Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45213 * 1 3 3 C 1.34229 * 116.99600 * 2 1 4 4 O 1.20826 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99650 * 179.97438 * 3 2 1 6 6 N 1.46903 * 110.01972 * 323.83789 * 5 3 2 7 7 C 1.46901 * 110.99874 * 181.75439 * 6 5 3 8 8 C 1.46900 * 110.99634 * 305.70672 * 6 5 3 9 9 C 1.53001 * 109.46812 * 164.29764 * 8 6 5 10 10 C 1.52999 * 109.46922 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47268 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99733 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99993 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00101 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99719 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46989 * 89.99704 * 15 13 11 17 17 H 1.48503 * 109.47250 * 209.99572 * 15 13 11 18 18 H 1.48495 * 109.47413 * 329.99904 * 15 13 11 19 19 C 1.54265 * 110.02858 * 85.22717 * 5 3 2 20 20 C 1.54968 * 104.16371 * 95.75669 * 19 5 3 21 21 C 1.54892 * 102.77365 * 37.88438 * 20 19 5 22 22 C 1.53869 * 110.03378 * 202.44311 * 5 3 2 23 23 H 1.08996 * 109.46476 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47099 * 300.00031 * 1 2 3 25 25 H 1.08998 * 109.46929 * 60.00108 * 1 2 3 26 26 H 1.09001 * 109.46699 * 188.77542 * 7 6 5 27 27 H 1.08997 * 109.46823 * 308.77126 * 7 6 5 28 28 H 1.08997 * 109.47337 * 68.77231 * 7 6 5 29 29 H 1.08998 * 109.47518 * 44.29713 * 8 6 5 30 30 H 1.08998 * 109.46961 * 284.29622 * 8 6 5 31 31 H 1.09003 * 109.47179 * 60.00443 * 9 8 6 32 32 H 1.08998 * 109.47241 * 299.99686 * 9 8 6 33 33 H 1.09001 * 109.47642 * 300.00057 * 10 9 8 34 34 H 1.08998 * 109.47213 * 60.00068 * 10 9 8 35 35 H 0.96994 * 119.99968 * 179.97438 * 14 13 11 36 36 H 1.09006 * 110.48765 * 214.39790 * 19 5 3 37 37 H 1.09005 * 110.49135 * 337.04013 * 19 5 3 38 38 H 1.09003 * 110.71273 * 279.57598 * 20 19 5 39 39 H 1.08991 * 110.92377 * 156.29209 * 20 19 5 40 40 H 1.09001 * 110.48463 * 203.41046 * 21 20 19 41 41 H 1.08993 * 110.48399 * 80.76734 * 21 20 19 42 42 H 1.09000 * 110.03404 * 359.95514 * 22 5 3 43 43 H 1.09003 * 110.03494 * 121.38748 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1266 0.1886 0.8155 7 6 5.5925 0.2698 0.8649 8 6 3.5530 0.1955 2.1679 9 6 3.8435 -1.1420 2.8518 10 6 3.2467 -1.1346 4.2606 11 6 3.5333 -2.4517 4.9345 12 1 4.0855 -3.2175 4.4103 13 6 3.0897 -2.6793 6.2200 14 7 2.4168 -1.7468 6.8582 15 14 3.4443 -4.3121 7.0550 16 1 4.7366 -4.2261 7.7816 17 1 2.3559 -4.6234 8.0161 18 1 3.5226 -5.3850 6.0313 19 6 4.1008 1.1818 -1.4435 20 6 4.2955 2.6584 -1.8717 21 6 4.8195 3.3247 -0.5753 22 6 4.0226 2.6369 0.5524 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 5.9902 -0.6270 1.3400 27 1 5.9863 0.3492 -0.1484 28 1 5.8887 1.1473 1.4396 29 1 2.4752 0.3447 2.1047 30 1 3.9984 1.0042 2.7473 31 1 4.9214 -1.2912 2.9151 32 1 3.3981 -1.9507 2.2724 33 1 3.6924 -0.3259 4.8398 34 1 2.1688 -0.9851 4.1978 35 1 2.1044 -1.9070 7.7623 36 1 5.0523 0.6502 -1.4647 37 1 3.3732 0.6894 -2.0887 38 1 3.3465 3.0997 -2.1765 39 1 5.0315 2.7379 -2.6716 40 1 4.6161 4.3955 -0.5877 41 1 5.8869 3.1395 -0.4559 42 1 3.1555 3.2412 0.8190 43 1 4.6597 2.4919 1.4248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159284400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = -110.824212 kcal Electronic energy + Delta-G solvation = -21936.652191 eV Core-core repulsion = 18787.831334 eV Total energy + Delta-G solvation = -3148.820857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25224 -39.87783 -37.71115 -36.80286 -35.29345 -33.09475 -30.38011 -29.86483 -28.85982 -28.12968 -26.27516 -23.96532 -23.49466 -22.05552 -21.44543 -20.20497 -18.75554 -18.42670 -17.99616 -17.62030 -16.69658 -16.46607 -16.21935 -15.83459 -15.54939 -14.97252 -14.55187 -14.34998 -14.27933 -13.92431 -13.74945 -13.40981 -13.07474 -12.98075 -12.76274 -12.68486 -12.64107 -12.46991 -12.24656 -12.14041 -12.05601 -11.99464 -11.79387 -11.62049 -11.40923 -11.37032 -11.23855 -11.07515 -10.54936 -9.34761 -8.19433 -6.30699 1.00974 1.40806 1.42486 1.53911 1.70536 2.41428 2.70332 3.13865 3.41387 3.49940 3.75003 3.98378 4.12741 4.20524 4.22027 4.25926 4.27718 4.40154 4.44913 4.59013 4.60411 4.63925 4.68199 4.69728 4.78231 4.89898 4.93937 4.99059 5.06880 5.15018 5.15921 5.19579 5.26295 5.30857 5.44055 5.52922 5.72438 5.85393 5.91582 6.01668 6.26186 6.66132 6.85997 7.38740 8.92776 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.004513 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.678888 B = 6202.926473 C = 6741.447286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.475 3.525 4 O -0.535 6.535 5 C 0.113 3.887 6 N -0.522 5.522 7 C 0.015 3.985 8 C 0.067 3.933 9 C -0.081 4.081 10 C 0.026 3.974 11 C -0.539 4.539 12 H 0.062 0.938 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.262 1.262 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.154 4.154 23 H 0.125 0.875 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.053 0.947 33 H -0.012 1.012 34 H -0.016 1.016 35 H 0.263 0.737 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 7.211 -19.250 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.264 6.264 3 C 0.319 3.681 4 O -0.424 6.424 5 C 0.022 3.978 6 N -0.247 5.247 7 C -0.131 4.131 8 C -0.060 4.060 9 C -0.119 4.119 10 C -0.012 4.012 11 C -0.577 4.577 12 H 0.080 0.920 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.791 3.209 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.186 1.186 19 C -0.142 4.142 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.193 4.193 23 H 0.143 0.857 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.007 0.993 34 H 0.003 0.997 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.304 7.067 -19.321 21.019 hybrid contribution -0.608 0.227 1.566 1.695 sum 3.696 7.294 -17.756 19.548 Atomic orbital electron populations 1.23531 0.75547 1.05491 1.02245 1.86662 1.24268 1.32660 1.82852 1.23906 0.92401 0.81144 0.70692 1.90606 1.67383 1.37220 1.47190 1.21870 0.85585 0.91857 0.98524 1.62251 1.07775 1.42440 1.12193 1.22668 0.85237 1.01565 1.03659 1.22065 0.97841 0.97835 0.88294 1.21302 1.00262 0.95410 0.94954 1.18970 0.94186 0.95609 0.92392 1.21662 1.35115 1.01331 0.99568 0.91970 1.26008 0.94775 1.00855 0.98266 1.70110 1.38855 1.35751 1.12928 0.85422 0.77939 0.79270 0.78272 1.19632 1.20854 1.18590 1.22588 1.03043 0.98876 0.89721 1.22559 1.01833 0.93288 0.98102 1.22295 0.99965 0.99785 0.92782 1.22882 1.01190 0.94738 1.00456 0.85659 0.93086 0.90873 0.90826 0.88127 0.94628 0.93749 0.95274 0.92258 0.92812 0.99312 0.99729 0.92831 0.87010 0.90983 0.92357 0.87934 0.90645 0.89370 0.91976 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.35 -11.14 9.53 -51.40 -0.49 -11.63 16 3 C 0.47 15.17 5.11 71.24 0.36 15.53 16 4 O -0.53 -18.88 15.24 21.96 0.33 -18.55 16 5 C 0.11 2.99 0.58 3.50 0.00 2.99 16 6 N -0.52 -15.26 4.39 -872.75 -3.83 -19.10 16 7 C 0.02 0.35 8.62 127.69 1.10 1.46 16 8 C 0.07 2.50 4.19 86.30 0.36 2.86 16 9 C -0.08 -3.49 5.19 30.59 0.16 -3.33 16 10 C 0.03 1.43 4.97 29.85 0.15 1.57 16 11 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 12 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 13 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 14 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 15 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 19 C -0.10 -2.01 5.83 31.70 0.18 -1.83 16 20 C -0.12 -1.89 6.91 31.91 0.22 -1.67 16 21 C -0.11 -1.88 6.83 31.67 0.22 -1.66 16 22 C -0.15 -3.80 5.09 31.32 0.16 -3.64 16 23 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 25 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 26 H 0.07 1.80 6.89 -2.39 -0.02 1.79 16 27 H 0.10 1.68 5.72 -2.39 -0.01 1.66 16 28 H 0.04 0.80 6.34 -2.39 -0.02 0.78 16 29 H 0.04 1.81 5.96 -2.39 -0.01 1.79 16 30 H 0.03 1.09 7.08 -2.39 -0.02 1.07 16 31 H 0.06 2.40 6.86 -2.39 -0.02 2.38 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.33 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 34 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.11 1.75 5.67 -2.38 -0.01 1.73 16 37 H 0.07 1.42 7.83 -2.38 -0.02 1.40 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.82 6.66 -2.39 -0.02 1.81 16 43 H 0.07 1.89 5.21 -2.39 -0.01 1.88 16 Total: -1.00 -70.53 333.43 4.11 -66.42 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.98 Total: 10.54 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 4.81 Total: -16.59 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -3.55 Total: -76.95 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.16 Total: -30.18 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -70.53 4.11 -66.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159284400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.407 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds