Wall clock time and date at job start Mon Mar 30 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47636 * 2 1 4 4 C 1.42899 * 114.00397 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.86341 * 20.33329 * 4 3 2 6 6 C 1.53868 * 113.63657 * 249.06897 * 4 3 2 7 7 C 1.54140 * 87.05626 * 220.33526 * 6 4 3 8 8 H 1.09000 * 113.63366 * 270.59713 * 7 6 4 9 9 O 1.42895 * 113.71946 * 139.63862 * 7 6 4 10 10 C 1.53327 * 86.95370 * 25.11320 * 7 6 4 11 11 C 1.52788 * 113.62341 * 89.53094 * 10 7 6 12 12 C 1.53194 * 109.01738 * 184.88148 * 11 10 7 13 13 N 1.46831 * 109.45172 * 303.09665 * 12 11 10 14 14 C 1.46896 * 111.00254 * 187.76224 * 13 12 11 15 15 C 1.50699 * 109.47359 * 65.47948 * 14 13 12 16 16 H 1.08011 * 119.99614 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00545 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99298 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47396 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47320 * 120.00270 * 19 17 15 22 22 H 1.48504 * 109.47051 * 239.99904 * 19 17 15 23 23 C 1.46835 * 111.43738 * 63.48841 * 13 12 11 24 24 C 1.52800 * 113.61919 * 220.09089 * 10 7 6 25 25 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46865 * 300.00271 * 1 2 3 27 27 H 1.08999 * 109.47241 * 59.99669 * 1 2 3 28 28 H 1.09002 * 109.47364 * 239.99902 * 2 1 3 29 29 H 1.09008 * 109.47079 * 120.00242 * 2 1 3 30 30 H 1.08993 * 113.60025 * 334.85875 * 6 4 3 31 31 H 1.09003 * 113.59869 * 105.71859 * 6 4 3 32 32 H 0.96696 * 113.99947 * 82.59109 * 9 7 6 33 33 H 1.09004 * 109.54845 * 304.74337 * 11 10 7 34 34 H 1.09005 * 109.54791 * 65.02188 * 11 10 7 35 35 H 1.08996 * 109.47865 * 183.09977 * 12 11 10 36 36 H 1.09002 * 109.47249 * 63.08911 * 12 11 10 37 37 H 1.09000 * 109.47491 * 185.47736 * 14 13 12 38 38 H 1.08998 * 109.47160 * 305.47768 * 14 13 12 39 39 H 0.97002 * 119.99699 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47719 * 176.51387 * 23 13 12 41 41 H 1.09005 * 109.47722 * 56.50203 * 23 13 12 42 42 H 1.08999 * 109.54370 * 294.97206 * 24 10 7 43 43 H 1.08996 * 109.54611 * 55.25690 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9276 0.5545 -0.3481 6 6 4.0056 2.0109 1.3173 7 6 4.9878 2.8275 0.4545 8 1 5.9157 2.3007 0.2316 9 8 5.2049 4.1565 0.9326 10 6 3.9466 2.7404 -0.6676 11 6 2.9359 3.8861 -0.6553 12 6 1.8798 3.6318 -1.7356 13 7 2.5392 3.4868 -3.0395 14 6 1.5515 3.4254 -4.1250 15 6 0.8274 4.7436 -4.2206 16 1 1.0760 5.5466 -3.5423 17 6 -0.1529 4.9243 -5.1731 18 7 -0.4565 3.9460 -5.9979 19 14 -1.0508 6.5581 -5.2910 20 1 -0.5282 7.4859 -4.2560 21 1 -0.8349 7.1456 -6.6376 22 1 -2.5036 6.3414 -5.0727 23 6 3.4239 2.3152 -3.0661 24 6 4.5544 2.5063 -2.0499 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3013 2.6260 1.8773 31 1 4.4896 1.2528 1.9332 32 1 5.8607 4.2175 1.6406 33 1 2.4539 3.9368 0.3211 34 1 3.4479 4.8264 -0.8601 35 1 1.1861 4.4717 -1.7706 36 1 1.3330 2.7184 -1.5013 37 1 2.0595 3.2208 -5.0674 38 1 0.8341 2.6310 -3.9191 39 1 -1.1460 4.0733 -6.6683 40 1 3.8476 2.2024 -4.0640 41 1 2.8527 1.4226 -2.8108 42 1 5.1579 3.3684 -2.3336 43 1 5.1791 1.6134 -2.0271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152765590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:40 Heat of formation + Delta-G solvation = -74.479713 kcal Electronic energy + Delta-G solvation = -22347.914877 eV Core-core repulsion = 19200.670037 eV Total energy + Delta-G solvation = -3147.244841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61946 -37.08903 -36.76078 -34.52530 -32.62914 -30.92281 -30.31469 -30.05500 -26.50356 -24.16479 -23.57786 -22.84024 -22.50708 -21.42764 -19.95316 -18.22906 -17.43588 -16.37980 -16.16445 -15.79490 -15.38814 -14.58804 -14.22766 -14.03638 -13.84107 -13.56432 -13.23585 -13.13041 -12.64533 -12.46115 -12.25596 -12.15244 -11.90314 -11.66442 -11.31590 -11.26804 -11.04363 -10.87791 -10.66807 -10.57424 -10.48752 -10.41137 -10.04119 -9.80181 -9.74061 -9.38804 -9.04709 -8.99738 -8.33996 -6.97546 -5.93598 -3.93580 3.37140 3.44119 3.50356 3.67805 4.36285 4.49919 4.52266 4.60173 4.77650 4.82977 5.12396 5.14321 5.20471 5.34990 5.40196 5.42232 5.44154 5.55465 5.57534 5.74424 5.88500 5.92406 5.97714 6.03401 6.12689 6.21307 6.27435 6.34623 6.48315 6.57943 6.59999 6.69303 6.99861 7.13663 7.41028 7.46611 7.52630 7.67295 7.93368 8.24729 8.41341 8.72582 9.15372 9.70196 11.17486 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.005720 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.779878 B = 4893.736960 C = 5535.456847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.072 3.928 5 H 0.083 0.917 6 C -0.185 4.185 7 C 0.083 3.917 8 H 0.079 0.921 9 O -0.546 6.546 10 C -0.057 4.057 11 C -0.069 4.069 12 C 0.064 3.936 13 N -0.537 5.537 14 C 0.195 3.805 15 C -0.501 4.501 16 H 0.064 0.936 17 C 0.053 3.947 18 N -0.901 5.901 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.062 3.938 24 C -0.101 4.101 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.371 0.629 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.026 0.974 38 H -0.012 1.012 39 H 0.259 0.741 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.074 0.926 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -8.237 14.971 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.014 3.986 5 H 0.100 0.900 6 C -0.223 4.223 7 C 0.024 3.976 8 H 0.097 0.903 9 O -0.350 6.350 10 C -0.057 4.057 11 C -0.107 4.107 12 C -0.064 4.064 13 N -0.262 5.262 14 C 0.070 3.930 15 C -0.539 4.539 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.067 4.067 24 C -0.139 4.139 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.217 0.783 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.006 0.994 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.092 0.908 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.346 -7.570 14.285 18.674 hybrid contribution -0.420 -0.441 0.363 0.709 sum 8.926 -8.011 14.649 18.932 Atomic orbital electron populations 1.21737 0.93757 1.01903 1.03524 1.22468 0.95772 0.84483 0.99332 1.88079 1.19614 1.25340 1.94252 1.23391 0.82025 0.97373 0.95823 0.89955 1.24256 0.99924 1.00267 0.97823 1.23128 0.95812 0.83230 0.95423 0.90334 1.86618 1.64300 1.27060 1.57007 1.22050 0.94670 0.95543 0.93452 1.21030 0.95136 0.96040 0.98473 1.22018 0.95063 1.01269 0.88028 1.61912 1.22812 1.37198 1.04327 1.19658 0.88503 0.96532 0.88347 1.21245 1.17780 0.98728 1.16180 0.91825 1.24985 0.97168 0.96810 0.95775 1.69979 1.32231 1.31798 1.20127 0.86473 0.79305 0.83982 0.77874 1.19635 1.21105 1.21205 1.21909 0.94352 0.92589 0.97883 1.21567 0.97747 1.01014 0.93552 0.91502 0.92014 0.91308 0.93646 0.94044 0.88460 0.91675 0.78283 0.92282 0.91358 0.90572 0.94233 0.95548 0.99402 0.93154 0.91781 0.96370 0.90778 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 37.16 0.38 -1.45 16 2 C 0.06 0.70 6.50 37.16 0.24 0.94 16 3 O -0.35 -5.37 7.46 -35.23 -0.26 -5.64 16 4 C 0.07 0.96 3.58 -26.10 -0.09 0.86 16 5 H 0.08 0.96 7.77 -51.93 -0.40 0.56 16 6 C -0.18 -2.09 7.42 -25.68 -0.19 -2.28 16 7 C 0.08 0.98 4.67 -25.97 -0.12 0.86 16 8 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 9 O -0.55 -6.65 12.77 -35.23 -0.45 -7.10 16 10 C -0.06 -0.85 0.75 -154.37 -0.12 -0.96 16 11 C -0.07 -1.24 4.19 -26.74 -0.11 -1.35 16 12 C 0.06 1.37 5.17 -3.76 -0.02 1.35 16 13 N -0.54 -12.33 4.61 -235.93 -1.09 -13.42 16 14 C 0.19 5.32 4.73 -4.98 -0.02 5.30 16 15 C -0.50 -14.62 8.40 -34.44 -0.29 -14.91 16 16 H 0.06 1.86 7.11 -52.48 -0.37 1.49 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 19 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.06 1.18 5.41 -3.75 -0.02 1.16 16 24 C -0.10 -1.56 5.28 -26.73 -0.14 -1.70 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.10 1.23 7.64 -51.93 -0.40 0.83 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.37 2.65 9.12 45.56 0.42 3.07 16 33 H 0.06 1.03 7.31 -51.93 -0.38 0.65 16 34 H 0.07 1.32 8.01 -51.93 -0.42 0.91 16 35 H 0.08 1.80 6.64 -51.93 -0.34 1.45 16 36 H 0.04 0.87 6.03 -51.93 -0.31 0.55 16 37 H 0.03 0.77 7.96 -51.93 -0.41 0.35 16 38 H -0.01 -0.35 8.13 -51.93 -0.42 -0.77 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 41 H 0.02 0.35 8.07 -51.93 -0.42 -0.07 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.69 8.05 -51.93 -0.42 0.28 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -32.63 334.03 -8.46 -41.09 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.81 Total: 0.23 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.60 Total: -10.73 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.35 Total: -40.20 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.71 Total: -12.74 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.63 -8.46 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152765590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.390 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds