Wall clock time and date at job start Mon Mar 30 2020 01:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47021 * 2 1 4 4 C 1.42895 * 114.00164 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.86654 * 18.73857 * 4 3 2 6 6 C 1.53859 * 113.63234 * 247.37037 * 4 3 2 7 7 C 1.53864 * 87.15497 * 270.59596 * 6 4 3 8 8 H 1.08996 * 113.71976 * 89.41712 * 7 6 4 9 9 O 1.42905 * 113.63576 * 220.37805 * 7 6 4 10 10 C 1.53330 * 113.63758 * 150.00057 * 4 3 2 11 11 C 1.52785 * 113.62063 * 204.04622 * 10 4 3 12 12 C 1.53199 * 109.01033 * 184.88049 * 11 10 4 13 13 N 1.46827 * 109.45137 * 303.09525 * 12 11 10 14 14 C 1.46901 * 111.00152 * 187.76769 * 13 12 11 15 15 C 1.50703 * 109.47317 * 65.47528 * 14 13 12 16 16 H 1.07994 * 120.00071 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00065 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99728 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00255 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46641 * 59.99822 * 19 17 15 21 21 H 1.48492 * 109.47210 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46689 * 300.00125 * 19 17 15 23 23 C 1.46838 * 111.44043 * 63.49047 * 13 12 11 24 24 C 1.52791 * 113.61622 * 334.60491 * 10 4 3 25 25 H 1.08995 * 109.47164 * 60.00531 * 1 2 3 26 26 H 1.09011 * 109.46574 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47237 * 299.99540 * 1 2 3 28 28 H 1.08996 * 109.46776 * 240.00218 * 2 1 3 29 29 H 1.09004 * 109.47276 * 119.99709 * 2 1 3 30 30 H 1.08991 * 113.60134 * 156.02724 * 6 4 3 31 31 H 1.09002 * 113.59912 * 25.15990 * 6 4 3 32 32 H 0.96696 * 114.00036 * 277.35741 * 9 7 6 33 33 H 1.09001 * 109.54195 * 304.73904 * 11 10 4 34 34 H 1.08997 * 109.54754 * 65.02303 * 11 10 4 35 35 H 1.09004 * 109.47702 * 183.09912 * 12 11 10 36 36 H 1.09008 * 109.47994 * 63.08752 * 12 11 10 37 37 H 1.09003 * 109.47268 * 185.47644 * 14 13 12 38 38 H 1.09000 * 109.46622 * 305.47503 * 14 13 12 39 39 H 0.97001 * 119.99645 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47193 * 176.51120 * 23 13 12 41 41 H 1.09001 * 109.47769 * 56.50306 * 23 13 12 42 42 H 1.09002 * 109.54943 * 294.97531 * 24 10 4 43 43 H 1.09007 * 109.55020 * 55.25417 * 24 10 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9281 0.5456 -0.3236 6 6 4.0034 2.0494 1.3003 7 6 3.8479 3.4355 0.6506 8 1 2.8773 3.8977 0.8307 9 8 4.9406 4.3178 0.9146 10 6 3.9473 2.7216 -0.7029 11 6 5.3784 2.5909 -1.2217 12 6 5.8281 3.9403 -1.7908 13 7 4.8932 4.3641 -2.8407 14 6 5.3892 5.5591 -3.5363 15 6 6.6537 5.2179 -4.2818 16 1 7.0491 4.2137 -4.2431 17 6 7.3059 6.1878 -5.0132 18 7 6.8246 7.4109 -5.0599 19 14 8.8728 5.7647 -5.9379 20 1 8.5889 4.6971 -6.9303 21 1 9.3749 6.9731 -6.6399 22 1 9.9005 5.2877 -4.9779 23 6 3.5465 4.5904 -2.3009 24 6 2.9872 3.2722 -1.7563 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0398 1.7689 1.4873 31 1 3.3602 1.8993 2.1675 32 1 4.8833 4.7708 1.7669 33 1 6.0380 2.3022 -0.4032 34 1 5.4146 1.8343 -2.0054 35 1 6.8282 3.8416 -2.2130 36 1 5.8416 4.6844 -0.9943 37 1 4.6349 5.9086 -4.2413 38 1 5.5970 6.3432 -2.8082 39 1 7.2832 8.0932 -5.5748 40 1 2.8956 4.9621 -3.0922 41 1 3.5960 5.3241 -1.4963 42 1 2.8880 2.5541 -2.5703 43 1 2.0115 3.4493 -1.3035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152765777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:43 Heat of formation + Delta-G solvation = -97.069921 kcal Electronic energy + Delta-G solvation = -21984.511166 eV Core-core repulsion = 18836.286740 eV Total energy + Delta-G solvation = -3148.224426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77951 -38.73756 -37.66409 -35.70429 -34.70985 -32.14505 -31.91101 -31.20626 -28.47884 -25.48416 -25.08852 -24.31533 -23.48085 -23.10879 -21.44130 -19.32472 -18.49805 -18.41229 -17.39457 -17.04100 -16.51547 -16.45774 -15.79373 -15.39639 -15.08468 -15.00346 -14.80402 -14.30713 -14.11191 -14.01102 -13.49714 -13.43274 -13.17532 -13.11781 -12.83509 -12.64081 -12.45744 -12.39956 -12.34905 -12.11654 -11.97767 -11.86525 -11.60783 -11.37757 -11.07089 -10.93096 -10.59663 -10.47549 -10.22348 -8.90919 -8.19515 -6.30230 1.40165 1.44597 1.52424 2.40967 2.59190 3.11970 3.28538 3.40449 3.59337 3.61983 3.79554 4.02774 4.09047 4.25263 4.27008 4.37837 4.46210 4.46843 4.56075 4.57727 4.73092 4.79300 4.79772 4.83959 4.91233 4.97865 5.02517 5.09267 5.15716 5.18684 5.21779 5.23624 5.32000 5.33281 5.43884 5.56317 5.67130 6.07647 6.35721 6.42189 6.72022 6.86630 7.00085 7.39362 8.91794 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.004375 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.743214 B = 6398.584724 C = 6615.789705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.379 6.379 4 C 0.082 3.918 5 H 0.090 0.910 6 C -0.168 4.168 7 C 0.090 3.910 8 H 0.080 0.920 9 O -0.568 6.568 10 C -0.075 4.075 11 C -0.069 4.069 12 C 0.071 3.929 13 N -0.542 5.542 14 C 0.210 3.790 15 C -0.523 4.523 16 H 0.063 0.937 17 C -0.001 4.001 18 N -0.937 5.937 19 Si 0.973 3.027 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.058 3.942 24 C -0.077 4.077 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.386 0.614 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.032 0.968 37 H -0.001 1.001 38 H -0.046 1.046 39 H 0.265 0.735 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.062 0.938 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 -15.446 15.024 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.298 6.298 4 C 0.024 3.976 5 H 0.108 0.892 6 C -0.206 4.206 7 C 0.031 3.969 8 H 0.098 0.902 9 O -0.376 6.376 10 C -0.075 4.075 11 C -0.107 4.107 12 C -0.057 4.057 13 N -0.267 5.267 14 C 0.083 3.917 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.070 4.070 24 C -0.115 4.115 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.235 0.765 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.017 0.983 38 H -0.028 1.028 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.534 -15.708 14.034 23.121 hybrid contribution 0.681 1.250 0.338 1.463 sum -8.853 -14.458 14.372 22.225 Atomic orbital electron populations 1.21756 0.92967 1.03280 1.02609 1.22727 0.96188 0.82886 1.00844 1.87856 1.19470 1.27894 1.94580 1.22766 0.81728 0.97100 0.96046 0.89173 1.24045 1.02429 0.96324 0.97803 1.23340 0.89521 0.88731 0.95316 0.90197 1.86632 1.46373 1.61773 1.42797 1.22115 0.95819 0.95500 0.94094 1.21113 0.93815 0.96280 0.99446 1.21889 0.95425 0.96607 0.91757 1.61901 1.02148 1.35009 1.27669 1.19323 0.94543 0.86294 0.91534 1.21432 1.08662 0.96469 1.29546 0.91924 1.25976 1.01632 0.94631 0.97605 1.70104 1.41790 1.03198 1.42660 0.85390 0.78648 0.77669 0.78633 1.19164 1.20683 1.19149 1.22047 0.90891 0.97309 0.96781 1.21233 0.97620 0.95190 0.97462 0.92687 0.89234 0.92089 0.92966 0.92129 0.88007 0.89584 0.76501 0.90218 0.91882 0.93037 0.95034 0.98286 1.02791 0.92678 0.92753 0.96966 0.91894 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.79 6.50 71.98 0.47 1.26 16 3 O -0.38 -8.25 9.16 -148.98 -1.36 -9.61 16 4 C 0.08 1.78 3.82 30.99 0.12 1.90 16 5 H 0.09 1.74 7.82 -2.39 -0.02 1.73 16 6 C -0.17 -3.26 7.40 31.17 0.23 -3.03 16 7 C 0.09 2.24 4.44 31.00 0.14 2.38 16 8 H 0.08 1.97 8.03 -2.39 -0.02 1.96 16 9 O -0.57 -15.51 10.78 -148.98 -1.61 -17.11 16 10 C -0.07 -2.11 0.75 -52.09 -0.04 -2.15 16 11 C -0.07 -2.23 4.83 30.59 0.15 -2.08 16 12 C 0.07 3.06 5.17 86.38 0.45 3.50 16 13 N -0.54 -25.86 4.61 -900.31 -4.15 -30.00 16 14 C 0.21 12.16 4.73 85.56 0.40 12.56 16 15 C -0.52 -31.39 8.40 25.60 0.22 -31.17 16 16 H 0.06 3.67 7.12 -2.91 -0.02 3.65 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 19 Si 0.97 45.84 29.54 68.60 2.03 47.86 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.06 2.37 5.41 86.38 0.47 2.84 16 24 C -0.08 -2.48 4.83 30.59 0.15 -2.33 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 1.87 7.64 -2.39 -0.02 1.85 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.39 6.96 9.12 -74.06 -0.68 6.29 16 33 H 0.08 2.28 7.31 -2.39 -0.02 2.26 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 2.43 6.64 -2.39 -0.02 2.42 16 36 H 0.03 1.43 6.03 -2.38 -0.01 1.41 16 37 H 0.00 -0.06 7.96 -2.39 -0.02 -0.08 16 38 H -0.05 -2.89 8.13 -2.39 -0.02 -2.91 16 39 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.05 2.25 7.98 -2.39 -0.02 2.23 16 41 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.30 7.55 -2.38 -0.02 2.28 16 Total: -1.00 -71.10 333.53 -0.56 -71.66 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.30 Total: 12.96 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.95 Total: -17.18 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -3.86 Total: -88.58 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -2.97 Total: -26.72 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -71.10 -0.56 -71.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152765777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.411 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds