.08995 * 109.47474 * 302.77854 * 1 2 3 26 26 H 1.09004 * 109.46737 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47200 * 120.00309 * 2 1 3 28 28 H 0.96998 * 120.00739 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47311 * 68.96858 * 15 14 12 30 30 H 1.09003 * 109.46996 * 188.96256 * 15 14 12 31 31 H 1.09007 * 109.46882 * 304.56097 * 16 15 14 32 32 H 1.08999 * 109.46869 * 64.55739 * 16 15 14 33 33 H 1.08999 * 109.47106 * 59.99746 * 18 17 16 34 34 H 1.08993 * 109.47147 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47174 * 299.99961 * 18 17 16 36 36 H 1.08998 * 110.75588 * 37.58279 * 19 14 12 37 37 H 1.09002 * 110.75470 * 160.94964 * 19 14 12 38 38 H 1.09004 * 110.48501 * 203.37345 * 20 19 14 39 39 H 1.09009 * 110.48557 * 80.73810 * 20 19 14 40 40 H 1.09002 * 110.03403 * 264.32513 * 21 20 19 41 41 H 1.09004 * 110.03251 * 142.89166 * 21 20 19 42 42 H 1.09003 * 110.02947 * 240.71267 * 22 21 20 43 43 H 1.08994 * 110.03256 * 119.28155 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1121 2.0751 -1.1786 5 1 2.4446 3.1027 -1.1753 6 6 1.7792 1.4565 -2.3774 7 7 1.2284 0.2635 -2.3704 8 14 2.1150 2.3207 -3.9992 9 1 3.4741 1.9628 -4.4787 10 1 1.1077 1.8959 -5.0042 11 1 2.0300 3.7903 -3.8038 12 6 2.3755 1.9697 1.1588 13 8 2.6859 3.1421 1.1730 14 6 2.3889 1.1710 2.4366 15 6 0.9880 0.6454 2.7560 16 6 -0.0153 1.7989 2.6969 17 8 -1.3042 1.3302 3.0982 18 6 -2.3202 2.3349 3.0778 19 6 2.9253 2.0311 3.6078 20 6 4.4601 1.9524 3.4148 21 6 4.7097 0.5011 2.9554 22 6 3.3929 0.0042 2.3334 23 1 -0.3633 0.4700 -0.9138 24 1 -0.3633 -1.0265 0.0498 25 1 -0.3634 0.5563 0.8640 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.9956 -0.1683 -3.2073 29 1 0.7103 -0.1154 2.0264 30 1 0.9824 0.2097 3.7551 31 1 0.3069 2.5953 3.3679 32 1 -0.0690 2.1819 1.6779 33 1 -2.4216 2.7286 2.0665 34 1 -3.2678 1.8998 3.3954 35 1 -2.0462 3.1426 3.7564 36 1 2.5774 3.0605 3.5220 37 1 2.6341 1.6025 4.5668 38 1 4.9735 2.1483 4.3562 39 1 4.7848 2.6563 2.6484 40 1 4.9768 -0.1204 3.8101 41 1 5.5064 0.4766 2.2118 42 1 3.0209 -0.8584 2.8863 43 1 3.5505 -0.2614 1.2881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130540197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:26 Heat of formation + Delta-G solvation = -64.065423 kcal Electronic energy + Delta-G solvation = -23150.180464 eV Core-core repulsion = 20003.387221 eV Total energy + Delta-G solvation = -3146.793243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08678 -37.38943 -36.52112 -35.06442 -32.57190 -31.21527 -29.29944 -28.35296 -27.55724 -25.61617 -24.84205 -22.27062 -22.14076 -20.96461 -19.96943 -18.07386 -16.78084 -16.13317 -15.85555 -15.72000 -15.00685 -14.57308 -14.47585 -14.10139 -13.87673 -13.46422 -13.33438 -12.75826 -12.57795 -12.17705 -11.89647 -11.54074 -11.28942 -11.12729 -11.08924 -10.95325 -10.82104 -10.78757 -10.56643 -10.52868 -10.28830 -10.17494 -10.04652 -10.02451 -9.84485 -9.61484 -9.24965 -8.78768 -8.20474 -7.72397 -6.09913 -3.76128 3.16532 3.25665 3.30757 3.93039 4.04795 4.13672 4.86232 4.98048 5.04100 5.23330 5.34188 5.46062 5.48676 5.58995 5.70363 5.75419 5.82359 5.86988 5.91381 5.97704 6.00388 6.09838 6.23430 6.28277 6.33582 6.37927 6.39806 6.51205 6.59268 6.68607 6.70581 6.80940 6.86873 6.88596 6.99002 7.45151 7.50351 7.72087 7.81965 8.15795 8.62111 9.23870 9.53942 10.06757 10.72043 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.008548 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.629782 B = 3274.741741 C = 4231.813095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 N -0.441 5.441 4 C -0.289 4.289 5 H 0.101 0.899 6 C 0.021 3.979 7 N -0.879 5.879 8 Si 0.928 3.072 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.458 3.542 13 O -0.595 6.595 14 C -0.068 4.068 15 C -0.119 4.119 16 C 0.061 3.939 17 O -0.394 6.394 18 C 0.034 3.966 19 C -0.100 4.100 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.115 4.115 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.040 0.960 26 H 0.131 0.869 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 -2.372 8.868 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 N -0.159 5.159 4 C -0.417 4.417 5 H 0.119 0.881 6 C -0.178 4.178 7 N -0.522 5.522 8 Si 0.755 3.245 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.245 3.755 13 O -0.481 6.481 14 C -0.071 4.071 15 C -0.157 4.157 16 C -0.015 4.015 17 O -0.313 6.313 18 C -0.063 4.063 19 C -0.137 4.137 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.153 4.153 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.148 0.852 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.787 -2.124 8.723 9.012 hybrid contribution -0.030 0.535 -0.942 1.083 sum -0.818 -1.589 7.781 7.984 Atomic orbital electron populations 1.22327 0.97200 0.99432 1.02136 1.22438 0.94468 0.83782 1.02422 1.43769 1.54663 1.12204 1.05219 1.19816 1.41169 0.97939 0.82812 0.88075 1.25227 0.96746 0.96405 0.99463 1.69990 1.41539 1.14375 1.26273 0.85887 0.78002 0.79442 0.81146 1.20526 1.21041 1.19687 1.19582 0.84118 0.87565 0.84195 1.90476 1.54983 1.16650 1.85949 1.21373 0.94444 0.95951 0.95378 1.22045 0.92043 0.98492 1.03086 1.22638 0.82389 0.96806 0.99643 1.87804 1.18428 1.36178 1.88888 1.22665 0.91401 0.91940 1.00325 1.22369 0.95255 1.00390 0.95728 1.22303 0.96177 0.96767 1.00561 1.22111 0.97558 0.96561 0.99668 1.22356 0.94250 0.96736 1.01966 0.90443 0.94766 0.94097 0.85220 0.94115 0.92617 0.88345 0.91490 0.93678 0.92021 0.94076 0.90111 0.94524 0.90649 0.92020 0.92554 0.90874 0.92395 0.92182 0.91588 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.50 37.16 0.32 -3.00 16 2 C 0.09 2.05 4.13 -4.04 -0.02 2.03 16 3 N -0.44 -10.96 2.57 -114.81 -0.29 -11.26 16 4 C -0.29 -7.87 9.52 -14.94 -0.14 -8.01 16 5 H 0.10 2.92 7.18 -52.48 -0.38 2.55 16 6 C 0.02 0.55 5.36 -17.47 -0.09 0.45 16 7 N -0.88 -22.09 7.58 55.50 0.42 -21.67 16 8 Si 0.93 20.62 29.56 -169.99 -5.02 15.60 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.46 10.84 4.71 -10.98 -0.05 10.79 16 13 O -0.59 -16.02 14.79 5.55 0.08 -15.94 16 14 C -0.07 -1.27 0.28 -154.00 -0.04 -1.31 16 15 C -0.12 -2.10 3.84 -26.73 -0.10 -2.20 16 16 C 0.06 1.13 4.21 37.16 0.16 1.29 16 17 O -0.39 -6.84 10.55 -35.23 -0.37 -7.21 16 18 C 0.03 0.47 11.01 101.05 1.11 1.58 16 19 C -0.10 -1.70 4.89 -24.74 -0.12 -1.82 16 20 C -0.12 -1.95 6.53 -25.08 -0.16 -2.11 16 21 C -0.12 -1.84 6.80 -25.61 -0.17 -2.02 16 22 C -0.12 -1.93 4.58 -25.61 -0.12 -2.05 16 23 H 0.08 1.89 6.50 -51.93 -0.34 1.56 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.85 3.62 -51.93 -0.19 0.67 16 26 H 0.13 3.18 5.40 -52.29 -0.28 2.90 16 27 H 0.04 0.81 3.28 -51.93 -0.17 0.64 16 28 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.10 1.80 3.51 -51.93 -0.18 1.62 16 30 H 0.07 1.04 7.99 -51.93 -0.41 0.63 16 31 H 0.04 0.81 7.43 -51.92 -0.39 0.42 16 32 H 0.06 1.33 6.18 -51.93 -0.32 1.01 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.42 7.21 -51.93 -0.37 1.04 16 37 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.37 7.76 -51.92 -0.40 0.96 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 43 H 0.08 1.44 6.05 -51.93 -0.31 1.13 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -28.66 313.92 -6.56 -35.22 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.66 Total: 6.91 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.56 Total: -6.38 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.13 Total: -32.93 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.29 Total: -23.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.66 -6.56 -35.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130540197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.841 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds