Wall clock time and date at job start Mon Mar 30 2020 01:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46955 * 2 1 4 4 C 1.42899 * 114.00102 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.86257 * 338.24996 * 4 3 2 6 6 C 1.53855 * 113.63163 * 109.50535 * 4 3 2 7 7 C 1.53858 * 87.15859 * 139.62739 * 6 4 3 8 8 H 1.09000 * 113.63650 * 220.36967 * 7 6 4 9 9 O 1.42895 * 113.63724 * 89.49162 * 7 6 4 10 10 C 1.53337 * 86.95216 * 334.88551 * 7 6 4 11 11 C 1.52792 * 113.60986 * 139.91797 * 10 7 6 12 12 C 1.53217 * 109.00206 * 184.86807 * 11 10 7 13 13 N 1.46834 * 109.45207 * 303.08701 * 12 11 10 14 14 C 1.46897 * 111.00300 * 187.77276 * 13 12 11 15 15 C 1.50704 * 109.46581 * 300.09909 * 14 13 12 16 16 H 1.07997 * 120.00177 * 4.83730 * 15 14 13 17 17 C 1.37881 * 119.99790 * 184.83814 * 15 14 13 18 18 N 1.31515 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00024 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47088 * 59.99880 * 19 17 15 21 21 H 1.48498 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46828 * 299.99917 * 19 17 15 23 23 C 1.46832 * 111.42878 * 63.50232 * 13 12 11 24 24 C 1.52791 * 113.61446 * 270.46825 * 10 7 6 25 25 H 1.08995 * 109.47159 * 60.00082 * 1 2 3 26 26 H 1.09005 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46866 * 299.99754 * 1 2 3 28 28 H 1.09001 * 109.46866 * 240.00246 * 2 1 3 29 29 H 1.08995 * 109.47159 * 119.99918 * 2 1 3 30 30 H 1.09006 * 113.60264 * 254.19659 * 6 4 3 31 31 H 1.09001 * 113.60800 * 25.05645 * 6 4 3 32 32 H 0.96700 * 114.00219 * 79.50608 * 9 7 6 33 33 H 1.08998 * 109.55367 * 304.72427 * 11 10 7 34 34 H 1.09003 * 109.55183 * 65.01445 * 11 10 7 35 35 H 1.08993 * 109.47331 * 183.09287 * 12 11 10 36 36 H 1.08998 * 109.47844 * 63.07997 * 12 11 10 37 37 H 1.08991 * 109.47220 * 60.09600 * 14 13 12 38 38 H 1.08998 * 109.47321 * 180.10603 * 14 13 12 39 39 H 0.96993 * 120.00154 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47638 * 176.50358 * 23 13 12 41 41 H 1.09009 * 109.47719 * 56.49378 * 23 13 12 42 42 H 1.09001 * 109.54980 * 294.99339 * 24 10 7 43 43 H 1.09003 * 109.54925 * 55.17727 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9266 0.5638 0.3731 6 6 4.0091 1.9779 -1.3279 7 6 4.9875 2.8162 -0.4870 8 1 5.1519 3.8198 -0.8793 9 8 6.2048 2.1353 -0.1763 10 6 3.9445 2.7582 0.6354 11 6 4.5503 2.5615 2.0242 12 6 3.4183 2.3969 3.0436 13 7 2.5331 3.5669 2.9844 14 6 1.5438 3.5340 4.0698 15 6 0.7074 2.2862 3.9493 16 1 0.9419 1.5496 3.1952 17 6 -0.3572 2.0849 4.8021 18 7 -0.6425 2.9816 5.7208 19 14 -1.3935 0.5378 4.6533 20 1 -0.5348 -0.6553 4.8637 21 1 -2.4676 0.5611 5.6785 22 1 -2.0016 0.4776 3.2999 23 6 1.8755 3.6764 1.6761 24 6 2.9331 3.9026 0.5909 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.4961 1.2050 -1.9226 31 1 3.3058 2.5775 -1.9059 32 1 6.8474 2.1289 -0.8988 33 1 5.1756 1.6687 2.0264 34 1 5.1530 3.4312 2.2858 35 1 3.8406 2.3110 4.0447 36 1 2.8479 1.4976 2.8113 37 1 2.0583 3.5352 5.0306 38 1 0.8999 4.4109 4.0013 39 1 -1.3912 2.8399 6.3209 40 1 1.1812 4.5165 1.6876 41 1 1.3297 2.7567 1.4655 42 1 3.4442 4.8483 0.7712 43 1 2.4538 3.9279 -0.3878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152765679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:41 Heat of formation + Delta-G solvation = -97.074238 kcal Electronic energy + Delta-G solvation = -22801.882109 eV Core-core repulsion = 19653.657496 eV Total energy + Delta-G solvation = -3148.224613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76888 -38.53641 -37.98352 -35.66105 -34.54032 -32.13157 -31.69179 -31.42743 -28.20011 -25.62961 -25.15021 -24.09306 -23.62226 -23.17732 -21.35750 -19.51583 -18.38938 -18.26316 -17.30178 -17.05198 -16.68601 -16.21440 -15.81026 -15.53465 -15.35171 -14.82859 -14.55738 -14.23911 -14.17558 -13.78078 -13.66136 -13.37231 -13.24413 -12.98406 -12.87818 -12.69992 -12.54902 -12.38477 -12.24353 -12.10075 -11.90165 -11.88209 -11.68021 -11.54707 -11.19582 -10.75649 -10.59638 -10.56785 -10.09876 -8.91243 -8.12581 -6.32607 1.32754 1.35004 1.42889 2.36428 2.82354 3.10102 3.12828 3.42269 3.57976 3.71813 3.81282 4.04813 4.12501 4.18121 4.29059 4.38687 4.45723 4.46488 4.53653 4.68480 4.77860 4.80208 4.82068 4.93542 4.94077 5.00626 5.01608 5.05764 5.20961 5.21415 5.28305 5.30566 5.35695 5.37702 5.45752 5.60888 5.76826 6.10912 6.33177 6.44309 6.65378 6.89020 7.00722 7.38104 8.88558 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.007110 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.921416 B = 3936.938887 C = 4776.543798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.068 3.932 5 H 0.078 0.922 6 C -0.170 4.170 7 C 0.102 3.898 8 H 0.093 0.907 9 O -0.561 6.561 10 C -0.072 4.072 11 C -0.081 4.081 12 C 0.073 3.927 13 N -0.542 5.542 14 C 0.200 3.800 15 C -0.547 4.547 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.929 5.929 19 Si 0.950 3.050 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.266 1.266 23 C 0.068 3.932 24 C -0.069 4.069 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.012 0.988 37 H -0.002 1.002 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 -4.115 -17.430 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C 0.011 3.989 5 H 0.096 0.904 6 C -0.208 4.208 7 C 0.043 3.957 8 H 0.110 0.890 9 O -0.369 6.369 10 C -0.073 4.073 11 C -0.118 4.118 12 C -0.056 4.056 13 N -0.265 5.265 14 C 0.073 3.927 15 C -0.586 4.586 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.569 5.569 19 Si 0.775 3.225 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.060 4.060 24 C -0.107 4.107 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.030 0.970 37 H 0.016 0.984 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.237 -3.583 -16.662 19.881 hybrid contribution -1.085 -1.505 0.223 1.868 sum 9.152 -5.088 -16.440 19.492 Atomic orbital electron populations 1.21754 0.94092 1.02839 1.02079 1.22501 0.95523 0.84066 0.99866 1.88005 1.21137 1.26359 1.94479 1.23760 0.80760 0.97178 0.97241 0.90415 1.24101 0.99145 1.00961 0.96568 1.22386 0.83656 0.95405 0.94257 0.88963 1.86444 1.27267 1.78577 1.44612 1.22070 0.94877 0.95681 0.94651 1.21281 0.95822 1.01809 0.92926 1.21801 0.93982 0.91574 0.98235 1.62295 1.20959 1.39507 1.03785 1.19384 0.89125 0.94858 0.89303 1.21928 1.13650 1.06385 1.16594 0.92655 1.25799 0.98583 0.99545 0.94864 1.70062 1.29893 1.36560 1.20382 0.85728 0.78493 0.80015 0.78271 1.19610 1.20627 1.19072 1.21872 0.95581 0.99946 0.88642 1.21124 0.94946 0.96528 0.98094 0.91106 0.89513 0.94868 0.91368 0.95049 0.89337 0.88154 0.75089 0.91140 0.91597 0.93630 0.96952 0.98381 0.97826 0.92709 0.93966 0.94075 0.91248 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 10.28 71.98 0.74 -3.55 16 2 C 0.06 1.62 6.51 71.98 0.47 2.09 16 3 O -0.38 -12.26 7.47 -148.98 -1.11 -13.37 16 4 C 0.07 1.89 3.52 31.00 0.11 2.00 16 5 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 6 C -0.17 -3.34 7.40 31.17 0.23 -3.11 16 7 C 0.10 2.07 4.71 31.00 0.15 2.22 16 8 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 9 O -0.56 -10.61 12.49 -148.98 -1.86 -12.47 16 10 C -0.07 -2.08 0.75 -52.09 -0.04 -2.11 16 11 C -0.08 -2.68 4.84 30.60 0.15 -2.53 16 12 C 0.07 3.10 4.95 86.39 0.43 3.53 16 13 N -0.54 -25.25 4.81 -900.31 -4.33 -29.58 16 14 C 0.20 11.27 5.10 85.56 0.44 11.71 16 15 C -0.55 -31.81 7.77 25.60 0.20 -31.61 16 16 H 0.06 3.21 5.89 -2.91 -0.02 3.19 16 17 C 0.01 0.64 5.46 84.66 0.46 1.10 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 19 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C 0.07 2.85 4.95 86.38 0.43 3.28 16 24 C -0.07 -2.18 4.83 30.59 0.15 -2.03 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.10 1.91 7.64 -2.39 -0.02 1.89 16 32 H 0.40 3.42 9.12 -74.06 -0.68 2.75 16 33 H 0.07 2.23 7.56 -2.39 -0.02 2.21 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.01 0.58 6.58 -2.39 -0.02 0.56 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.00 0.22 8.06 -2.39 -0.02 0.20 16 39 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.04 1.86 8.05 -2.39 -0.02 1.84 16 41 H 0.04 1.91 5.00 -2.38 -0.01 1.90 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.22 7.31 -2.39 -0.02 2.20 16 Total: -1.00 -69.06 330.74 -0.78 -69.84 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.31 Total: 14.32 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 3.90 Total: -19.02 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.05 Total: -86.65 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -2.97 Total: -25.83 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.06 -0.78 -69.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152765679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.233 kcal (2) G-P(sol) polarization free energy of solvation -69.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds