Wall clock time and date at job start Mon Mar 30 2020 01:32:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.45205 * 109.47323 * 2 1
4 4 C 1.34221 * 117.00053 * 179.97438 * 3 2 1
5 5 O 1.20826 * 120.00440 * 359.97438 * 4 3 2
6 6 C 1.50706 * 120.00112 * 179.97438 * 4 3 2
7 7 C 1.52998 * 109.47148 * 185.97424 * 6 4 3
8 8 H 1.09000 * 110.42441 * 308.05300 * 7 6 4
9 9 C 1.54915 * 110.37026 * 70.36867 * 7 6 4
10 10 C 1.55136 * 101.65388 * 155.89639 * 9 7 6
11 11 C 1.54322 * 103.01976 * 324.34484 * 10 9 7
12 12 N 1.47451 * 107.23452 * 22.28299 * 11 10 9
13 13 C 1.46898 * 110.99943 * 123.25407 * 12 11 10
14 14 C 1.53002 * 109.46586 * 75.44059 * 13 12 11
15 15 C 1.53007 * 109.46952 * 179.97438 * 14 13 12
16 16 C 1.50697 * 109.47050 * 179.97438 * 15 14 13
17 17 H 1.08003 * 120.00154 * 0.02562 * 16 15 14
18 18 C 1.37880 * 120.00046 * 179.97438 * 16 15 14
19 19 N 1.31511 * 119.99823 * 180.02562 * 18 16 15
20 20 Si 1.86796 * 119.99864 * 0.02562 * 18 16 15
21 21 H 1.48498 * 109.47312 * 90.00046 * 20 18 16
22 22 H 1.48500 * 109.47152 * 210.00196 * 20 18 16
23 23 H 1.48503 * 109.47085 * 330.00178 * 20 18 16
24 24 H 1.08997 * 109.47021 * 60.00041 * 1 2 3
25 25 H 1.09000 * 109.47066 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47063 * 300.00371 * 1 2 3
27 27 H 1.08993 * 109.47405 * 239.99739 * 2 1 3
28 28 H 1.09001 * 109.47154 * 119.99465 * 2 1 3
29 29 H 1.09008 * 109.46627 * 65.98048 * 6 4 3
30 30 H 1.08993 * 109.46862 * 305.98321 * 6 4 3
31 31 H 1.08996 * 110.99198 * 37.80149 * 9 7 6
32 32 H 1.09002 * 111.01974 * 274.00259 * 9 7 6
33 33 H 1.08994 * 110.70840 * 205.96032 * 10 9 7
34 34 H 1.09005 * 110.70340 * 82.72462 * 10 9 7
35 35 H 1.08993 * 109.88642 * 262.88099 * 11 10 9
36 36 H 1.09003 * 110.02455 * 141.76252 * 11 10 9
37 37 H 1.08994 * 109.47367 * 315.44031 * 13 12 11
38 38 H 1.08997 * 109.46840 * 195.43572 * 13 12 11
39 39 H 1.08999 * 109.47443 * 299.99774 * 14 13 12
40 40 H 1.09003 * 109.47470 * 59.99726 * 14 13 12
41 41 H 1.08997 * 109.46855 * 299.99745 * 15 14 13
42 42 H 1.08994 * 109.46986 * 59.99980 * 15 14 13
43 43 H 0.97002 * 119.99433 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0015
6 6 3.9208 2.9374 0.0000
7 6 5.4415 2.8602 -0.1494
8 1 5.8625 2.1811 0.5920
9 6 5.8202 2.3997 -1.5792
10 6 7.2530 2.9763 -1.7249
11 6 7.1699 4.3123 -0.9570
12 7 6.0408 4.2051 -0.0148
13 6 6.4816 4.4491 1.3651
14 6 6.7129 5.9478 1.5689
15 6 7.1714 6.2022 3.0063
16 6 7.3998 7.6782 3.2069
17 1 7.2341 8.3661 2.3910
18 6 7.8194 8.1506 4.4325
19 7 8.0182 9.4387 4.6076
20 14 8.1054 6.9609 5.8439
21 1 9.5148 6.4939 5.8198
22 1 7.8331 7.6470 7.1325
23 1 7.1955 5.7959 5.7014
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 1.8933 -0.5138 -0.8899
28 1 1.8933 -0.5138 0.8900
29 1 3.6726 3.4336 0.9383
30 1 3.5021 3.5034 -0.8321
31 1 5.1478 2.8326 -2.3198
32 1 5.8279 1.3120 -1.6504
33 1 7.4941 3.1491 -2.7738
34 1 7.9844 2.3120 -1.2646
35 1 6.9939 5.1308 -1.6549
36 1 8.0956 4.4856 -0.4082
37 1 7.4103 3.9096 1.5507
38 1 5.7151 4.1022 2.0581
39 1 7.4793 6.2948 0.8759
40 1 5.7841 6.4874 1.3833
41 1 6.4046 5.8554 3.6990
42 1 8.1000 5.6626 3.1923
43 1 8.3137 9.7710 5.4697
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000156178293.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:27
Heat of formation + Delta-G solvation = -124.084151 kcal
Electronic energy + Delta-G solvation = -20688.483100 eV
Core-core repulsion = 17539.087249 eV
Total energy + Delta-G solvation = -3149.395851 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.65878 -40.10632 -37.69764 -36.17194 -34.31758 -33.20891 -32.23879 -31.91602
-28.19329 -27.72288 -24.58305 -24.03031 -22.56227 -22.32002 -21.19758 -20.81009
-18.94584 -18.71262 -17.76707 -17.60542 -16.73349 -16.47798 -16.12528 -15.59619
-15.46470 -14.93120 -14.64242 -14.51637 -14.18131 -13.86726 -13.74312 -13.59782
-13.40483 -13.15742 -12.88404 -12.79805 -12.56475 -12.47277 -12.25043 -12.03213
-11.84182 -11.79173 -11.60501 -11.57678 -11.50166 -11.42089 -11.34871 -11.20657
-10.75517 -9.32182 -8.28538 -6.32388 1.16173 1.35876 1.37793 1.50006
1.62686 2.36809 2.99272 3.06785 3.57555 3.62877 3.86332 3.99996
4.01015 4.08574 4.17055 4.21310 4.31691 4.35706 4.35755 4.44508
4.68436 4.71814 4.72514 4.82463 4.89225 4.92750 4.93467 4.95193
5.00002 5.07700 5.08577 5.13500 5.18707 5.33572 5.47808 5.55533
5.61928 5.67882 6.05055 6.10784 6.31880 6.72226 6.76073 7.32078
8.88554
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.019538 B = 0.003662 C = 0.003263
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1432.755531 B = 7643.803009 C = 8578.197210
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.053 3.947
3 O -0.364 6.364
4 C 0.470 3.530
5 O -0.535 6.535
6 C -0.096 4.096
7 C 0.081 3.919
8 H 0.052 0.948
9 C -0.118 4.118
10 C -0.134 4.134
11 C 0.039 3.961
12 N -0.530 5.530
13 C 0.059 3.941
14 C -0.083 4.083
15 C -0.011 4.011
16 C -0.531 4.531
17 H 0.030 0.970
18 C 0.002 3.998
19 N -0.953 5.953
20 Si 0.952 3.048
21 H -0.267 1.267
22 H -0.283 1.283
23 H -0.246 1.246
24 H 0.069 0.931
25 H 0.099 0.901
26 H 0.066 0.934
27 H 0.071 0.929
28 H 0.066 0.934
29 H 0.113 0.887
30 H 0.127 0.873
31 H 0.084 0.916
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.065 0.935
35 H 0.080 0.920
36 H 0.049 0.951
37 H 0.034 0.966
38 H 0.073 0.927
39 H 0.044 0.956
40 H 0.051 0.949
41 H 0.021 0.979
42 H 0.015 0.985
43 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.844 -21.417 -12.799 27.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.021 4.021
3 O -0.280 6.280
4 C 0.314 3.686
5 O -0.425 6.425
6 C -0.134 4.134
7 C -0.027 4.027
8 H 0.070 0.930
9 C -0.156 4.156
10 C -0.172 4.172
11 C -0.088 4.088
12 N -0.254 5.254
13 C -0.068 4.068
14 C -0.121 4.121
15 C -0.049 4.049
16 C -0.569 4.569
17 H 0.049 0.951
18 C -0.195 4.195
19 N -0.594 5.594
20 Si 0.775 3.225
21 H -0.193 1.193
22 H -0.209 1.209
23 H -0.169 1.169
24 H 0.088 0.912
25 H 0.118 0.882
26 H 0.085 0.915
27 H 0.090 0.910
28 H 0.084 0.916
29 H 0.131 0.869
30 H 0.145 0.855
31 H 0.103 0.897
32 H 0.093 0.907
33 H 0.111 0.889
34 H 0.084 0.916
35 H 0.099 0.901
36 H 0.068 0.932
37 H 0.052 0.948
38 H 0.091 0.909
39 H 0.063 0.937
40 H 0.070 0.930
41 H 0.039 0.961
42 H 0.033 0.967
43 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -11.981 -21.223 -12.795 27.526
hybrid contribution 1.041 -0.467 1.107 1.589
sum -10.940 -21.690 -11.688 26.959
Atomic orbital electron populations
1.21829 0.90611 1.04322 1.03692 1.23276 0.96988 0.79245 1.02545
1.86525 1.24116 1.33741 1.83661 1.23916 0.80591 0.92882 0.71161
1.90641 1.60908 1.44186 1.46781 1.21288 0.94865 0.89854 1.07430
1.22281 0.92809 0.89151 0.98478 0.93019 1.22733 0.96936 1.00898
0.95007 1.22753 0.96916 0.95754 1.01803 1.22890 0.92117 0.98637
0.95164 1.63300 1.29334 1.27428 1.05362 1.22277 0.98830 0.96332
0.89410 1.21224 1.00203 0.94500 0.96167 1.19507 0.96070 0.94203
0.95099 1.21510 1.44721 0.93298 0.97379 0.95128 1.26049 0.94625
0.96884 1.01902 1.70077 1.48704 1.15193 1.25429 0.85630 0.79602
0.79542 0.77699 1.19251 1.20911 1.16924 0.91150 0.88221 0.91525
0.91044 0.91582 0.86936 0.85544 0.89724 0.90651 0.88882 0.91646
0.90132 0.93213 0.94793 0.90889 0.93711 0.92970 0.96111 0.96653
0.92518
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.47 10.29 71.98 0.74 -0.73 16
2 C 0.05 0.82 6.19 71.98 0.45 1.27 16
3 O -0.36 -7.34 10.22 -51.33 -0.52 -7.87 16
4 C 0.47 10.48 7.72 71.24 0.55 11.03 16
5 O -0.54 -14.40 14.71 21.97 0.32 -14.08 16
6 C -0.10 -1.97 5.64 29.85 0.17 -1.80 16
7 C 0.08 1.90 1.96 45.39 0.09 1.99 16
8 H 0.05 1.37 7.46 -2.39 -0.02 1.36 16
9 C -0.12 -2.35 5.94 31.98 0.19 -2.16 16
10 C -0.13 -2.62 6.94 31.77 0.22 -2.40 16
11 C 0.04 0.97 6.30 86.65 0.55 1.52 16
12 N -0.53 -14.31 4.77 -860.61 -4.11 -18.41 16
13 C 0.06 1.88 4.58 86.30 0.40 2.27 16
14 C -0.08 -3.29 5.26 30.60 0.16 -3.13 16
15 C -0.01 -0.52 4.04 29.85 0.12 -0.39 16
16 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16
17 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16
18 C 0.00 0.11 5.47 84.66 0.46 0.57 16
19 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16
20 Si 0.95 44.93 27.47 68.60 1.88 46.82 16
21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
23 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16
24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
25 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16
26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
27 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16
28 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16
29 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16
30 H 0.13 2.19 8.01 -2.39 -0.02 2.17 16
31 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16
32 H 0.07 1.57 7.53 -2.39 -0.02 1.56 16
33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16
35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
36 H 0.05 1.33 7.16 -2.39 -0.02 1.32 16
37 H 0.03 1.07 7.78 -2.39 -0.02 1.05 16
38 H 0.07 2.21 7.99 -2.39 -0.02 2.19 16
39 H 0.04 1.82 7.54 -2.39 -0.02 1.80 16
40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
41 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16
42 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16
43 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16
Total: -1.00 -69.63 345.80 3.11 -66.52
By element:
Atomic # 1 Polarization: 9.79 SS G_CDS: 0.89 Total: 10.68 kcal
Atomic # 6 Polarization: -27.42 SS G_CDS: 4.34 Total: -23.08 kcal
Atomic # 7 Polarization: -75.19 SS G_CDS: -3.81 Total: -79.00 kcal
Atomic # 8 Polarization: -21.74 SS G_CDS: -0.20 Total: -21.94 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal
Total: -69.63 3.11 -66.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156178293.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.560 kcal
(2) G-P(sol) polarization free energy of solvation -69.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.191 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.084 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds