Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00437 * 2 1 4 4 C 1.52997 * 109.47356 * 210.00230 * 3 2 1 5 5 C 1.53006 * 109.46974 * 299.99722 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46914 * 174.99639 * 7 6 5 9 9 O 1.21287 * 120.00289 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00253 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99513 * 0.02562 * 10 8 7 12 12 C 1.46498 * 120.00066 * 180.02562 * 10 8 7 13 13 C 1.50698 * 109.47306 * 90.00221 * 12 10 8 14 14 H 1.08003 * 120.00072 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00094 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99895 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99989 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46883 * 60.00280 * 17 15 13 19 19 H 1.48503 * 109.47149 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47305 * 300.00176 * 17 15 13 21 21 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 22 22 C 1.52996 * 109.46975 * 300.00042 * 21 6 5 23 23 H 1.09004 * 109.46897 * 59.99809 * 1 2 3 24 24 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46784 * 299.99719 * 1 2 3 26 26 H 1.09002 * 109.47063 * 330.00242 * 3 2 1 27 27 H 1.09000 * 109.47140 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46922 * 59.99816 * 4 3 2 29 29 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 31 31 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 32 32 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 33 33 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 34 34 H 1.09004 * 109.47149 * 90.00059 * 11 10 8 35 35 H 1.09004 * 109.47119 * 210.00126 * 11 10 8 36 36 H 1.08998 * 109.47536 * 330.00101 * 11 10 8 37 37 H 1.09004 * 109.46948 * 210.00041 * 12 10 8 38 38 H 1.08998 * 109.47080 * 329.99942 * 12 10 8 39 39 H 0.97004 * 119.99431 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47140 * 59.99654 * 21 6 5 41 41 H 1.09001 * 109.47375 * 179.97438 * 21 6 5 42 42 H 1.09004 * 109.47368 * 299.99783 * 22 21 6 43 43 H 1.08996 * 109.47261 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2631 -0.7213 5 6 4.2928 0.2891 0.0000 6 6 4.5001 0.7549 1.4425 7 6 5.4345 -0.2188 2.1635 8 6 5.7369 0.3043 3.5441 9 8 5.2532 1.3530 3.9147 10 7 6.5449 -0.3931 4.3670 11 6 7.1296 -1.6595 3.9192 12 6 6.8384 0.1152 5.7093 13 6 5.8136 -0.4110 6.6809 14 1 5.0225 -1.0589 6.3333 15 6 5.8860 -0.0653 8.0136 16 7 6.8496 0.7233 8.4370 17 14 4.6153 -0.7170 9.2179 18 1 4.6598 -2.2012 9.2294 19 1 4.9129 -0.2018 10.5786 20 1 3.2628 -0.2655 8.8031 21 6 3.1515 0.7972 2.1638 22 6 2.2177 1.7712 1.4425 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.3451 1.9993 -0.5138 27 1 3.8025 2.2588 -0.7209 28 1 3.2111 0.9312 -1.7489 29 1 5.2533 0.2587 -0.5141 30 1 3.8494 -0.7067 0.0000 31 1 4.9435 1.7507 1.4425 32 1 4.9531 -1.1936 2.2417 33 1 6.3627 -0.3161 1.6005 34 1 8.0886 -1.4669 3.4383 35 1 7.2786 -2.3146 4.7776 36 1 6.4566 -2.1393 3.2085 37 1 7.8313 -0.2155 6.0139 38 1 6.8050 1.2046 5.7005 39 1 6.9002 0.9668 9.3746 40 1 2.7081 -0.1986 2.1637 41 1 3.2993 1.1287 3.1916 42 1 2.6611 2.7670 1.4425 43 1 1.2571 1.8017 1.9566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159547122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -125.953133 kcal Electronic energy + Delta-G solvation = -21546.032447 eV Core-core repulsion = 18396.555551 eV Total energy + Delta-G solvation = -3149.476896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03308 -39.89538 -37.26811 -36.40396 -34.74058 -32.89284 -31.62952 -30.05068 -28.08441 -27.29636 -26.93182 -24.71304 -23.56442 -22.29785 -20.52071 -19.80807 -18.68950 -17.74104 -17.20131 -17.05614 -16.80221 -16.30969 -16.23531 -16.02057 -15.01614 -14.84209 -14.67521 -14.32670 -13.99759 -13.85931 -13.47472 -13.44162 -13.22964 -13.17737 -12.97212 -12.85035 -12.68886 -12.53804 -12.29305 -12.18024 -12.06996 -11.93751 -11.71936 -11.40047 -11.26007 -10.91877 -10.65197 -10.48968 -10.19119 -9.36134 -8.22869 -6.38126 1.34497 1.38990 1.46403 1.92814 2.33762 2.51759 2.95702 3.05970 3.74213 3.81603 3.85762 4.00085 4.23612 4.26077 4.40062 4.47596 4.51154 4.54176 4.61960 4.63822 4.69472 4.73555 4.75989 4.86945 4.87903 4.95357 4.97605 5.05376 5.09714 5.18906 5.21636 5.26245 5.33261 5.40117 5.55817 5.60462 5.67184 5.87557 6.06802 6.37712 6.69823 6.85572 7.28556 7.57026 8.83791 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.004518 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.648073 B = 6196.061416 C = 6864.871177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.091 3.909 4 C -0.113 4.113 5 C -0.101 4.101 6 C -0.065 4.065 7 C -0.121 4.121 8 C 0.491 3.509 9 O -0.591 6.591 10 N -0.616 5.616 11 C 0.079 3.921 12 C 0.260 3.740 13 C -0.543 4.543 14 H 0.051 0.949 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.279 1.279 21 C -0.110 4.110 22 C -0.137 4.137 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.021 0.979 38 H -0.004 1.004 39 H 0.267 0.733 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -3.842 -20.945 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.033 3.967 4 C -0.150 4.150 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.161 4.161 8 C 0.281 3.719 9 O -0.473 6.473 10 N -0.348 5.348 11 C -0.063 4.063 12 C 0.138 3.862 13 C -0.581 4.581 14 H 0.069 0.931 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.205 1.205 21 C -0.148 4.148 22 C -0.174 4.174 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.039 0.961 38 H 0.014 0.986 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.689 -3.411 -20.588 22.240 hybrid contribution -0.618 0.291 1.504 1.652 sum -8.308 -3.120 -19.084 21.047 Atomic orbital electron populations 1.22907 0.80591 1.03380 1.00274 1.87896 1.20364 1.28296 1.95032 1.22178 0.95657 0.84526 0.94330 1.21648 0.93300 1.00721 0.99368 1.21438 0.99992 0.99625 0.92757 1.20858 0.94188 0.98114 0.95231 1.21781 1.02584 1.00995 0.90717 1.21539 0.77832 0.84185 0.88364 1.90595 1.52567 1.26011 1.78093 1.48249 1.47711 1.23571 1.15246 1.21908 0.99100 0.84469 1.00827 1.18702 0.95175 0.93474 0.78845 1.21676 1.12616 1.30227 0.93623 0.93108 1.25861 0.97919 0.95153 1.00189 1.70049 1.33828 1.36407 1.16594 0.85485 0.78616 0.79275 0.77536 1.18396 1.20123 1.20481 1.21458 0.95328 0.99295 0.98712 1.21977 0.99241 0.99237 0.96987 0.92724 0.88943 0.94601 0.90824 0.90087 0.89814 0.90158 0.91339 0.92482 0.87835 0.86468 0.91120 0.91891 0.88841 0.96131 0.98609 0.92382 0.92702 0.94336 0.91419 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.40 -8.78 9.00 -148.98 -1.34 -10.12 16 3 C 0.09 1.85 2.92 30.59 0.09 1.94 16 4 C -0.11 -2.02 5.66 30.60 0.17 -1.85 16 5 C -0.10 -2.02 5.06 30.60 0.15 -1.87 16 6 C -0.06 -1.81 1.84 -10.79 -0.02 -1.83 16 7 C -0.12 -3.47 3.73 29.85 0.11 -3.36 16 8 C 0.49 21.00 7.39 87.66 0.65 21.65 16 9 O -0.59 -31.20 13.55 -3.05 -0.04 -31.24 16 10 N -0.62 -27.15 2.86 -851.14 -2.43 -29.58 16 11 C 0.08 2.44 10.24 127.77 1.31 3.75 16 12 C 0.26 14.55 5.16 85.63 0.44 14.99 16 13 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.01 0.45 5.46 84.65 0.46 0.91 16 16 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 17 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 C -0.11 -3.55 4.80 30.59 0.15 -3.40 16 22 C -0.14 -3.57 5.63 30.59 0.17 -3.40 16 23 H 0.05 0.70 8.09 -2.38 -0.02 0.68 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 0.61 7.87 -2.38 -0.02 0.59 16 26 H 0.07 1.22 7.79 -2.39 -0.02 1.21 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 31 H 0.06 1.78 7.95 -2.39 -0.02 1.77 16 32 H 0.10 2.64 7.40 -2.39 -0.02 2.62 16 33 H 0.12 2.58 8.11 -2.39 -0.02 2.57 16 34 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 36 H 0.09 2.21 6.44 -2.39 -0.02 2.19 16 37 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 38 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.05 1.76 7.68 -2.39 -0.02 1.74 16 41 H 0.04 1.60 5.95 -2.39 -0.01 1.59 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.43 7.87 -2.39 -0.02 1.41 16 Total: -1.00 -76.06 339.01 4.61 -71.45 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.96 Total: 11.66 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.15 Total: -2.93 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.15 Total: -86.83 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.38 Total: -41.36 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.06 4.61 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159547122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.502 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds