Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00437 * 2 1 4 4 C 1.52997 * 109.47356 * 210.00230 * 3 2 1 5 5 C 1.53006 * 109.46974 * 299.99722 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46914 * 174.99639 * 7 6 5 9 9 O 1.21287 * 120.00289 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00253 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99513 * 0.02562 * 10 8 7 12 12 C 1.46498 * 120.00066 * 180.02562 * 10 8 7 13 13 C 1.50698 * 109.47306 * 90.00221 * 12 10 8 14 14 H 1.08003 * 120.00072 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00094 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99895 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99989 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46883 * 60.00280 * 17 15 13 19 19 H 1.48503 * 109.47149 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47305 * 300.00176 * 17 15 13 21 21 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 22 22 C 1.52996 * 109.46975 * 300.00042 * 21 6 5 23 23 H 1.09004 * 109.46897 * 59.99809 * 1 2 3 24 24 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46784 * 299.99719 * 1 2 3 26 26 H 1.09002 * 109.47063 * 330.00242 * 3 2 1 27 27 H 1.09000 * 109.47140 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46922 * 59.99816 * 4 3 2 29 29 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 31 31 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 32 32 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 33 33 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 34 34 H 1.09004 * 109.47149 * 90.00059 * 11 10 8 35 35 H 1.09004 * 109.47119 * 210.00126 * 11 10 8 36 36 H 1.08998 * 109.47536 * 330.00101 * 11 10 8 37 37 H 1.09004 * 109.46948 * 210.00041 * 12 10 8 38 38 H 1.08998 * 109.47080 * 329.99942 * 12 10 8 39 39 H 0.97004 * 119.99431 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47140 * 59.99654 * 21 6 5 41 41 H 1.09001 * 109.47375 * 179.97438 * 21 6 5 42 42 H 1.09004 * 109.47368 * 299.99783 * 22 21 6 43 43 H 1.08996 * 109.47261 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 4.2928 0.2891 0.0000 6 6 4.5001 0.7549 1.4425 7 6 5.4345 -0.2188 2.1635 8 6 5.7369 0.3043 3.5441 9 8 5.2532 1.3530 3.9147 10 7 6.5449 -0.3931 4.3670 11 6 7.1296 -1.6595 3.9192 12 6 6.8384 0.1152 5.7093 13 6 5.8136 -0.4110 6.6809 14 1 5.0225 -1.0589 6.3333 15 6 5.8860 -0.0653 8.0136 16 7 6.8496 0.7233 8.4370 17 14 4.6153 -0.7170 9.2179 18 1 4.6598 -2.2012 9.2294 19 1 4.9129 -0.2018 10.5786 20 1 3.2628 -0.2655 8.8031 21 6 3.1515 0.7972 2.1638 22 6 2.2177 1.7712 1.4425 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.3451 1.9993 -0.5138 27 1 3.8025 2.2588 -0.7209 28 1 3.2111 0.9312 -1.7489 29 1 5.2533 0.2587 -0.5141 30 1 3.8494 -0.7067 0.0000 31 1 4.9435 1.7507 1.4425 32 1 4.9531 -1.1936 2.2417 33 1 6.3627 -0.3161 1.6005 34 1 8.0886 -1.4669 3.4383 35 1 7.2786 -2.3146 4.7776 36 1 6.4566 -2.1393 3.2085 37 1 7.8313 -0.2155 6.0139 38 1 6.8050 1.2046 5.7005 39 1 6.9002 0.9668 9.3746 40 1 2.7081 -0.1986 2.1637 41 1 3.2993 1.1287 3.1916 42 1 2.6611 2.7670 1.4425 43 1 1.2571 1.8017 1.9566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159547122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -104.860093 kcal Electronic energy + Delta-G solvation = -21545.117784 eV Core-core repulsion = 18396.555551 eV Total energy + Delta-G solvation = -3148.562233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73358 -38.60696 -36.17281 -34.65737 -32.62714 -31.70307 -30.61997 -28.21501 -26.90993 -26.26636 -25.36352 -22.84755 -22.52436 -21.09812 -19.49254 -18.18972 -16.50169 -16.29957 -16.25778 -15.68258 -15.38630 -15.26374 -14.66996 -14.31733 -13.89559 -13.76084 -13.34923 -12.95428 -12.68966 -12.27114 -12.20620 -12.16141 -11.84838 -11.83951 -11.62017 -11.30943 -11.15062 -11.11141 -10.95990 -10.78927 -10.54076 -10.34604 -10.15697 -10.09815 -9.91924 -9.59264 -9.41707 -8.65064 -8.39658 -7.54755 -6.00444 -4.05018 3.34081 3.38202 3.40983 3.56653 3.73959 4.08589 4.48094 4.75242 4.78648 4.94358 5.15453 5.15858 5.24962 5.27578 5.33628 5.34963 5.48722 5.53793 5.61720 5.66932 5.68414 5.76486 5.80313 5.92181 5.96219 6.02136 6.06877 6.16391 6.26798 6.30343 6.35612 6.46186 6.78959 6.85903 7.13298 7.18347 7.50146 7.62560 7.96594 8.28652 8.52544 8.95435 9.21301 9.60134 11.07545 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.004518 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.648073 B = 6196.061416 C = 6864.871177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.088 3.912 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.067 4.067 7 C -0.135 4.135 8 C 0.503 3.497 9 O -0.540 6.540 10 N -0.606 5.606 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.114 4.114 22 C -0.137 4.137 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 -2.178 -18.750 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.031 3.969 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.086 4.086 7 C -0.175 4.175 8 C 0.290 3.710 9 O -0.418 6.418 10 N -0.338 5.338 11 C -0.060 4.060 12 C 0.126 3.874 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.151 4.151 22 C -0.175 4.175 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.949 -1.705 -18.360 19.705 hybrid contribution -0.857 -0.257 0.812 1.208 sum -7.807 -1.962 -17.548 19.306 Atomic orbital electron populations 1.22744 0.81825 1.02408 0.99606 1.87926 1.18878 1.27913 1.95027 1.22169 0.94515 0.84271 0.95987 1.21600 0.94210 1.00480 0.98721 1.21511 0.98489 0.99629 0.95112 1.20866 0.95553 0.98927 0.93289 1.21755 1.00640 1.00549 0.94596 1.20412 0.79146 0.84923 0.86485 1.90615 1.50917 1.23609 1.76701 1.48184 1.47110 1.21607 1.16930 1.21615 0.97126 0.86973 1.00281 1.19248 0.95985 0.96226 0.75954 1.21411 1.12270 1.30013 0.92647 0.92580 1.24931 0.95841 0.95092 0.98236 1.69930 1.32151 1.35486 1.15956 0.86574 0.81952 0.79039 0.79944 1.20268 1.21186 1.20213 1.21582 0.93544 0.99170 1.00818 1.21985 1.00175 0.99990 0.95361 0.94529 0.89951 0.94165 0.92825 0.90820 0.91766 0.92346 0.91223 0.90823 0.89661 0.89950 0.93919 0.90971 0.92418 0.95221 0.93918 0.92722 0.92233 0.89468 0.91161 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.61 9.00 -35.23 -0.32 -4.92 16 3 C 0.09 0.99 2.92 -26.73 -0.08 0.92 16 4 C -0.11 -1.18 5.66 -26.73 -0.15 -1.33 16 5 C -0.11 -1.28 5.06 -26.73 -0.14 -1.41 16 6 C -0.07 -0.98 1.84 -90.62 -0.17 -1.14 16 7 C -0.14 -2.06 3.73 -27.88 -0.10 -2.17 16 8 C 0.50 10.58 7.39 -10.99 -0.08 10.50 16 9 O -0.54 -13.48 13.55 5.55 0.08 -13.41 16 10 N -0.61 -13.20 2.86 -182.96 -0.52 -13.72 16 11 C 0.08 1.38 10.24 59.84 0.61 1.99 16 12 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 13 C -0.52 -15.17 9.39 -34.44 -0.32 -15.49 16 14 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.11 -1.80 4.80 -26.73 -0.13 -1.92 16 22 C -0.14 -1.80 5.63 -26.73 -0.15 -1.95 16 23 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 26 H 0.05 0.52 7.79 -51.93 -0.40 0.12 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 31 H 0.07 1.16 7.95 -51.93 -0.41 0.74 16 32 H 0.09 1.21 7.40 -51.93 -0.38 0.83 16 33 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 41 H 0.09 1.71 5.95 -51.93 -0.31 1.40 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -33.10 339.01 -7.28 -40.38 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.61 Total: -1.89 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 0.26 Total: -2.42 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.21 Total: -40.03 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.24 Total: -18.33 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.10 -7.28 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159547122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.475 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds