Wall clock time and date at job start Mon Mar 30 2020 01:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47636 * 2 1 4 4 C 1.42899 * 114.00397 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.86341 * 20.33329 * 4 3 2 6 6 C 1.53868 * 113.63657 * 249.06897 * 4 3 2 7 7 C 1.54140 * 87.05626 * 220.33526 * 6 4 3 8 8 H 1.09000 * 113.63366 * 270.59713 * 7 6 4 9 9 O 1.42895 * 113.71946 * 139.63862 * 7 6 4 10 10 C 1.53327 * 86.95370 * 25.11320 * 7 6 4 11 11 C 1.52788 * 113.62341 * 89.53094 * 10 7 6 12 12 C 1.53194 * 109.01738 * 184.88148 * 11 10 7 13 13 N 1.46831 * 109.45172 * 303.09665 * 12 11 10 14 14 C 1.46896 * 111.00254 * 187.76224 * 13 12 11 15 15 C 1.50699 * 109.47359 * 65.47948 * 14 13 12 16 16 H 1.08011 * 119.99614 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00545 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99298 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47396 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47320 * 120.00270 * 19 17 15 22 22 H 1.48504 * 109.47051 * 239.99904 * 19 17 15 23 23 C 1.46835 * 111.43738 * 63.48841 * 13 12 11 24 24 C 1.52800 * 113.61919 * 220.09089 * 10 7 6 25 25 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46865 * 300.00271 * 1 2 3 27 27 H 1.08999 * 109.47241 * 59.99669 * 1 2 3 28 28 H 1.09002 * 109.47364 * 239.99902 * 2 1 3 29 29 H 1.09008 * 109.47079 * 120.00242 * 2 1 3 30 30 H 1.08993 * 113.60025 * 334.85875 * 6 4 3 31 31 H 1.09003 * 113.59869 * 105.71859 * 6 4 3 32 32 H 0.96696 * 113.99947 * 82.59109 * 9 7 6 33 33 H 1.09004 * 109.54845 * 304.74337 * 11 10 7 34 34 H 1.09005 * 109.54791 * 65.02188 * 11 10 7 35 35 H 1.08996 * 109.47865 * 183.09977 * 12 11 10 36 36 H 1.09002 * 109.47249 * 63.08911 * 12 11 10 37 37 H 1.09000 * 109.47491 * 185.47736 * 14 13 12 38 38 H 1.08998 * 109.47160 * 305.47768 * 14 13 12 39 39 H 0.97002 * 119.99699 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47719 * 176.51387 * 23 13 12 41 41 H 1.09005 * 109.47722 * 56.50203 * 23 13 12 42 42 H 1.08999 * 109.54370 * 294.97206 * 24 10 7 43 43 H 1.08996 * 109.54611 * 55.25690 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9276 0.5545 -0.3481 6 6 4.0056 2.0109 1.3173 7 6 4.9878 2.8275 0.4545 8 1 5.9157 2.3007 0.2316 9 8 5.2049 4.1565 0.9326 10 6 3.9466 2.7404 -0.6676 11 6 2.9359 3.8861 -0.6553 12 6 1.8798 3.6318 -1.7356 13 7 2.5392 3.4868 -3.0395 14 6 1.5515 3.4254 -4.1250 15 6 0.8274 4.7436 -4.2206 16 1 1.0760 5.5466 -3.5423 17 6 -0.1529 4.9243 -5.1731 18 7 -0.4565 3.9460 -5.9979 19 14 -1.0508 6.5581 -5.2910 20 1 -0.5282 7.4859 -4.2560 21 1 -0.8349 7.1456 -6.6376 22 1 -2.5036 6.3414 -5.0727 23 6 3.4239 2.3152 -3.0661 24 6 4.5544 2.5063 -2.0499 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3013 2.6260 1.8773 31 1 4.4896 1.2528 1.9332 32 1 5.8607 4.2175 1.6406 33 1 2.4539 3.9368 0.3211 34 1 3.4479 4.8264 -0.8601 35 1 1.1861 4.4717 -1.7706 36 1 1.3330 2.7184 -1.5013 37 1 2.0595 3.2208 -5.0674 38 1 0.8341 2.6310 -3.9191 39 1 -1.1460 4.0733 -6.6683 40 1 3.8476 2.2024 -4.0640 41 1 2.8527 1.4226 -2.8108 42 1 5.1579 3.3684 -2.3336 43 1 5.1791 1.6134 -2.0271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152765590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:40 Heat of formation + Delta-G solvation = -98.982384 kcal Electronic energy + Delta-G solvation = -22348.977393 eV Core-core repulsion = 19200.670037 eV Total energy + Delta-G solvation = -3148.307356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73904 -38.47379 -37.95864 -35.71212 -34.69182 -32.18644 -31.70717 -31.53175 -28.48652 -25.41868 -24.88926 -24.31427 -23.61208 -23.10609 -21.42683 -19.39819 -18.52235 -18.35929 -17.37049 -17.11231 -16.64127 -16.31192 -15.78256 -15.36253 -15.20051 -14.93368 -14.82635 -14.27118 -14.07778 -13.91851 -13.57664 -13.40953 -13.27683 -13.14437 -12.95372 -12.69311 -12.48746 -12.40880 -12.26734 -12.08759 -11.94192 -11.86214 -11.64057 -11.35903 -11.18956 -10.91173 -10.62624 -10.50502 -10.13673 -8.89162 -8.21527 -6.31399 1.38149 1.38884 1.53331 2.39389 2.73052 3.09945 3.31546 3.45227 3.56874 3.67757 3.78956 3.94405 4.10289 4.17867 4.23661 4.34022 4.41835 4.46263 4.48781 4.60135 4.66420 4.76226 4.77143 4.84641 4.91303 4.98443 5.01007 5.01837 5.16288 5.17926 5.21362 5.25649 5.26411 5.36226 5.42669 5.58218 5.66818 6.07237 6.41391 6.44609 6.73714 6.85700 7.06036 7.38128 8.89904 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.005720 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.779878 B = 4893.736960 C = 5535.456847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.386 6.386 4 C 0.068 3.932 5 H 0.106 0.894 6 C -0.171 4.171 7 C 0.098 3.902 8 H 0.113 0.887 9 O -0.570 6.570 10 C -0.077 4.077 11 C -0.054 4.054 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.212 3.788 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.276 1.276 23 C 0.058 3.942 24 C -0.091 4.091 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.394 0.606 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.002 0.998 38 H -0.045 1.045 39 H 0.265 0.735 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.065 0.935 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 -8.771 16.805 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.306 6.306 4 C 0.010 3.990 5 H 0.123 0.877 6 C -0.209 4.209 7 C 0.039 3.961 8 H 0.130 0.870 9 O -0.378 6.378 10 C -0.078 4.078 11 C -0.092 4.092 12 C -0.056 4.056 13 N -0.270 5.270 14 C 0.085 3.915 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.070 4.070 24 C -0.128 4.128 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.020 0.980 38 H -0.027 1.027 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.084 0.916 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.022 -8.110 16.148 21.166 hybrid contribution -0.942 -0.310 -0.224 1.017 sum 10.080 -8.420 15.924 20.642 Atomic orbital electron populations 1.21753 0.94181 1.03036 1.01834 1.22606 0.95535 0.83650 1.00556 1.88041 1.21054 1.27008 1.94476 1.23595 0.81353 0.97245 0.96781 0.87659 1.24120 0.99226 1.00444 0.97071 1.23096 0.96272 0.83412 0.93302 0.86972 1.86561 1.65547 1.27444 1.58217 1.22154 0.95582 0.95453 0.94595 1.20781 0.94762 0.96902 0.96707 1.21912 0.95808 0.99402 0.88485 1.61866 1.21791 1.39536 1.03789 1.19300 0.88400 0.94874 0.88906 1.21483 1.18759 0.99228 1.16543 0.92468 1.25921 0.97793 1.00885 0.95068 1.70097 1.32797 1.34019 1.20626 0.85331 0.78033 0.78985 0.78266 1.19055 1.19959 1.20180 1.22037 0.94797 0.90839 0.99321 1.21533 0.96258 1.02555 0.92503 0.88989 0.91914 0.94688 0.93771 0.91208 0.90194 0.88413 0.75604 0.92051 0.93191 0.93979 0.95030 0.98009 1.02716 0.92652 0.92269 0.96704 0.91622 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 10.28 71.98 0.74 -2.88 16 2 C 0.05 1.24 6.50 71.98 0.47 1.71 16 3 O -0.39 -11.38 7.46 -148.98 -1.11 -12.49 16 4 C 0.07 1.62 3.58 31.01 0.11 1.73 16 5 H 0.11 2.01 7.77 -2.39 -0.02 1.99 16 6 C -0.17 -3.22 7.42 31.27 0.23 -2.99 16 7 C 0.10 1.94 4.67 31.09 0.15 2.08 16 8 H 0.11 1.53 8.10 -2.39 -0.02 1.51 16 9 O -0.57 -12.22 12.77 -148.98 -1.90 -14.12 16 10 C -0.08 -2.16 0.75 -52.09 -0.04 -2.20 16 11 C -0.05 -1.95 4.19 30.59 0.13 -1.82 16 12 C 0.07 3.23 5.17 86.38 0.45 3.68 16 13 N -0.54 -26.17 4.61 -900.35 -4.15 -30.32 16 14 C 0.21 12.27 4.73 85.56 0.40 12.67 16 15 C -0.52 -31.84 8.40 25.60 0.22 -31.62 16 16 H 0.06 3.49 7.11 -2.90 -0.02 3.47 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -58.69 13.29 21.45 0.28 -58.40 16 19 Si 0.97 46.65 29.54 68.60 2.03 48.67 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C 0.06 2.26 5.41 86.38 0.47 2.73 16 24 C -0.09 -2.64 5.28 30.60 0.16 -2.47 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 1.82 7.64 -2.39 -0.02 1.80 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.39 4.24 9.12 -74.06 -0.68 3.56 16 33 H 0.06 2.17 7.31 -2.38 -0.02 2.15 16 34 H 0.05 1.97 8.01 -2.38 -0.02 1.95 16 35 H 0.04 2.12 6.64 -2.39 -0.02 2.10 16 36 H 0.03 1.47 6.03 -2.39 -0.01 1.45 16 37 H 0.00 0.11 7.96 -2.39 -0.02 0.09 16 38 H -0.04 -2.83 8.13 -2.39 -0.02 -2.85 16 39 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.06 2.31 7.98 -2.39 -0.02 2.29 16 41 H 0.01 0.58 8.07 -2.38 -0.02 0.56 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 Total: -1.00 -74.36 334.03 -0.61 -74.96 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.30 Total: 10.57 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.94 Total: -18.87 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -3.86 Total: -88.72 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -3.01 Total: -26.61 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.36 -0.61 -74.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152765590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.019 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds