Wall clock time and date at job start Mon Mar 30 2020 01:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47196 * 2 1 4 4 C 1.37096 * 120.00117 * 276.91328 * 3 2 1 5 5 H 1.08005 * 120.00095 * 178.20908 * 4 3 2 6 6 C 1.38945 * 119.99972 * 358.21539 * 4 3 2 7 7 N 1.31408 * 120.00404 * 7.92803 * 6 4 3 8 8 Si 1.86806 * 119.99887 * 187.93536 * 6 4 3 9 9 H 1.48497 * 109.47096 * 89.99889 * 8 6 4 10 10 H 1.48498 * 109.46987 * 209.99540 * 8 6 4 11 11 H 1.48497 * 109.46945 * 329.99670 * 8 6 4 12 12 C 1.34783 * 119.99943 * 96.91518 * 3 2 1 13 13 O 1.21286 * 119.99892 * 185.41442 * 12 3 2 14 14 C 1.50699 * 119.99753 * 5.41139 * 12 3 2 15 15 C 1.52999 * 110.54021 * 298.63119 * 14 12 3 16 16 C 1.52998 * 109.47437 * 308.96325 * 15 14 12 17 17 O 1.42898 * 109.47283 * 184.55740 * 16 15 14 18 18 C 1.42898 * 113.99976 * 180.02562 * 17 16 15 19 19 C 1.54889 * 110.48502 * 176.01701 * 14 12 3 20 20 C 1.54889 * 102.74855 * 279.26469 * 19 14 12 21 21 C 1.54259 * 104.19841 * 322.05664 * 20 19 14 22 22 C 1.53879 * 106.59804 * 23.61264 * 21 20 19 23 23 H 1.08997 * 109.47164 * 62.78029 * 1 2 3 24 24 H 1.09005 * 109.47058 * 182.78007 * 1 2 3 25 25 H 1.08995 * 109.47474 * 302.77854 * 1 2 3 26 26 H 1.09004 * 109.46737 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47200 * 120.00309 * 2 1 3 28 28 H 0.96998 * 120.00739 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47311 * 68.96858 * 15 14 12 30 30 H 1.09003 * 109.46996 * 188.96256 * 15 14 12 31 31 H 1.09007 * 109.46882 * 304.56097 * 16 15 14 32 32 H 1.08999 * 109.46869 * 64.55739 * 16 15 14 33 33 H 1.08999 * 109.47106 * 59.99746 * 18 17 16 34 34 H 1.08993 * 109.47147 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47174 * 299.99961 * 18 17 16 36 36 H 1.08998 * 110.75588 * 37.58279 * 19 14 12 37 37 H 1.09002 * 110.75470 * 160.94964 * 19 14 12 38 38 H 1.09004 * 110.48501 * 203.37345 * 20 19 14 39 39 H 1.09009 * 110.48557 * 80.73810 * 20 19 14 40 40 H 1.09002 * 110.03403 * 264.32513 * 21 20 19 41 41 H 1.09004 * 110.03251 * 142.89166 * 21 20 19 42 42 H 1.09003 * 110.02947 * 240.71267 * 22 21 20 43 43 H 1.08994 * 110.03256 * 119.28155 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1121 2.0751 -1.1786 5 1 2.4446 3.1027 -1.1753 6 6 1.7792 1.4565 -2.3774 7 7 1.2284 0.2635 -2.3704 8 14 2.1150 2.3207 -3.9992 9 1 3.4741 1.9628 -4.4787 10 1 1.1077 1.8959 -5.0042 11 1 2.0300 3.7903 -3.8038 12 6 2.3755 1.9697 1.1588 13 8 2.6859 3.1421 1.1730 14 6 2.3889 1.1710 2.4366 15 6 0.9880 0.6454 2.7560 16 6 -0.0153 1.7989 2.6969 17 8 -1.3042 1.3302 3.0982 18 6 -2.3202 2.3349 3.0778 19 6 2.9253 2.0311 3.6078 20 6 4.4601 1.9524 3.4148 21 6 4.7097 0.5011 2.9554 22 6 3.3929 0.0042 2.3334 23 1 -0.3633 0.4700 -0.9138 24 1 -0.3633 -1.0265 0.0498 25 1 -0.3634 0.5563 0.8640 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.9956 -0.1683 -3.2073 29 1 0.7103 -0.1154 2.0264 30 1 0.9824 0.2097 3.7551 31 1 0.3069 2.5953 3.3679 32 1 -0.0690 2.1819 1.6779 33 1 -2.4216 2.7286 2.0665 34 1 -3.2678 1.8998 3.3954 35 1 -2.0462 3.1426 3.7564 36 1 2.5774 3.0605 3.5220 37 1 2.6341 1.6025 4.5668 38 1 4.9735 2.1483 4.3562 39 1 4.7848 2.6563 2.6484 40 1 4.9768 -0.1204 3.8101 41 1 5.5064 0.4766 2.2118 42 1 3.0209 -0.8584 2.8863 43 1 3.5505 -0.2614 1.2881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130540197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:26 Heat of formation + Delta-G solvation = -81.078696 kcal Electronic energy + Delta-G solvation = -23150.918215 eV Core-core repulsion = 20003.387221 eV Total energy + Delta-G solvation = -3147.530994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71352 -38.78769 -38.10128 -36.98174 -34.18968 -32.96997 -31.10721 -29.71628 -28.89217 -27.09301 -26.52007 -24.05305 -23.54237 -22.66296 -21.27436 -19.76803 -18.72458 -17.55828 -17.39420 -17.23841 -16.68651 -16.01582 -15.94281 -15.75554 -15.36228 -15.15033 -14.97777 -14.29871 -14.13747 -13.73898 -13.50175 -13.10633 -12.93963 -12.84425 -12.63330 -12.53639 -12.26995 -12.15057 -12.11955 -12.07748 -11.93350 -11.82434 -11.66473 -11.47665 -11.29509 -11.16492 -10.74380 -10.60416 -10.08890 -9.67037 -8.06684 -5.81136 1.35705 1.39938 1.50632 2.11150 2.27418 2.74409 3.15226 3.15407 3.62153 3.74957 3.91376 4.09043 4.17113 4.32273 4.40928 4.46832 4.53180 4.54858 4.57188 4.60896 4.67445 4.77434 4.81619 4.88884 4.99753 5.03064 5.05494 5.07153 5.11215 5.12136 5.19043 5.26979 5.35576 5.41646 5.47129 5.60676 5.78917 5.93598 6.16162 6.19513 6.65843 7.25513 7.63453 8.16426 8.71414 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.008548 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.629782 B = 3274.741741 C = 4231.813095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.098 3.902 3 N -0.452 5.452 4 C -0.331 4.331 5 H 0.068 0.932 6 C -0.004 4.004 7 N -0.878 5.878 8 Si 0.984 3.016 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.282 1.282 12 C 0.450 3.550 13 O -0.640 6.640 14 C -0.066 4.066 15 C -0.114 4.114 16 C 0.070 3.930 17 O -0.401 6.401 18 C 0.025 3.975 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.116 4.116 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.267 0.733 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.029 0.971 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -4.345 10.697 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 N -0.169 5.169 4 C -0.459 4.459 5 H 0.086 0.914 6 C -0.204 4.204 7 N -0.519 5.519 8 Si 0.809 3.191 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.240 3.760 13 O -0.528 6.528 14 C -0.070 4.070 15 C -0.152 4.152 16 C -0.006 4.006 17 O -0.320 6.320 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.154 4.154 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.992 -4.135 10.550 11.375 hybrid contribution -0.028 1.194 -1.515 1.929 sum -1.019 -2.941 9.035 9.556 Atomic orbital electron populations 1.22188 0.96731 1.00427 1.00625 1.22385 0.94719 0.82534 1.02811 1.43946 1.54958 1.12984 1.05048 1.19651 1.43974 0.97421 0.84881 0.91364 1.25832 0.95936 0.97132 1.01486 1.70117 1.40257 1.14453 1.27098 0.85072 0.78306 0.77873 0.77875 1.19810 1.19616 1.20752 1.20560 0.82404 0.87486 0.85560 1.90436 1.56558 1.18930 1.86920 1.21395 0.96149 0.96476 0.92949 1.22023 0.90661 0.97734 1.04736 1.22437 0.83581 0.97318 0.97275 1.87779 1.18318 1.37333 1.88612 1.22914 0.91810 0.92168 1.00195 1.22404 0.95663 0.98811 0.96562 1.22289 0.95892 0.96721 1.00921 1.22121 0.96374 0.96169 1.00759 1.22397 0.94637 0.96995 1.01323 0.93725 0.92535 0.93592 0.87313 0.91131 0.92164 0.89058 0.88008 0.93458 0.96199 0.95221 0.87136 0.93198 0.93349 0.88249 0.89344 0.94867 0.88534 0.93051 0.87999 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.13 8.50 71.98 0.61 -5.52 16 2 C 0.10 4.38 4.13 86.38 0.36 4.73 16 3 N -0.45 -23.32 2.57 -635.55 -1.63 -24.95 16 4 C -0.33 -18.96 9.52 84.04 0.80 -18.16 16 5 H 0.07 4.26 7.18 -2.91 -0.02 4.24 16 6 C 0.00 -0.21 5.36 84.93 0.46 0.25 16 7 N -0.88 -44.62 7.58 21.66 0.16 -44.46 16 8 Si 0.98 43.15 29.56 68.60 2.03 45.17 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 C 0.45 22.07 4.71 87.66 0.41 22.49 16 13 O -0.64 -36.56 14.79 -3.05 -0.05 -36.61 16 14 C -0.07 -2.40 0.28 -51.85 -0.01 -2.42 16 15 C -0.11 -3.76 3.84 30.59 0.12 -3.64 16 16 C 0.07 2.56 4.21 71.98 0.30 2.86 16 17 O -0.40 -13.26 10.55 -148.98 -1.57 -14.83 16 18 C 0.03 0.67 11.01 113.37 1.25 1.92 16 19 C -0.10 -3.12 4.89 31.89 0.16 -2.97 16 20 C -0.12 -3.70 6.53 31.67 0.21 -3.50 16 21 C -0.12 -3.21 6.80 31.32 0.21 -2.99 16 22 C -0.12 -3.58 4.58 31.32 0.14 -3.44 16 23 H 0.04 2.21 6.50 -2.39 -0.02 2.19 16 24 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 25 H 0.05 1.92 3.62 -2.39 -0.01 1.92 16 26 H 0.11 5.38 5.40 -3.10 -0.02 5.37 16 27 H 0.07 2.72 3.28 -2.39 -0.01 2.71 16 28 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 29 H 0.09 3.13 3.51 -2.39 -0.01 3.12 16 30 H 0.10 2.69 7.99 -2.39 -0.02 2.67 16 31 H 0.05 1.68 7.43 -2.38 -0.02 1.66 16 32 H 0.02 0.89 6.18 -2.39 -0.01 0.87 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.82 7.21 -2.39 -0.02 1.80 16 37 H 0.10 2.47 7.94 -2.39 -0.02 2.45 16 38 H 0.09 2.12 8.14 -2.38 -0.02 2.11 16 39 H 0.03 1.26 7.76 -2.38 -0.02 1.24 16 40 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.10 2.44 7.84 -2.39 -0.02 2.42 16 43 H 0.05 1.92 6.05 -2.39 -0.01 1.90 16 Total: -1.00 -66.07 313.92 4.95 -61.12 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 1.00 Total: 24.94 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.01 Total: -10.39 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.47 Total: -69.41 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -1.62 Total: -51.44 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.07 4.95 -61.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130540197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.959 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds