Wall clock time and date at job start Mon Mar 30 2020 01:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45195 * 109.47205 * 2 1 4 4 C 1.34237 * 116.99929 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99745 * 180.02562 * 4 3 2 7 7 N 1.46893 * 109.47452 * 319.40510 * 6 4 3 8 8 C 1.46902 * 111.00169 * 174.78505 * 7 6 4 9 9 C 1.46899 * 111.00108 * 298.73897 * 7 6 4 10 10 C 1.50706 * 109.47189 * 163.89852 * 9 7 6 11 11 H 1.08000 * 119.99949 * 0.02562 * 10 9 7 12 12 C 1.37872 * 119.99819 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99677 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00407 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46772 * 90.00116 * 14 12 10 16 16 H 1.48500 * 109.47120 * 210.00458 * 14 12 10 17 17 H 1.48498 * 109.46800 * 330.00237 * 14 12 10 18 18 C 1.53001 * 109.47090 * 199.40452 * 6 4 3 19 19 C 1.53001 * 109.47406 * 300.00458 * 18 6 4 20 20 C 1.53003 * 109.46719 * 299.99558 * 19 18 6 21 21 C 1.53000 * 109.47143 * 59.99886 * 20 19 18 22 22 C 1.52992 * 109.47348 * 300.00110 * 21 20 19 23 23 H 1.08997 * 109.47177 * 300.00216 * 1 2 3 24 24 H 1.09011 * 109.47102 * 60.00000 * 1 2 3 25 25 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47181 * 120.00460 * 2 1 3 27 27 H 1.09011 * 109.47106 * 239.99875 * 2 1 3 28 28 H 1.08993 * 109.47104 * 60.00457 * 8 7 6 29 29 H 1.09003 * 109.47031 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47387 * 300.00021 * 8 7 6 31 31 H 1.08996 * 109.47454 * 283.90225 * 9 7 6 32 32 H 1.09004 * 109.46886 * 43.90249 * 9 7 6 33 33 H 0.97001 * 119.99581 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46948 * 60.00187 * 18 6 4 35 35 H 1.09001 * 109.47637 * 179.97438 * 18 6 4 36 36 H 1.09000 * 109.47155 * 179.97438 * 19 18 6 37 37 H 1.08996 * 109.47433 * 59.99463 * 19 18 6 38 38 H 1.08996 * 109.47090 * 300.00115 * 20 19 18 39 39 H 1.09000 * 109.46779 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47271 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.46836 * 59.99859 * 21 20 19 42 42 H 1.09004 * 109.46947 * 299.99681 * 22 21 20 43 43 H 1.08997 * 109.47826 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 7 3.1357 3.7923 -0.9003 8 6 3.5912 5.1872 -0.8317 9 6 3.1850 3.2896 -2.2797 10 6 2.0836 3.9276 -3.0866 11 1 1.4143 4.6360 -2.6213 12 6 1.9306 3.6070 -4.4187 13 7 0.9697 4.1642 -5.1230 14 14 3.0888 2.3822 -5.2237 15 1 2.5335 1.0118 -5.0862 16 1 3.2374 2.7141 -6.6635 17 1 4.4163 2.4473 -4.5613 18 6 5.3727 2.8888 -0.4800 19 6 6.1904 1.9983 0.4577 20 6 6.1410 2.5701 1.8760 21 6 4.6891 2.6187 2.3560 22 6 3.8714 3.5091 1.4183 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 4.6398 5.2418 -1.1241 29 1 2.9929 5.7984 -1.5075 30 1 3.4785 5.5566 0.1876 31 1 4.1498 3.5371 -2.7223 32 1 3.0534 2.2076 -2.2770 33 1 0.8623 3.9388 -6.0603 34 1 5.4079 2.4815 -1.4904 35 1 5.7892 3.8961 -0.4800 36 1 7.2247 1.9634 0.1154 37 1 5.7738 0.9911 0.4573 38 1 6.5576 3.5773 1.8763 39 1 6.7232 1.9354 2.5440 40 1 4.6539 3.0256 3.3666 41 1 4.2724 1.6114 2.3556 42 1 4.2880 4.5164 1.4188 43 1 2.8369 3.5434 1.7600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151207985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:55 Heat of formation + Delta-G solvation = -103.796514 kcal Electronic energy + Delta-G solvation = -22939.824128 eV Core-core repulsion = 19791.308015 eV Total energy + Delta-G solvation = -3148.516113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35262 -39.74714 -37.72077 -36.67190 -34.63940 -32.69608 -31.85956 -31.13293 -29.58534 -26.97037 -25.13323 -23.96632 -23.46282 -22.76814 -21.56992 -20.58182 -19.13940 -18.37046 -17.74410 -17.03447 -16.73752 -16.43424 -15.65019 -15.44082 -15.27037 -15.06872 -14.65732 -14.61229 -14.43912 -13.97219 -13.62937 -13.47659 -13.37955 -13.25403 -12.97177 -12.87677 -12.78342 -12.55442 -12.48907 -12.37065 -11.99493 -11.91686 -11.75250 -11.52557 -11.47853 -11.33574 -11.10301 -10.82465 -10.63012 -9.06851 -8.32343 -6.33443 1.12948 1.24571 1.26464 1.35594 1.76995 2.26644 2.95417 3.01854 3.50892 3.68070 3.84166 3.98445 4.06675 4.12474 4.14444 4.22270 4.29537 4.41742 4.44440 4.48447 4.62988 4.64919 4.76014 4.81161 4.81967 4.87667 4.90953 4.97515 5.06649 5.11490 5.17696 5.22096 5.24214 5.30084 5.32653 5.38368 5.48654 5.78915 5.89173 6.23101 6.48946 6.72471 6.83525 7.28793 8.84027 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.008098 C = 0.006781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.266239 B = 3456.650429 C = 4128.304382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.348 6.348 4 C 0.482 3.518 5 O -0.528 6.528 6 C 0.117 3.883 7 N -0.525 5.525 8 C 0.032 3.968 9 C 0.180 3.820 10 C -0.504 4.504 11 H 0.048 0.952 12 C 0.018 3.982 13 N -0.940 5.940 14 Si 0.926 3.074 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.259 1.259 18 C -0.134 4.134 19 C -0.140 4.140 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.103 4.103 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.093 0.907 31 H -0.008 1.008 32 H 0.000 1.000 33 H 0.267 0.733 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.102 0.898 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 -4.734 15.783 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.264 6.264 4 C 0.327 3.673 5 O -0.418 6.418 6 C 0.025 3.975 7 N -0.249 5.249 8 C -0.115 4.115 9 C 0.053 3.947 10 C -0.543 4.543 11 H 0.066 0.934 12 C -0.180 4.180 13 N -0.580 5.580 14 Si 0.750 3.250 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.183 1.183 18 C -0.173 4.173 19 C -0.177 4.177 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.140 4.140 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.010 0.990 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.120 0.880 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.440 -5.045 15.754 18.138 hybrid contribution 0.819 -0.730 -1.564 1.911 sum 8.259 -5.775 14.189 17.404 Atomic orbital electron populations 1.21788 0.90869 1.04192 1.03266 1.23258 0.97152 0.79916 1.02029 1.86696 1.24217 1.32820 1.82621 1.23888 0.80650 0.92526 0.70246 1.90441 1.59956 1.43719 1.47688 1.21181 0.91391 0.87160 0.97733 1.62104 1.52407 1.02967 1.07433 1.22417 0.98154 0.87996 1.02963 1.19854 0.94789 0.93722 0.86310 1.21141 1.13883 1.25043 0.94220 0.93389 1.25618 0.96747 0.97769 0.97826 1.70010 1.33627 1.45331 1.09066 0.86037 0.80485 0.79893 0.78562 1.19816 1.19738 1.18300 1.22076 0.93985 1.02116 0.99083 1.21979 0.99381 1.01092 0.95295 1.21501 0.96146 1.01929 0.95186 1.21600 0.95570 0.98806 0.99672 1.21715 1.02128 1.00832 0.89335 0.90671 0.93182 0.87606 0.90029 0.92931 0.94978 0.92520 0.88814 0.99033 0.98207 0.92350 0.94489 0.89112 0.91540 0.89884 0.90525 0.90600 0.88551 0.93957 0.87997 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 10.29 71.98 0.74 -2.94 16 2 C 0.05 1.55 6.19 71.98 0.45 2.00 16 3 O -0.35 -13.53 9.98 -51.48 -0.51 -14.04 16 4 C 0.48 18.43 3.96 71.23 0.28 18.71 16 5 O -0.53 -20.60 12.68 21.98 0.28 -20.32 16 6 C 0.12 4.02 0.41 2.78 0.00 4.02 16 7 N -0.53 -21.65 4.36 -881.41 -3.84 -25.49 16 8 C 0.03 1.11 8.61 127.69 1.10 2.21 16 9 C 0.18 8.96 2.70 85.56 0.23 9.19 16 10 C -0.50 -29.48 9.10 25.60 0.23 -29.25 16 11 H 0.05 3.08 7.78 -2.91 -0.02 3.06 16 12 C 0.02 1.09 5.47 84.65 0.46 1.55 16 13 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 14 Si 0.93 45.64 27.47 68.60 1.88 47.53 16 15 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 18 C -0.13 -4.30 3.89 30.59 0.12 -4.19 16 19 C -0.14 -3.81 5.63 30.60 0.17 -3.64 16 20 C -0.11 -2.27 5.92 30.60 0.18 -2.09 16 21 C -0.12 -2.58 5.70 30.59 0.17 -2.40 16 22 C -0.10 -2.65 4.32 30.59 0.13 -2.52 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 27 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.03 1.03 6.44 -2.39 -0.02 1.01 16 29 H 0.06 2.28 7.21 -2.39 -0.02 2.27 16 30 H 0.09 2.56 6.22 -2.39 -0.01 2.55 16 31 H -0.01 -0.39 6.21 -2.39 -0.01 -0.41 16 32 H 0.00 0.00 6.07 -2.39 -0.01 -0.02 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.04 1.40 6.76 -2.39 -0.02 1.39 16 35 H 0.09 2.58 6.53 -2.39 -0.02 2.57 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.68 4.95 -3.00 -0.01 2.67 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.04 1.07 7.02 -2.38 -0.02 1.06 16 42 H 0.10 2.21 6.33 -2.38 -0.02 2.19 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.69 322.62 3.31 -66.38 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.92 Total: 13.77 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 4.27 Total: -9.34 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -3.54 Total: -83.98 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.24 Total: -34.37 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Total: -69.69 3.31 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151207985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.415 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds