Wall clock time and date at job start Mon Mar 30 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46955 * 2 1 4 4 C 1.42899 * 114.00102 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.86257 * 338.24996 * 4 3 2 6 6 C 1.53855 * 113.63163 * 109.50535 * 4 3 2 7 7 C 1.53858 * 87.15859 * 139.62739 * 6 4 3 8 8 H 1.09000 * 113.63650 * 220.36967 * 7 6 4 9 9 O 1.42895 * 113.63724 * 89.49162 * 7 6 4 10 10 C 1.53337 * 86.95216 * 334.88551 * 7 6 4 11 11 C 1.52792 * 113.60986 * 139.91797 * 10 7 6 12 12 C 1.53217 * 109.00206 * 184.86807 * 11 10 7 13 13 N 1.46834 * 109.45207 * 303.08701 * 12 11 10 14 14 C 1.46897 * 111.00300 * 187.77276 * 13 12 11 15 15 C 1.50704 * 109.46581 * 300.09909 * 14 13 12 16 16 H 1.07997 * 120.00177 * 4.83730 * 15 14 13 17 17 C 1.37881 * 119.99790 * 184.83814 * 15 14 13 18 18 N 1.31515 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00024 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47088 * 59.99880 * 19 17 15 21 21 H 1.48498 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46828 * 299.99917 * 19 17 15 23 23 C 1.46832 * 111.42878 * 63.50232 * 13 12 11 24 24 C 1.52791 * 113.61446 * 270.46825 * 10 7 6 25 25 H 1.08995 * 109.47159 * 60.00082 * 1 2 3 26 26 H 1.09005 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46866 * 299.99754 * 1 2 3 28 28 H 1.09001 * 109.46866 * 240.00246 * 2 1 3 29 29 H 1.08995 * 109.47159 * 119.99918 * 2 1 3 30 30 H 1.09006 * 113.60264 * 254.19659 * 6 4 3 31 31 H 1.09001 * 113.60800 * 25.05645 * 6 4 3 32 32 H 0.96700 * 114.00219 * 79.50608 * 9 7 6 33 33 H 1.08998 * 109.55367 * 304.72427 * 11 10 7 34 34 H 1.09003 * 109.55183 * 65.01445 * 11 10 7 35 35 H 1.08993 * 109.47331 * 183.09287 * 12 11 10 36 36 H 1.08998 * 109.47844 * 63.07997 * 12 11 10 37 37 H 1.08991 * 109.47220 * 60.09600 * 14 13 12 38 38 H 1.08998 * 109.47321 * 180.10603 * 14 13 12 39 39 H 0.96993 * 120.00154 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47638 * 176.50358 * 23 13 12 41 41 H 1.09009 * 109.47719 * 56.49378 * 23 13 12 42 42 H 1.09001 * 109.54980 * 294.99339 * 24 10 7 43 43 H 1.09003 * 109.54925 * 55.17727 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9266 0.5638 0.3731 6 6 4.0091 1.9779 -1.3279 7 6 4.9875 2.8162 -0.4870 8 1 5.1519 3.8198 -0.8793 9 8 6.2048 2.1353 -0.1763 10 6 3.9445 2.7582 0.6354 11 6 4.5503 2.5615 2.0242 12 6 3.4183 2.3969 3.0436 13 7 2.5331 3.5669 2.9844 14 6 1.5438 3.5340 4.0698 15 6 0.7074 2.2862 3.9493 16 1 0.9419 1.5496 3.1952 17 6 -0.3572 2.0849 4.8021 18 7 -0.6425 2.9816 5.7208 19 14 -1.3935 0.5378 4.6533 20 1 -0.5348 -0.6553 4.8637 21 1 -2.4676 0.5611 5.6785 22 1 -2.0016 0.4776 3.2999 23 6 1.8755 3.6764 1.6761 24 6 2.9331 3.9026 0.5909 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.4961 1.2050 -1.9226 31 1 3.3058 2.5775 -1.9059 32 1 6.8474 2.1289 -0.8988 33 1 5.1756 1.6687 2.0264 34 1 5.1530 3.4312 2.2858 35 1 3.8406 2.3110 4.0447 36 1 2.8479 1.4976 2.8113 37 1 2.0583 3.5352 5.0306 38 1 0.8999 4.4109 4.0013 39 1 -1.3912 2.8399 6.3209 40 1 1.1812 4.5165 1.6876 41 1 1.3297 2.7567 1.4655 42 1 3.4442 4.8483 0.7712 43 1 2.4538 3.9279 -0.3878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152765679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:42 Heat of formation + Delta-G solvation = -74.335354 kcal Electronic energy + Delta-G solvation = -22800.896077 eV Core-core repulsion = 19653.657496 eV Total energy + Delta-G solvation = -3147.238581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59341 -36.94588 -36.86275 -34.42792 -32.53692 -30.74808 -30.24718 -29.95903 -26.23142 -24.30246 -23.72631 -22.66241 -22.29123 -21.59691 -19.80883 -18.18118 -17.28635 -16.40135 -16.18227 -15.56587 -15.20419 -14.62601 -14.43371 -13.96570 -13.78115 -13.41401 -13.13628 -12.87228 -12.81807 -12.39566 -12.13537 -11.96669 -11.70059 -11.57989 -11.46193 -11.01913 -11.00286 -10.85748 -10.74326 -10.47852 -10.44402 -10.17621 -9.91778 -9.78796 -9.62736 -9.56351 -9.26346 -8.90154 -8.34515 -6.95527 -5.93121 -4.01492 3.31309 3.36490 3.37970 3.93215 4.05241 4.46452 4.57497 4.72066 4.83868 5.12946 5.29455 5.32754 5.36908 5.37561 5.49278 5.51304 5.58858 5.64882 5.79188 5.84034 6.01118 6.01778 6.07454 6.17271 6.24102 6.34611 6.41289 6.45898 6.58900 6.60937 6.71538 6.84994 6.98802 7.25114 7.44895 7.56002 7.62200 7.64015 8.00397 8.24124 8.43234 8.51017 9.10250 9.64291 11.11382 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.007110 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.921416 B = 3936.938887 C = 4776.543798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.080 3.920 5 H 0.084 0.916 6 C -0.188 4.188 7 C 0.083 3.917 8 H 0.071 0.929 9 O -0.546 6.546 10 C -0.056 4.056 11 C -0.093 4.093 12 C 0.068 3.932 13 N -0.544 5.544 14 C 0.188 3.812 15 C -0.541 4.541 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.066 3.934 24 C -0.081 4.081 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.374 0.626 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.359 -3.035 -14.694 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.276 6.276 4 C 0.022 3.978 5 H 0.102 0.898 6 C -0.226 4.226 7 C 0.024 3.976 8 H 0.089 0.911 9 O -0.351 6.351 10 C -0.056 4.056 11 C -0.131 4.131 12 C -0.061 4.061 13 N -0.268 5.268 14 C 0.062 3.938 15 C -0.580 4.580 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.533 5.533 19 Si 0.712 3.288 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.062 4.062 24 C -0.119 4.119 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.221 0.779 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.077 -2.501 -13.894 16.784 hybrid contribution -0.770 -1.853 -0.674 2.117 sum 8.307 -4.354 -14.568 17.326 Atomic orbital electron populations 1.21757 0.93907 1.01821 1.03583 1.22419 0.95623 0.84488 0.99212 1.88039 1.19963 1.25402 1.94210 1.23587 0.81500 0.97738 0.95007 0.89847 1.24211 0.99672 1.00759 0.97992 1.22616 0.83917 0.94134 0.96947 0.91087 1.86504 1.27056 1.78662 1.42846 1.21981 0.93375 0.95591 0.94672 1.21411 0.97481 1.01404 0.92826 1.21817 0.93409 0.93345 0.97507 1.62334 1.21947 1.38622 1.03865 1.19714 0.88988 0.96287 0.88825 1.21778 1.13301 1.06174 1.16736 0.92351 1.24954 0.97306 0.96236 0.95338 1.69935 1.29206 1.34583 1.19586 0.86792 0.80156 0.84091 0.77797 1.20405 1.21327 1.20172 1.21870 0.94321 1.01612 0.88412 1.21262 0.95848 0.95586 0.99213 0.92196 0.91738 0.90947 0.94315 0.93571 0.91408 0.88749 0.77898 0.92027 0.91706 0.92166 0.94726 0.95693 0.95031 0.92932 0.92397 0.92055 0.92057 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 37.16 0.38 -1.87 16 2 C 0.06 0.88 6.51 37.16 0.24 1.12 16 3 O -0.36 -5.95 7.47 -35.23 -0.26 -6.21 16 4 C 0.08 1.19 3.52 -26.11 -0.09 1.10 16 5 H 0.08 1.26 7.79 -51.93 -0.40 0.86 16 6 C -0.19 -2.24 7.40 -25.84 -0.19 -2.43 16 7 C 0.08 1.01 4.71 -26.11 -0.12 0.89 16 8 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 9 O -0.55 -6.28 12.49 -35.23 -0.44 -6.72 16 10 C -0.06 -0.86 0.75 -154.37 -0.12 -0.97 16 11 C -0.09 -1.60 4.84 -26.73 -0.13 -1.73 16 12 C 0.07 1.41 4.95 -3.75 -0.02 1.39 16 13 N -0.54 -12.21 4.81 -235.92 -1.14 -13.35 16 14 C 0.19 5.00 5.10 -4.98 -0.03 4.97 16 15 C -0.54 -15.12 7.77 -34.44 -0.27 -15.39 16 16 H 0.06 1.63 5.89 -52.49 -0.31 1.32 16 17 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 19 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.07 1.36 4.95 -3.75 -0.02 1.35 16 24 C -0.08 -1.34 4.83 -26.73 -0.13 -1.47 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.11 7.64 -51.93 -0.40 0.71 16 32 H 0.37 2.48 9.12 45.56 0.42 2.90 16 33 H 0.06 1.02 7.56 -51.93 -0.39 0.62 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.03 0.78 6.58 -51.93 -0.34 0.44 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 41 H 0.06 1.38 5.00 -51.92 -0.26 1.13 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.92 7.31 -51.93 -0.38 0.54 16 LS Contribution 330.74 15.07 4.98 4.98 Total: -1.00 -30.84 330.74 -8.41 -39.25 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.69 Total: 2.75 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.58 Total: -11.33 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.40 Total: -39.41 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.70 Total: -12.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.84 -8.41 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152765679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.084 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds