Wall clock time and date at job start Mon Mar 30 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45203 * 109.46648 * 2 1 4 4 C 1.34236 * 116.99437 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99941 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99808 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.46841 * 183.78451 * 6 4 3 8 8 H 1.09000 * 110.46661 * 51.84057 * 7 6 4 9 9 C 1.54377 * 110.41339 * 289.42024 * 7 6 4 10 10 C 1.54253 * 105.06495 * 217.36998 * 9 7 6 11 11 C 1.54383 * 105.06179 * 0.02562 * 10 9 7 12 12 N 1.48561 * 110.41161 * 174.25183 * 7 6 4 13 13 C 1.46906 * 110.99959 * 277.81986 * 12 7 6 14 14 C 1.53000 * 109.47100 * 164.30574 * 13 12 7 15 15 C 1.52995 * 109.46967 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47245 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00273 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99934 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47033 * 89.99487 * 20 18 16 22 22 H 1.48496 * 109.46997 * 209.99562 * 20 18 16 23 23 H 1.48499 * 109.47049 * 329.99995 * 20 18 16 24 24 H 1.08993 * 109.47035 * 299.99859 * 1 2 3 25 25 H 1.09001 * 109.46915 * 59.99818 * 1 2 3 26 26 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46597 * 240.00723 * 2 1 3 28 28 H 1.08993 * 109.47106 * 119.99909 * 2 1 3 29 29 H 1.08994 * 109.47156 * 63.78373 * 6 4 3 30 30 H 1.09002 * 109.46770 * 303.77990 * 6 4 3 31 31 H 1.09001 * 110.32258 * 336.27350 * 9 7 6 32 32 H 1.09007 * 110.32240 * 98.37115 * 9 7 6 33 33 H 1.09003 * 110.32711 * 118.89507 * 10 9 7 34 34 H 1.09002 * 110.32851 * 241.00749 * 10 9 7 35 35 H 1.09001 * 110.41368 * 265.07716 * 11 10 9 36 36 H 1.08995 * 110.41284 * 142.62464 * 11 10 9 37 37 H 1.09000 * 109.46819 * 284.30249 * 13 12 7 38 38 H 1.08996 * 109.46891 * 44.30524 * 13 12 7 39 39 H 1.09000 * 109.47020 * 299.99553 * 14 13 12 40 40 H 1.08993 * 109.47503 * 59.99716 * 14 13 12 41 41 H 1.09000 * 109.47764 * 299.99863 * 15 14 13 42 42 H 1.09005 * 109.47356 * 60.00281 * 15 14 13 43 43 H 0.97006 * 119.99762 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9375 0.0000 7 6 5.4457 2.8586 -0.0960 8 1 5.7427 2.2298 -0.9353 9 6 6.0407 2.3154 1.2209 10 6 7.3481 3.1077 1.4270 11 6 7.4328 4.0636 0.2176 12 7 6.0270 4.2185 -0.2364 13 6 5.9714 4.6733 -1.6322 14 6 6.2031 6.1847 -1.6857 15 6 6.1458 6.6582 -3.1394 16 6 6.3734 8.1471 -3.1921 17 1 6.5424 8.7001 -2.2800 18 6 6.3668 8.8030 -4.4049 19 7 6.5659 10.1021 -4.4509 20 14 6.0752 7.8463 -5.9826 21 1 4.6201 7.8082 -6.2766 22 1 6.7894 8.5096 -7.1029 23 1 6.5842 6.4605 -5.8224 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.6406 3.4462 0.9223 30 1 3.5312 3.4921 -0.8537 31 1 5.3547 2.4948 2.0487 32 1 6.2523 1.2499 1.1295 33 1 7.3038 3.6761 2.3560 34 1 8.2029 2.4315 1.4380 35 1 8.0405 3.6235 -0.5730 36 1 7.8426 5.0265 0.5222 37 1 6.7441 4.1666 -2.2104 38 1 4.9925 4.4407 -2.0513 39 1 5.4304 6.6914 -1.1075 40 1 7.1819 6.4174 -1.2665 41 1 6.9187 6.1516 -3.7174 42 1 5.1670 6.4256 -3.5591 43 1 6.5617 10.5635 -5.3042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156178177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:25 Heat of formation + Delta-G solvation = -103.971668 kcal Electronic energy + Delta-G solvation = -20707.599348 eV Core-core repulsion = 17559.075640 eV Total energy + Delta-G solvation = -3148.523708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76179 -39.03719 -36.79558 -34.48164 -32.49217 -32.36334 -31.51362 -30.41148 -26.75512 -26.46790 -23.58370 -22.74270 -21.54436 -20.92541 -20.06850 -19.70360 -17.85878 -16.98086 -16.71650 -16.49203 -15.57189 -15.31019 -14.67180 -14.57404 -14.11464 -13.92018 -13.41446 -13.26795 -13.05724 -12.76146 -12.63883 -12.34471 -12.16034 -12.02915 -11.86954 -11.62195 -11.32061 -11.19546 -10.95229 -10.88406 -10.79428 -10.68575 -10.58576 -10.48379 -9.88476 -9.65633 -9.55810 -9.14734 -8.51021 -8.35417 -6.01322 -3.98818 2.05856 2.42914 3.32206 3.39506 3.43223 4.07029 4.47516 4.47686 4.55249 4.60764 4.65084 4.77080 4.93864 4.95256 5.10985 5.18368 5.31684 5.32667 5.39747 5.44250 5.55207 5.55908 5.64888 5.68275 5.73098 5.86703 5.91861 5.99331 6.09951 6.17735 6.19553 6.27824 6.53645 6.59112 6.91208 7.04135 7.22562 7.38497 7.49563 7.59299 7.83437 8.58361 9.04678 9.61500 11.12330 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003854 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.154972 B = 7263.599575 C = 8455.912976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.509 6.509 6 C -0.102 4.102 7 C 0.072 3.928 8 H 0.060 0.940 9 C -0.115 4.115 10 C -0.125 4.125 11 C 0.036 3.964 12 N -0.506 5.506 13 C 0.040 3.960 14 C -0.092 4.092 15 C -0.014 4.014 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 -20.834 11.419 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.397 6.397 6 C -0.140 4.140 7 C -0.037 4.037 8 H 0.078 0.922 9 C -0.153 4.153 10 C -0.163 4.163 11 C -0.092 4.092 12 N -0.230 5.230 13 C -0.088 4.088 14 C -0.130 4.130 15 C -0.052 4.052 16 C -0.555 4.555 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.028 0.972 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.527 -20.596 11.598 24.807 hybrid contribution 0.267 -1.078 -1.535 1.895 sum -7.260 -21.674 10.063 24.975 Atomic orbital electron populations 1.21812 0.92616 1.02915 1.03685 1.23011 0.95405 0.80328 1.02507 1.86533 1.24744 1.32284 1.84061 1.23823 0.80410 0.92968 0.71987 1.90651 1.60317 1.43342 1.45386 1.21335 0.95588 0.90192 1.06836 1.22364 0.91865 0.90952 0.98518 0.92215 1.22324 0.96858 0.99769 0.96327 1.22315 0.97403 0.97777 0.98806 1.23108 0.89694 1.00015 0.96396 1.65258 1.14449 1.21215 1.22032 1.22554 1.00677 0.98666 0.86888 1.21379 1.01352 0.91029 0.99244 1.19567 0.96026 0.97258 0.92350 1.21151 1.48615 0.91038 0.94719 0.90999 1.25041 0.94744 0.94731 0.99081 1.69921 1.50643 1.08036 1.25839 0.86776 0.78544 0.80661 0.83275 1.20306 1.21447 1.19114 0.91412 0.91357 0.90304 0.91291 0.91302 0.86691 0.87309 0.91496 0.90835 0.91063 0.91592 0.93773 0.89562 0.94725 0.91479 0.91982 0.92886 0.96923 0.97158 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.94 10.22 -39.27 -0.40 -4.34 16 4 C 0.47 5.53 7.80 36.01 0.28 5.81 16 5 O -0.51 -7.07 14.68 -18.75 -0.28 -7.35 16 6 C -0.10 -1.14 5.47 -27.88 -0.15 -1.29 16 7 C 0.07 0.90 1.85 -66.07 -0.12 0.78 16 8 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 9 C -0.11 -1.29 5.70 -25.35 -0.14 -1.44 16 10 C -0.12 -1.35 7.00 -25.35 -0.18 -1.53 16 11 C 0.04 0.46 6.12 -2.19 -0.01 0.45 16 12 N -0.51 -7.20 4.98 -222.16 -1.11 -8.30 16 13 C 0.04 0.65 4.82 -3.82 -0.02 0.63 16 14 C -0.09 -1.83 5.33 -26.73 -0.14 -1.98 16 15 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 16 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.12 1.15 7.95 -51.93 -0.41 0.74 16 30 H 0.11 1.20 7.18 -51.93 -0.37 0.83 16 31 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 32 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.58 7.67 -51.93 -0.40 0.18 16 36 H 0.09 1.15 8.02 -51.93 -0.42 0.73 16 37 H 0.03 0.57 7.64 -51.93 -0.40 0.17 16 38 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 1.07 7.79 -51.93 -0.40 0.67 16 41 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -32.13 344.49 -8.62 -40.74 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.71 Total: -3.48 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -0.42 Total: -12.27 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.33 Total: -35.80 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.68 Total: -11.69 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.13 -8.62 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156178177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.229 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds