Wall clock time and date at job start Mon Mar 30 2020 01:32:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.45205 * 109.47323 * 2 1
4 4 C 1.34221 * 117.00053 * 179.97438 * 3 2 1
5 5 O 1.20826 * 120.00440 * 359.97438 * 4 3 2
6 6 C 1.50706 * 120.00112 * 179.97438 * 4 3 2
7 7 C 1.52998 * 109.47148 * 185.97424 * 6 4 3
8 8 H 1.09000 * 110.42441 * 308.05300 * 7 6 4
9 9 C 1.54915 * 110.37026 * 70.36867 * 7 6 4
10 10 C 1.55136 * 101.65388 * 155.89639 * 9 7 6
11 11 C 1.54322 * 103.01976 * 324.34484 * 10 9 7
12 12 N 1.47451 * 107.23452 * 22.28299 * 11 10 9
13 13 C 1.46898 * 110.99943 * 123.25407 * 12 11 10
14 14 C 1.53002 * 109.46586 * 75.44059 * 13 12 11
15 15 C 1.53007 * 109.46952 * 179.97438 * 14 13 12
16 16 C 1.50697 * 109.47050 * 179.97438 * 15 14 13
17 17 H 1.08003 * 120.00154 * 0.02562 * 16 15 14
18 18 C 1.37880 * 120.00046 * 179.97438 * 16 15 14
19 19 N 1.31511 * 119.99823 * 180.02562 * 18 16 15
20 20 Si 1.86796 * 119.99864 * 0.02562 * 18 16 15
21 21 H 1.48498 * 109.47312 * 90.00046 * 20 18 16
22 22 H 1.48500 * 109.47152 * 210.00196 * 20 18 16
23 23 H 1.48503 * 109.47085 * 330.00178 * 20 18 16
24 24 H 1.08997 * 109.47021 * 60.00041 * 1 2 3
25 25 H 1.09000 * 109.47066 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47063 * 300.00371 * 1 2 3
27 27 H 1.08993 * 109.47405 * 239.99739 * 2 1 3
28 28 H 1.09001 * 109.47154 * 119.99465 * 2 1 3
29 29 H 1.09008 * 109.46627 * 65.98048 * 6 4 3
30 30 H 1.08993 * 109.46862 * 305.98321 * 6 4 3
31 31 H 1.08996 * 110.99198 * 37.80149 * 9 7 6
32 32 H 1.09002 * 111.01974 * 274.00259 * 9 7 6
33 33 H 1.08994 * 110.70840 * 205.96032 * 10 9 7
34 34 H 1.09005 * 110.70340 * 82.72462 * 10 9 7
35 35 H 1.08993 * 109.88642 * 262.88099 * 11 10 9
36 36 H 1.09003 * 110.02455 * 141.76252 * 11 10 9
37 37 H 1.08994 * 109.47367 * 315.44031 * 13 12 11
38 38 H 1.08997 * 109.46840 * 195.43572 * 13 12 11
39 39 H 1.08999 * 109.47443 * 299.99774 * 14 13 12
40 40 H 1.09003 * 109.47470 * 59.99726 * 14 13 12
41 41 H 1.08997 * 109.46855 * 299.99745 * 15 14 13
42 42 H 1.08994 * 109.46986 * 59.99980 * 15 14 13
43 43 H 0.97002 * 119.99433 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0015
6 6 3.9208 2.9374 0.0000
7 6 5.4415 2.8602 -0.1494
8 1 5.8625 2.1811 0.5920
9 6 5.8202 2.3997 -1.5792
10 6 7.2530 2.9763 -1.7249
11 6 7.1699 4.3123 -0.9570
12 7 6.0408 4.2051 -0.0148
13 6 6.4816 4.4491 1.3651
14 6 6.7129 5.9478 1.5689
15 6 7.1714 6.2022 3.0063
16 6 7.3998 7.6782 3.2069
17 1 7.2341 8.3661 2.3910
18 6 7.8194 8.1506 4.4325
19 7 8.0182 9.4387 4.6076
20 14 8.1054 6.9609 5.8439
21 1 9.5148 6.4939 5.8198
22 1 7.8331 7.6470 7.1325
23 1 7.1955 5.7959 5.7014
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 1.8933 -0.5138 -0.8899
28 1 1.8933 -0.5138 0.8900
29 1 3.6726 3.4336 0.9383
30 1 3.5021 3.5034 -0.8321
31 1 5.1478 2.8326 -2.3198
32 1 5.8279 1.3120 -1.6504
33 1 7.4941 3.1491 -2.7738
34 1 7.9844 2.3120 -1.2646
35 1 6.9939 5.1308 -1.6549
36 1 8.0956 4.4856 -0.4082
37 1 7.4103 3.9096 1.5507
38 1 5.7151 4.1022 2.0581
39 1 7.4793 6.2948 0.8759
40 1 5.7841 6.4874 1.3833
41 1 6.4046 5.8554 3.6990
42 1 8.1000 5.6626 3.1923
43 1 8.3137 9.7710 5.4697
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000156178293.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:27
Heat of formation + Delta-G solvation = -104.601587 kcal
Electronic energy + Delta-G solvation = -20687.638272 eV
Core-core repulsion = 17539.087249 eV
Total energy + Delta-G solvation = -3148.551023 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.75186 -39.07832 -36.80098 -34.46343 -32.51413 -32.30441 -31.50617 -30.35461
-26.82207 -26.44074 -23.60197 -22.73750 -21.64016 -21.02119 -19.81370 -19.70756
-17.88281 -16.93777 -16.79368 -16.57159 -15.57561 -15.39298 -14.76588 -14.18088
-14.12666 -13.72104 -13.60304 -13.33577 -13.06711 -12.77966 -12.53660 -12.41976
-12.22293 -12.04378 -11.87710 -11.64311 -11.33235 -11.08305 -10.93620 -10.88228
-10.81610 -10.74426 -10.59049 -10.54228 -9.90566 -9.67028 -9.53799 -9.13954
-8.50628 -8.18773 -6.01049 -3.98477 2.06896 2.43275 3.32503 3.39870
3.43784 4.04803 4.47967 4.48484 4.56348 4.60571 4.64201 4.74125
4.93710 4.94948 5.10838 5.19621 5.31926 5.32955 5.39983 5.43784
5.56107 5.60267 5.63733 5.68861 5.72610 5.80764 5.91621 5.97699
6.07150 6.19728 6.23813 6.28081 6.56893 6.60988 6.94159 7.14001
7.27291 7.40846 7.49954 7.60353 7.83924 8.58722 9.04977 9.61832
11.12604
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.019538 B = 0.003662 C = 0.003263
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1432.755531 B = 7643.803009 C = 8578.197210
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.061 3.939
3 O -0.359 6.359
4 C 0.465 3.535
5 O -0.510 6.510
6 C -0.100 4.100
7 C 0.081 3.919
8 H 0.066 0.934
9 C -0.124 4.124
10 C -0.142 4.142
11 C 0.045 3.955
12 N -0.526 5.526
13 C 0.048 3.952
14 C -0.094 4.094
15 C -0.014 4.014
16 C -0.517 4.517
17 H 0.072 0.928
18 C 0.065 3.935
19 N -0.905 5.905
20 Si 0.880 3.120
21 H -0.278 1.278
22 H -0.288 1.288
23 H -0.266 1.266
24 H 0.067 0.933
25 H 0.078 0.922
26 H 0.067 0.933
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.111 0.889
30 H 0.111 0.889
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.073 0.927
34 H 0.065 0.935
35 H 0.078 0.922
36 H 0.061 0.939
37 H 0.033 0.967
38 H 0.066 0.934
39 H 0.052 0.948
40 H 0.061 0.939
41 H 0.015 0.985
42 H 0.008 0.992
43 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.082 -19.143 -12.636 25.474
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.013 4.013
3 O -0.276 6.276
4 C 0.308 3.692
5 O -0.398 6.398
6 C -0.138 4.138
7 C -0.027 4.027
8 H 0.084 0.916
9 C -0.162 4.162
10 C -0.180 4.180
11 C -0.083 4.083
12 N -0.250 5.250
13 C -0.080 4.080
14 C -0.132 4.132
15 C -0.052 4.052
16 C -0.555 4.555
17 H 0.090 0.910
18 C -0.136 4.136
19 N -0.544 5.544
20 Si 0.707 3.293
21 H -0.204 1.204
22 H -0.214 1.214
23 H -0.191 1.191
24 H 0.086 0.914
25 H 0.097 0.903
26 H 0.086 0.914
27 H 0.087 0.913
28 H 0.087 0.913
29 H 0.129 0.871
30 H 0.129 0.871
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.092 0.908
34 H 0.084 0.916
35 H 0.096 0.904
36 H 0.079 0.921
37 H 0.051 0.949
38 H 0.084 0.916
39 H 0.071 0.929
40 H 0.080 0.920
41 H 0.033 0.967
42 H 0.026 0.974
43 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -11.199 -18.939 -12.607 25.358
hybrid contribution 0.842 -1.240 1.134 1.880
sum -10.357 -20.179 -11.473 25.418
Atomic orbital electron populations
1.21809 0.92632 1.02911 1.03656 1.23007 0.95386 0.80367 1.02517
1.86528 1.24792 1.32259 1.84068 1.23863 0.80380 0.93025 0.71896
1.90650 1.60322 1.43398 1.45464 1.21315 0.95806 0.89963 1.06699
1.22274 0.92108 0.90523 0.97826 0.91617 1.22766 0.96643 1.01003
0.95795 1.22787 0.97004 0.97228 1.00985 1.22823 0.93039 0.97171
0.95248 1.63354 1.28894 1.26166 1.06578 1.22539 0.98417 0.99343
0.87660 1.21426 1.01187 0.91754 0.98812 1.19563 0.95571 0.97618
0.92441 1.21153 1.44917 0.91122 0.98321 0.91001 1.25042 0.94983
0.94959 0.98620 1.69921 1.47363 1.12808 1.24348 0.86776 0.78913
0.81677 0.81890 1.20399 1.21422 1.19051 0.91431 0.90312 0.91366
0.91319 0.91285 0.87070 0.87085 0.90915 0.90486 0.90842 0.91608
0.90404 0.92073 0.94905 0.91560 0.92899 0.91983 0.96716 0.97374
0.92805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16
2 C 0.06 0.52 6.19 37.16 0.23 0.75 16
3 O -0.36 -3.89 10.22 -39.23 -0.40 -4.29 16
4 C 0.47 5.51 7.72 36.01 0.28 5.78 16
5 O -0.51 -7.14 14.71 -18.75 -0.28 -7.42 16
6 C -0.10 -1.10 5.64 -27.88 -0.16 -1.26 16
7 C 0.08 1.02 1.96 -66.18 -0.13 0.89 16
8 H 0.07 0.91 7.46 -51.93 -0.39 0.53 16
9 C -0.12 -1.37 5.94 -24.59 -0.15 -1.52 16
10 C -0.14 -1.53 6.94 -24.91 -0.17 -1.71 16
11 C 0.04 0.58 6.30 -2.83 -0.02 0.56 16
12 N -0.53 -7.46 4.77 -223.37 -1.07 -8.53 16
13 C 0.05 0.79 4.58 -3.82 -0.02 0.77 16
14 C -0.09 -1.87 5.26 -26.73 -0.14 -2.01 16
15 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16
16 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16
17 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16
18 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16
19 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16
20 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16
21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
23 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16
24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16
26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
27 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16
28 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16
29 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16
30 H 0.11 1.09 8.01 -51.93 -0.42 0.67 16
31 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16
32 H 0.08 0.88 7.53 -51.93 -0.39 0.49 16
33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
36 H 0.06 0.84 7.16 -51.93 -0.37 0.47 16
37 H 0.03 0.54 7.78 -51.93 -0.40 0.14 16
38 H 0.07 1.06 7.99 -51.93 -0.42 0.64 16
39 H 0.05 1.07 7.54 -51.93 -0.39 0.67 16
40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16
42 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16
43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
LS Contribution 345.80 15.07 5.21 5.21
Total: -1.00 -32.18 345.80 -8.63 -40.81
By element:
Atomic # 1 Polarization: 4.35 SS G_CDS: -7.77 Total: -3.42 kcal
Atomic # 6 Polarization: -11.77 SS G_CDS: -0.44 Total: -12.21 kcal
Atomic # 7 Polarization: -35.76 SS G_CDS: -0.29 Total: -36.05 kcal
Atomic # 8 Polarization: -11.03 SS G_CDS: -0.68 Total: -11.71 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -32.18 -8.63 -40.81 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156178293.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.794 kcal
(2) G-P(sol) polarization free energy of solvation -32.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.602 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds