Wall clock time and date at job start Mon Mar 30 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45213 * 1 3 3 C 1.34229 * 116.99600 * 2 1 4 4 O 1.20826 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99650 * 179.97438 * 3 2 1 6 6 N 1.46903 * 110.01972 * 323.83789 * 5 3 2 7 7 C 1.46901 * 110.99874 * 181.75439 * 6 5 3 8 8 C 1.46900 * 110.99634 * 305.70672 * 6 5 3 9 9 C 1.53001 * 109.46812 * 164.29764 * 8 6 5 10 10 C 1.52999 * 109.46922 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47268 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99733 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99993 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00101 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99719 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46989 * 89.99704 * 15 13 11 17 17 H 1.48503 * 109.47250 * 209.99572 * 15 13 11 18 18 H 1.48495 * 109.47413 * 329.99904 * 15 13 11 19 19 C 1.54265 * 110.02858 * 85.22717 * 5 3 2 20 20 C 1.54968 * 104.16371 * 95.75669 * 19 5 3 21 21 C 1.54892 * 102.77365 * 37.88438 * 20 19 5 22 22 C 1.53869 * 110.03378 * 202.44311 * 5 3 2 23 23 H 1.08996 * 109.46476 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47099 * 300.00031 * 1 2 3 25 25 H 1.08998 * 109.46929 * 60.00108 * 1 2 3 26 26 H 1.09001 * 109.46699 * 188.77542 * 7 6 5 27 27 H 1.08997 * 109.46823 * 308.77126 * 7 6 5 28 28 H 1.08997 * 109.47337 * 68.77231 * 7 6 5 29 29 H 1.08998 * 109.47518 * 44.29713 * 8 6 5 30 30 H 1.08998 * 109.46961 * 284.29622 * 8 6 5 31 31 H 1.09003 * 109.47179 * 60.00443 * 9 8 6 32 32 H 1.08998 * 109.47241 * 299.99686 * 9 8 6 33 33 H 1.09001 * 109.47642 * 300.00057 * 10 9 8 34 34 H 1.08998 * 109.47213 * 60.00068 * 10 9 8 35 35 H 0.96994 * 119.99968 * 179.97438 * 14 13 11 36 36 H 1.09006 * 110.48765 * 214.39790 * 19 5 3 37 37 H 1.09005 * 110.49135 * 337.04013 * 19 5 3 38 38 H 1.09003 * 110.71273 * 279.57598 * 20 19 5 39 39 H 1.08991 * 110.92377 * 156.29209 * 20 19 5 40 40 H 1.09001 * 110.48463 * 203.41046 * 21 20 19 41 41 H 1.08993 * 110.48399 * 80.76734 * 21 20 19 42 42 H 1.09000 * 110.03404 * 359.95514 * 22 5 3 43 43 H 1.09003 * 110.03494 * 121.38748 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1266 0.1886 0.8155 7 6 5.5925 0.2698 0.8649 8 6 3.5530 0.1955 2.1679 9 6 3.8435 -1.1420 2.8518 10 6 3.2467 -1.1346 4.2606 11 6 3.5333 -2.4517 4.9345 12 1 4.0855 -3.2175 4.4103 13 6 3.0897 -2.6793 6.2200 14 7 2.4168 -1.7468 6.8582 15 14 3.4443 -4.3121 7.0550 16 1 4.7366 -4.2261 7.7816 17 1 2.3559 -4.6234 8.0161 18 1 3.5226 -5.3850 6.0313 19 6 4.1008 1.1818 -1.4435 20 6 4.2955 2.6584 -1.8717 21 6 4.8195 3.3247 -0.5753 22 6 4.0226 2.6369 0.5524 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 5.9902 -0.6270 1.3400 27 1 5.9863 0.3492 -0.1484 28 1 5.8887 1.1473 1.4396 29 1 2.4752 0.3447 2.1047 30 1 3.9984 1.0042 2.7473 31 1 4.9214 -1.2912 2.9151 32 1 3.3981 -1.9507 2.2724 33 1 3.6924 -0.3259 4.8398 34 1 2.1688 -0.9851 4.1978 35 1 2.1044 -1.9070 7.7623 36 1 5.0523 0.6502 -1.4647 37 1 3.3732 0.6894 -2.0887 38 1 3.3465 3.0997 -2.1765 39 1 5.0315 2.7379 -2.6716 40 1 4.6161 4.3955 -0.5877 41 1 5.8869 3.1395 -0.4559 42 1 3.1555 3.2412 0.8190 43 1 4.6597 2.4919 1.4248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159284400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:35 Heat of formation + Delta-G solvation = -91.270890 kcal Electronic energy + Delta-G solvation = -21935.804295 eV Core-core repulsion = 18787.831334 eV Total energy + Delta-G solvation = -3147.972961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10116 -38.75191 -36.44745 -35.49848 -33.39986 -31.25373 -29.32421 -28.92375 -27.28840 -26.98989 -24.71114 -22.50350 -22.18036 -20.95266 -19.95089 -19.05712 -17.53002 -16.86740 -16.52398 -16.16800 -15.63592 -15.06971 -14.64043 -14.47572 -14.25819 -13.83384 -13.40238 -13.02385 -12.85054 -12.46358 -12.25674 -11.99637 -11.95988 -11.76317 -11.44334 -11.27722 -11.25198 -11.22434 -11.07018 -10.78769 -10.67059 -10.63846 -10.52738 -10.45542 -10.18928 -9.58367 -9.30009 -9.03638 -8.31385 -8.14236 -5.96518 -3.98424 2.22284 2.79556 3.34123 3.40231 3.44093 3.84817 4.37966 4.43240 4.50178 4.73399 4.99717 5.15213 5.18668 5.21006 5.27435 5.31447 5.39303 5.45195 5.47402 5.56959 5.58984 5.63189 5.72354 5.76305 5.84686 5.91840 5.93679 6.08911 6.12569 6.20760 6.32401 6.48574 6.70523 6.76688 7.08383 7.23438 7.30693 7.72155 7.86237 7.87122 8.04078 8.47369 9.08808 9.65370 11.15016 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.004513 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.678888 B = 6202.926473 C = 6741.447286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.334 6.334 3 C 0.482 3.518 4 O -0.512 6.512 5 C 0.117 3.883 6 N -0.519 5.519 7 C 0.018 3.982 8 C 0.053 3.947 9 C -0.099 4.099 10 C 0.022 3.978 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.153 4.153 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 8.000 -17.731 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.249 6.249 3 C 0.324 3.676 4 O -0.400 6.400 5 C 0.025 3.975 6 N -0.243 5.243 7 C -0.129 4.129 8 C -0.074 4.074 9 C -0.137 4.137 10 C -0.016 4.016 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.147 4.147 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.192 4.192 23 H 0.121 0.879 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.504 7.859 -17.779 19.599 hybrid contribution 0.013 -0.049 1.090 1.091 sum 2.517 7.810 -16.689 18.597 Atomic orbital electron populations 1.23302 0.76896 1.03900 1.02116 1.86681 1.22681 1.32462 1.83027 1.23367 0.91360 0.81453 0.71407 1.90628 1.66662 1.36640 1.46059 1.21643 0.86960 0.91985 0.96897 1.62344 1.06238 1.41298 1.14456 1.22551 0.87129 1.01642 1.01584 1.22422 0.98749 0.99873 0.86344 1.21585 1.00277 0.93832 0.97996 1.19075 0.95974 0.97003 0.89538 1.21240 1.34890 1.00446 0.98875 0.92631 1.25026 0.95256 0.96732 0.97494 1.69969 1.37897 1.33361 1.12431 0.86604 0.77835 0.84251 0.79374 1.20727 1.21283 1.19835 1.22520 1.02534 0.97447 0.92151 1.22565 1.01486 0.94834 0.97585 1.22274 0.99404 0.99689 0.94058 1.22886 1.01743 0.95250 0.99321 0.87910 0.91845 0.92358 0.90187 0.91275 0.95123 0.91810 0.94839 0.93343 0.92311 0.96918 0.96755 0.93081 0.88779 0.90851 0.91245 0.90897 0.91298 0.91378 0.89632 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.33 -5.26 9.53 -39.25 -0.37 -5.63 16 3 C 0.48 7.60 5.11 36.00 0.18 7.79 16 4 O -0.51 -8.80 15.24 -18.75 -0.29 -9.09 16 5 C 0.12 1.60 0.58 -131.64 -0.08 1.52 16 6 N -0.52 -7.83 4.39 -227.21 -1.00 -8.83 16 7 C 0.02 0.23 8.62 60.07 0.52 0.75 16 8 C 0.05 0.96 4.19 -3.82 -0.02 0.95 16 9 C -0.10 -2.09 5.19 -26.73 -0.14 -2.23 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.11 -1.19 5.83 -25.03 -0.15 -1.33 16 20 C -0.13 -1.19 6.91 -24.69 -0.17 -1.36 16 21 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 22 C -0.15 -1.95 5.09 -25.61 -0.13 -2.08 16 23 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.08 1.06 6.89 -51.93 -0.36 0.71 16 27 H 0.07 0.71 5.72 -51.93 -0.30 0.41 16 28 H 0.03 0.37 6.34 -51.93 -0.33 0.05 16 29 H 0.06 1.24 5.96 -51.93 -0.31 0.93 16 30 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 31 H 0.05 0.99 6.86 -51.93 -0.36 0.63 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.09 0.92 5.67 -51.93 -0.29 0.63 16 37 H 0.07 0.80 7.83 -51.93 -0.41 0.40 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.23 6.66 -51.93 -0.35 0.88 16 43 H 0.08 1.04 5.21 -51.93 -0.27 0.77 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -32.07 333.43 -7.65 -39.72 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.10 Total: -2.43 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 0.37 Total: -9.02 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.26 Total: -35.41 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.66 Total: -14.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.07 -7.65 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159284400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.554 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds