Wall clock time and date at job start Mon Mar 30 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45195 * 109.47205 * 2 1 4 4 C 1.34237 * 116.99929 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99745 * 180.02562 * 4 3 2 7 7 N 1.46893 * 109.47452 * 319.40510 * 6 4 3 8 8 C 1.46902 * 111.00169 * 174.78505 * 7 6 4 9 9 C 1.46899 * 111.00108 * 298.73897 * 7 6 4 10 10 C 1.50706 * 109.47189 * 163.89852 * 9 7 6 11 11 H 1.08000 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99819 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99677 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00407 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46772 * 90.00116 * 14 12 10 16 16 H 1.48500 * 109.47120 * 210.00458 * 14 12 10 17 17 H 1.48498 * 109.46800 * 330.00237 * 14 12 10 18 18 C 1.53001 * 109.47090 * 199.40452 * 6 4 3 19 19 C 1.53001 * 109.47406 * 300.00458 * 18 6 4 20 20 C 1.53003 * 109.46719 * 299.99558 * 19 18 6 21 21 C 1.53000 * 109.47143 * 59.99886 * 20 19 18 22 22 C 1.52992 * 109.47348 * 300.00110 * 21 20 19 23 23 H 1.08997 * 109.47177 * 300.00216 * 1 2 3 24 24 H 1.09011 * 109.47102 * 60.00000 * 1 2 3 25 25 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47181 * 120.00460 * 2 1 3 27 27 H 1.09011 * 109.47106 * 239.99875 * 2 1 3 28 28 H 1.08993 * 109.47104 * 60.00457 * 8 7 6 29 29 H 1.09003 * 109.47031 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47387 * 300.00021 * 8 7 6 31 31 H 1.08996 * 109.47454 * 283.90225 * 9 7 6 32 32 H 1.09004 * 109.46886 * 43.90249 * 9 7 6 33 33 H 0.97001 * 119.99581 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46948 * 60.00187 * 18 6 4 35 35 H 1.09001 * 109.47637 * 179.97438 * 18 6 4 36 36 H 1.09000 * 109.47155 * 179.97438 * 19 18 6 37 37 H 1.08996 * 109.47433 * 59.99463 * 19 18 6 38 38 H 1.08996 * 109.47090 * 300.00115 * 20 19 18 39 39 H 1.09000 * 109.46779 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47271 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.46836 * 59.99859 * 21 20 19 42 42 H 1.09004 * 109.46947 * 299.99681 * 22 21 20 43 43 H 1.08997 * 109.47826 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 7 3.1357 3.7923 -0.9003 8 6 3.5912 5.1872 -0.8317 9 6 3.1850 3.2896 -2.2797 10 6 2.0836 3.9276 -3.0866 11 1 1.4143 4.6360 -2.6213 12 6 1.9306 3.6070 -4.4187 13 7 0.9697 4.1642 -5.1230 14 14 3.0888 2.3822 -5.2237 15 1 2.5335 1.0118 -5.0862 16 1 3.2374 2.7141 -6.6635 17 1 4.4163 2.4473 -4.5613 18 6 5.3727 2.8888 -0.4800 19 6 6.1904 1.9983 0.4577 20 6 6.1410 2.5701 1.8760 21 6 4.6891 2.6187 2.3560 22 6 3.8714 3.5091 1.4183 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 4.6398 5.2418 -1.1241 29 1 2.9929 5.7984 -1.5075 30 1 3.4785 5.5566 0.1876 31 1 4.1498 3.5371 -2.7223 32 1 3.0534 2.2076 -2.2770 33 1 0.8623 3.9388 -6.0603 34 1 5.4079 2.4815 -1.4904 35 1 5.7892 3.8961 -0.4800 36 1 7.2247 1.9634 0.1154 37 1 5.7738 0.9911 0.4573 38 1 6.5576 3.5773 1.8763 39 1 6.7232 1.9354 2.5440 40 1 4.6539 3.0256 3.3666 41 1 4.2724 1.6114 2.3556 42 1 4.2880 4.5164 1.4188 43 1 2.8369 3.5434 1.7600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151207985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:56 Heat of formation + Delta-G solvation = -84.061320 kcal Electronic energy + Delta-G solvation = -22938.968346 eV Core-core repulsion = 19791.308015 eV Total energy + Delta-G solvation = -3147.660331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95596 -38.36582 -36.22385 -35.28978 -32.51821 -31.46619 -30.67563 -29.65283 -27.83969 -25.43367 -23.68933 -22.65603 -22.15083 -21.22218 -20.26947 -19.18210 -17.19016 -16.79901 -16.27388 -15.63206 -15.35108 -14.50738 -14.38550 -14.15883 -13.69723 -13.55872 -13.41839 -13.18128 -12.69120 -12.54804 -12.40226 -12.15301 -12.04211 -11.81060 -11.62019 -11.51002 -11.26600 -11.18725 -10.84498 -10.75407 -10.74182 -10.35364 -10.14931 -10.13659 -10.05074 -9.80064 -9.40917 -9.25172 -8.57667 -7.45171 -6.06324 -4.02925 2.58969 3.09287 3.26664 3.34027 3.37078 4.40269 4.45011 4.76157 4.87030 5.03341 5.17400 5.20807 5.24857 5.25419 5.35216 5.37964 5.48605 5.60194 5.61478 5.73196 5.83545 5.87799 5.95378 6.00311 6.03607 6.12519 6.20528 6.24351 6.26360 6.27511 6.38510 6.43762 6.52724 6.58419 6.78318 6.88045 7.08398 7.50591 7.75355 7.88434 8.25925 8.62343 9.03658 9.55470 11.06661 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.008098 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.266239 B = 3456.650429 C = 4128.304382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.326 6.326 4 C 0.491 3.509 5 O -0.518 6.518 6 C 0.120 3.880 7 N -0.509 5.509 8 C 0.030 3.970 9 C 0.162 3.838 10 C -0.502 4.502 11 H 0.084 0.916 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.866 3.134 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.135 4.135 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.107 4.107 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.057 0.943 31 H -0.005 1.005 32 H 0.016 0.984 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -4.367 13.840 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.241 6.241 4 C 0.335 3.665 5 O -0.408 6.408 6 C 0.029 3.971 7 N -0.233 5.233 8 C -0.118 4.118 9 C 0.036 3.964 10 C -0.540 4.540 11 H 0.102 0.898 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.693 3.307 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.174 4.174 19 C -0.180 4.180 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.144 4.144 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.013 0.987 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.701 -4.681 13.792 15.641 hybrid contribution 1.427 -0.848 -1.014 1.945 sum 7.128 -5.530 12.778 15.642 Atomic orbital electron populations 1.21768 0.92729 1.02271 1.04045 1.22964 0.95628 0.81247 1.01708 1.86708 1.23954 1.30747 1.82685 1.23504 0.80652 0.91871 0.70482 1.90441 1.59848 1.43244 1.47224 1.20952 0.91538 0.88225 0.96420 1.62273 1.50349 1.01353 1.09323 1.22395 0.98123 0.89887 1.01369 1.20242 0.96747 0.95144 0.84255 1.20944 1.13542 1.25821 0.93681 0.89816 1.24843 0.95172 0.95918 0.97123 1.69884 1.31742 1.43597 1.08504 0.87000 0.82238 0.82360 0.79073 1.20181 1.20974 1.19303 1.22077 0.94114 1.00942 1.00313 1.22041 0.99418 1.02714 0.93864 1.21502 0.96096 1.00684 0.96947 1.21601 0.95861 1.00021 0.98617 1.21661 1.01598 0.99616 0.91555 0.91677 0.90738 0.90876 0.92005 0.91655 0.96287 0.89756 0.92435 0.98728 0.96657 0.92662 0.91277 0.90727 0.92790 0.87643 0.92403 0.92347 0.91592 0.92236 0.90052 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.29 37.15 0.38 -1.60 16 2 C 0.06 0.92 6.19 37.15 0.23 1.15 16 3 O -0.33 -6.28 9.98 -39.27 -0.39 -6.67 16 4 C 0.49 9.42 3.96 36.00 0.14 9.56 16 5 O -0.52 -10.13 12.68 -18.75 -0.24 -10.36 16 6 C 0.12 2.14 0.41 -132.76 -0.06 2.09 16 7 N -0.51 -10.53 4.36 -229.95 -1.00 -11.53 16 8 C 0.03 0.54 8.61 60.07 0.52 1.06 16 9 C 0.16 3.97 2.70 -4.97 -0.01 3.95 16 10 C -0.50 -14.19 9.10 -34.44 -0.31 -14.51 16 11 H 0.08 2.56 7.78 -52.49 -0.41 2.15 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 14 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 18 C -0.14 -2.28 3.89 -26.73 -0.10 -2.39 16 19 C -0.14 -2.10 5.63 -26.73 -0.15 -2.25 16 20 C -0.11 -1.41 5.92 -26.73 -0.16 -1.56 16 21 C -0.12 -1.55 5.70 -26.74 -0.15 -1.70 16 22 C -0.11 -1.53 4.32 -26.73 -0.12 -1.64 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.02 0.32 6.44 -51.93 -0.33 -0.01 16 29 H 0.08 1.68 7.21 -51.93 -0.37 1.30 16 30 H 0.06 0.86 6.22 -51.93 -0.32 0.54 16 31 H 0.00 -0.12 6.21 -51.93 -0.32 -0.44 16 32 H 0.02 0.40 6.07 -51.93 -0.32 0.08 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 35 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.76 4.95 -51.97 -0.26 1.51 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.83 7.02 -51.93 -0.36 0.46 16 42 H 0.08 1.05 6.33 -51.93 -0.33 0.72 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -31.20 322.62 -7.66 -38.87 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.11 Total: 0.14 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.11 Total: -5.88 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.23 Total: -38.15 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.63 Total: -17.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.20 -7.66 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151207985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.195 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds