Wall clock time and date at job start Mon Mar 30 2020 01:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47021 * 2 1 4 4 C 1.42895 * 114.00164 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.86654 * 18.73857 * 4 3 2 6 6 C 1.53859 * 113.63234 * 247.37037 * 4 3 2 7 7 C 1.53864 * 87.15497 * 270.59596 * 6 4 3 8 8 H 1.08996 * 113.71976 * 89.41712 * 7 6 4 9 9 O 1.42905 * 113.63576 * 220.37805 * 7 6 4 10 10 C 1.53330 * 113.63758 * 150.00057 * 4 3 2 11 11 C 1.52785 * 113.62063 * 204.04622 * 10 4 3 12 12 C 1.53199 * 109.01033 * 184.88049 * 11 10 4 13 13 N 1.46827 * 109.45137 * 303.09525 * 12 11 10 14 14 C 1.46901 * 111.00152 * 187.76769 * 13 12 11 15 15 C 1.50703 * 109.47317 * 65.47528 * 14 13 12 16 16 H 1.07994 * 120.00071 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00065 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99728 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00255 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46641 * 59.99822 * 19 17 15 21 21 H 1.48492 * 109.47210 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46689 * 300.00125 * 19 17 15 23 23 C 1.46838 * 111.44043 * 63.49047 * 13 12 11 24 24 C 1.52791 * 113.61622 * 334.60491 * 10 4 3 25 25 H 1.08995 * 109.47164 * 60.00531 * 1 2 3 26 26 H 1.09011 * 109.46574 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47237 * 299.99540 * 1 2 3 28 28 H 1.08996 * 109.46776 * 240.00218 * 2 1 3 29 29 H 1.09004 * 109.47276 * 119.99709 * 2 1 3 30 30 H 1.08991 * 113.60134 * 156.02724 * 6 4 3 31 31 H 1.09002 * 113.59912 * 25.15990 * 6 4 3 32 32 H 0.96696 * 114.00036 * 277.35741 * 9 7 6 33 33 H 1.09001 * 109.54195 * 304.73904 * 11 10 4 34 34 H 1.08997 * 109.54754 * 65.02303 * 11 10 4 35 35 H 1.09004 * 109.47702 * 183.09912 * 12 11 10 36 36 H 1.09008 * 109.47994 * 63.08752 * 12 11 10 37 37 H 1.09003 * 109.47268 * 185.47644 * 14 13 12 38 38 H 1.09000 * 109.46622 * 305.47503 * 14 13 12 39 39 H 0.97001 * 119.99645 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47193 * 176.51120 * 23 13 12 41 41 H 1.09001 * 109.47769 * 56.50306 * 23 13 12 42 42 H 1.09002 * 109.54943 * 294.97531 * 24 10 4 43 43 H 1.09007 * 109.55020 * 55.25417 * 24 10 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9281 0.5456 -0.3236 6 6 4.0034 2.0494 1.3003 7 6 3.8479 3.4355 0.6506 8 1 2.8773 3.8977 0.8307 9 8 4.9406 4.3178 0.9146 10 6 3.9473 2.7216 -0.7029 11 6 5.3784 2.5909 -1.2217 12 6 5.8281 3.9403 -1.7908 13 7 4.8932 4.3641 -2.8407 14 6 5.3892 5.5591 -3.5363 15 6 6.6537 5.2179 -4.2818 16 1 7.0491 4.2137 -4.2431 17 6 7.3059 6.1878 -5.0132 18 7 6.8246 7.4109 -5.0599 19 14 8.8728 5.7647 -5.9379 20 1 8.5889 4.6971 -6.9303 21 1 9.3749 6.9731 -6.6399 22 1 9.9005 5.2877 -4.9779 23 6 3.5465 4.5904 -2.3009 24 6 2.9872 3.2722 -1.7563 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0398 1.7689 1.4873 31 1 3.3602 1.8993 2.1675 32 1 4.8833 4.7708 1.7669 33 1 6.0380 2.3022 -0.4032 34 1 5.4146 1.8343 -2.0054 35 1 6.8282 3.8416 -2.2130 36 1 5.8416 4.6844 -0.9943 37 1 4.6349 5.9086 -4.2413 38 1 5.5970 6.3432 -2.8082 39 1 7.2832 8.0932 -5.5748 40 1 2.8956 4.9621 -3.0922 41 1 3.5960 5.3241 -1.4963 42 1 2.8880 2.5541 -2.5703 43 1 2.0115 3.4493 -1.3035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152765777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:44 Heat of formation + Delta-G solvation = -73.425826 kcal Electronic energy + Delta-G solvation = -21983.485881 eV Core-core repulsion = 18836.286740 eV Total energy + Delta-G solvation = -3147.199141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65157 -37.49768 -36.35929 -34.50174 -32.65055 -31.08213 -30.40968 -29.90732 -26.48881 -24.32272 -23.65067 -23.09324 -22.40935 -21.40246 -19.96511 -18.10946 -17.41899 -16.44690 -16.12106 -15.78088 -15.63048 -14.62212 -14.17306 -14.09074 -13.81034 -13.64307 -13.39044 -13.07764 -12.79791 -12.56675 -12.36304 -12.05908 -11.91770 -11.66736 -11.45360 -11.32094 -11.15447 -10.97771 -10.75337 -10.54001 -10.44872 -10.28308 -10.03246 -9.76836 -9.65341 -9.50565 -9.15421 -8.99376 -8.33477 -6.97686 -5.93173 -3.93768 3.39254 3.42588 3.45319 3.45962 4.32331 4.50305 4.56962 4.59109 4.80068 4.90761 4.99251 5.09939 5.18927 5.23310 5.29361 5.42328 5.46075 5.50336 5.58366 5.68695 5.75590 5.89545 5.92450 5.95896 6.03625 6.13413 6.27933 6.32632 6.47240 6.52146 6.61876 6.72118 6.93198 7.07354 7.19561 7.47758 7.53819 7.85069 7.92247 8.25244 8.41376 8.72802 9.14287 9.69751 11.17791 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.004375 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.743214 B = 6398.584724 C = 6615.789705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.071 3.929 5 H 0.077 0.923 6 C -0.187 4.187 7 C 0.092 3.908 8 H 0.079 0.921 9 O -0.545 6.545 10 C -0.059 4.059 11 C -0.081 4.081 12 C 0.068 3.932 13 N -0.539 5.539 14 C 0.194 3.806 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.058 3.942 24 C -0.090 4.090 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.367 0.633 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.027 0.973 38 H -0.011 1.011 39 H 0.260 0.740 40 H 0.063 0.937 41 H 0.021 0.979 42 H 0.067 0.933 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -13.106 13.936 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.012 3.988 5 H 0.095 0.905 6 C -0.225 4.225 7 C 0.033 3.967 8 H 0.097 0.903 9 O -0.349 6.349 10 C -0.060 4.060 11 C -0.119 4.119 12 C -0.060 4.060 13 N -0.264 5.264 14 C 0.069 3.931 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.070 4.070 24 C -0.128 4.128 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.214 0.786 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.007 0.993 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.662 -13.349 12.916 20.937 hybrid contribution 0.800 0.468 0.660 1.138 sum -8.862 -12.881 13.576 20.706 Atomic orbital electron populations 1.21739 0.93839 1.02074 1.03159 1.22508 0.95443 0.84093 0.99947 1.87877 1.19774 1.25984 1.94525 1.22908 0.81268 0.98140 0.96440 0.90460 1.24171 1.01770 0.98704 0.97810 1.23316 0.89663 0.87687 0.96038 0.90294 1.86696 1.45939 1.61167 1.41096 1.22053 0.97398 0.92781 0.93722 1.21260 0.92061 0.99478 0.99051 1.21924 0.96883 0.94267 0.92936 1.61929 1.00497 1.37607 1.26344 1.19659 0.95406 0.85431 0.92580 1.21157 1.07893 0.96231 1.28922 0.91998 1.24990 0.97870 0.94970 0.96864 1.69964 1.40084 1.02048 1.41951 0.86581 0.83398 0.77563 0.79977 1.20231 1.21437 1.20325 1.21974 0.92623 0.95091 0.97358 1.21347 0.96698 0.97665 0.97077 0.91673 0.91281 0.92020 0.93248 0.93685 0.88718 0.91214 0.78646 0.92168 0.91831 0.90496 0.93868 0.95496 0.99310 0.93007 0.91898 0.96102 0.91432 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.54 6.50 37.16 0.24 0.78 16 3 O -0.36 -4.46 9.16 -35.23 -0.32 -4.78 16 4 C 0.07 0.88 3.82 -26.11 -0.10 0.78 16 5 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 6 C -0.19 -2.12 7.40 -25.83 -0.19 -2.31 16 7 C 0.09 1.24 4.44 -26.10 -0.12 1.12 16 8 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 9 O -0.54 -7.72 10.78 -35.23 -0.38 -8.10 16 10 C -0.06 -0.88 0.75 -154.37 -0.12 -1.00 16 11 C -0.08 -1.35 4.83 -26.74 -0.13 -1.48 16 12 C 0.07 1.43 5.17 -3.76 -0.02 1.41 16 13 N -0.54 -12.39 4.61 -235.92 -1.09 -13.47 16 14 C 0.19 5.35 4.73 -4.97 -0.02 5.33 16 15 C -0.50 -14.67 8.40 -34.44 -0.29 -14.96 16 16 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 19 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.06 1.15 5.41 -3.75 -0.02 1.13 16 24 C -0.09 -1.47 4.83 -26.73 -0.13 -1.60 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 1.05 7.64 -51.93 -0.40 0.65 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.37 3.54 9.12 45.56 0.42 3.96 16 33 H 0.06 0.92 7.31 -51.93 -0.38 0.54 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.76 6.64 -51.93 -0.34 1.42 16 36 H 0.04 0.95 6.03 -51.92 -0.31 0.64 16 37 H 0.03 0.79 7.96 -51.93 -0.41 0.37 16 38 H -0.01 -0.32 8.13 -51.93 -0.42 -0.75 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 41 H 0.02 0.42 8.07 -51.93 -0.42 0.01 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.97 7.55 -51.92 -0.39 0.58 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -32.22 333.53 -8.45 -40.67 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.79 Total: 0.46 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.61 Total: -10.15 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.35 Total: -40.33 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.70 Total: -12.88 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.22 -8.45 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152765777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.756 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds