Wall clock time and date at job start Mon Mar 30 2020 01:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47524 * 239.99612 * 2 1 3 5 5 O 1.45203 * 109.47101 * 119.99536 * 2 1 3 6 6 C 1.34636 * 116.99909 * 60.00134 * 5 2 1 7 7 O 1.21509 * 120.00106 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00070 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 9 14 14 H 1.09002 * 109.47067 * 300.00341 * 13 12 11 15 15 C 1.50703 * 109.47292 * 180.02562 * 13 12 11 16 16 H 1.07996 * 119.99751 * 240.00190 * 15 13 12 17 17 C 1.37880 * 119.99788 * 60.00122 * 15 13 12 18 18 N 1.31510 * 119.99893 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 119.99568 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47545 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46892 * 120.00078 * 19 17 15 22 22 H 1.48496 * 109.47356 * 239.99680 * 19 17 15 23 23 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 24 24 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 25 25 H 1.09001 * 109.47288 * 299.99905 * 1 2 3 26 26 H 1.08997 * 109.47246 * 60.00117 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47317 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47032 * 299.99708 * 3 2 1 30 30 H 1.08994 * 109.47302 * 59.99740 * 3 2 1 31 31 H 1.09002 * 109.47054 * 300.00242 * 4 2 1 32 32 H 1.08997 * 109.46638 * 59.99899 * 4 2 1 33 33 H 1.08993 * 109.47517 * 179.97438 * 4 2 1 34 34 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.47194 * 299.99493 * 11 9 8 36 36 H 1.08992 * 109.47399 * 59.99666 * 11 9 8 37 37 H 1.09000 * 109.47437 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47508 * 59.99571 * 12 11 9 39 39 H 0.96996 * 119.99480 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47375 * 180.02562 * 23 13 12 41 41 H 1.09002 * 109.47497 * 59.99850 * 23 13 12 42 42 H 1.09002 * 109.47075 * 299.99543 * 24 9 8 43 43 H 1.08996 * 109.47407 * 60.00500 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4169 9 6 1.6739 -4.0667 2.5834 10 1 0.6645 -4.2086 2.1972 11 6 2.6452 -4.9645 1.8144 12 6 2.2332 -6.4278 1.9878 13 6 2.2668 -6.7945 3.4728 14 1 3.2761 -6.6528 3.8593 15 6 1.8616 -8.2359 3.6437 16 1 0.9976 -8.4867 4.2409 17 6 2.5942 -9.2344 3.0374 18 7 3.6467 -8.9288 2.3105 19 14 2.0923 -11.0211 3.2498 20 1 0.8830 -11.0970 4.1082 21 1 1.7933 -11.6125 1.9208 22 1 3.2014 -11.7742 3.8884 23 6 1.2956 -5.8966 4.2419 24 6 1.7079 -4.4329 4.0686 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1391 33 1 3.1300 -0.7209 -1.2494 34 1 2.6276 -2.2366 3.0830 35 1 2.6209 -4.7036 0.7563 36 1 3.6545 -4.8226 2.2005 37 1 2.9254 -7.0675 1.4403 38 1 1.2239 -6.5694 1.6013 39 1 4.1617 -9.6313 1.8837 40 1 1.3198 -6.1575 5.3000 41 1 0.2863 -6.0382 3.8555 42 1 2.7173 -4.2911 4.4547 43 1 1.0160 -3.7933 4.6165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142715154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:25 Heat of formation + Delta-G solvation = -112.363709 kcal Electronic energy + Delta-G solvation = -21535.247677 eV Core-core repulsion = 18386.360062 eV Total energy + Delta-G solvation = -3148.887614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.64328 -38.33323 -36.56985 -34.40004 -33.77108 -32.10739 -29.79076 -28.73529 -27.51982 -27.43550 -24.76976 -22.54911 -21.74268 -20.59906 -19.98003 -18.89730 -17.81363 -16.54446 -16.31934 -15.94442 -15.27782 -14.68141 -14.42950 -14.40043 -13.69511 -13.47174 -13.18746 -12.85790 -12.62377 -12.37780 -12.22829 -11.97218 -11.95346 -11.87663 -11.49602 -11.38413 -11.33172 -11.04151 -10.82230 -10.54515 -10.48858 -10.33687 -10.25074 -10.00112 -9.86620 -9.37969 -9.14198 -8.72889 -8.55823 -8.26937 -5.95786 -4.01815 2.35277 3.07030 3.31501 3.39840 3.43480 4.31063 4.46654 4.63858 4.67362 4.82325 5.25037 5.33526 5.34713 5.42618 5.48927 5.55210 5.57260 5.65850 5.77367 5.78513 5.86195 6.08225 6.11664 6.23128 6.27053 6.30996 6.36811 6.46068 6.59514 6.68254 6.72380 6.84036 6.92222 7.12736 7.27612 7.50918 7.71293 7.77981 8.03261 8.17924 8.49064 8.62140 9.02497 9.62958 11.09869 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041236 B = 0.003723 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.860658 B = 7519.557085 C = 7780.839284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.568 6.568 8 N -0.705 5.705 9 C 0.163 3.837 10 H 0.086 0.914 11 C -0.125 4.125 12 C -0.106 4.106 13 C 0.046 3.954 14 H 0.026 0.974 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.105 4.105 24 C -0.122 4.122 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.400 0.600 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.259 0.741 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 18.488 -2.692 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.286 6.286 6 C 0.399 3.601 7 O -0.457 6.457 8 N -0.362 5.362 9 C 0.061 3.939 10 H 0.104 0.896 11 C -0.164 4.164 12 C -0.145 4.145 13 C 0.028 3.972 14 H 0.044 0.956 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.143 4.143 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.234 0.766 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.706 18.196 -3.263 18.683 hybrid contribution 0.072 -0.747 0.247 0.790 sum -2.634 17.449 -3.016 17.903 Atomic orbital electron populations 1.22514 0.94165 1.05217 1.02141 1.21991 0.94266 0.91376 0.82446 1.21849 1.02183 0.92786 1.02866 1.22517 1.01534 1.03773 0.96297 1.86285 1.71825 1.24247 1.46221 1.18159 0.79093 0.80124 0.82697 1.90890 1.41406 1.70342 1.43082 1.45161 1.54924 1.13113 1.23034 1.21224 0.99831 0.76111 0.96748 0.89629 1.22022 0.98082 0.97731 0.98568 1.21601 1.00684 0.91301 1.00901 1.18702 0.94316 0.93092 0.91105 0.95585 1.21254 1.12263 0.91075 1.30455 0.92691 1.24970 0.94973 0.98868 0.95240 1.69882 1.17652 1.32361 1.33006 0.86587 0.78460 0.85413 0.77833 1.19839 1.21098 1.21144 1.21606 1.00476 0.91726 1.00469 1.21864 1.01428 0.99099 0.93584 0.92353 0.91379 0.89195 0.91556 0.90341 0.91626 0.89120 0.91400 0.92237 0.76608 0.93309 0.92747 0.88753 0.94532 0.93145 0.92817 0.93028 0.91919 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.37 37.15 0.31 -1.75 16 2 C 0.14 1.58 1.13 -90.62 -0.10 1.48 16 3 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.18 -2.17 8.37 37.16 0.31 -1.85 16 5 O -0.37 -5.17 9.94 -40.31 -0.40 -5.57 16 6 C 0.65 10.38 8.02 54.06 0.43 10.81 16 7 O -0.57 -10.47 11.54 -19.28 -0.22 -10.70 16 8 N -0.70 -10.56 5.08 -58.73 -0.30 -10.86 16 9 C 0.16 2.81 2.45 -67.93 -0.17 2.64 16 10 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 11 C -0.13 -2.48 5.49 -26.73 -0.15 -2.63 16 12 C -0.11 -2.49 4.98 -26.73 -0.13 -2.63 16 13 C 0.05 1.11 2.10 -91.77 -0.19 0.92 16 14 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 15 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.10 -2.07 5.15 -26.70 -0.14 -2.21 16 24 C -0.12 -1.98 5.40 -26.70 -0.14 -2.13 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 4.97 8.71 -40.82 -0.36 4.61 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -29.32 335.22 -7.85 -37.17 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.56 Total: 4.12 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.03 Total: -10.79 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.33 Total: -35.50 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.62 Total: -16.27 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.32 -7.85 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142715154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.193 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds