Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46966 * 2 1 4 4 C 1.37096 * 119.99770 * 262.97273 * 3 2 1 5 5 H 1.08005 * 119.99669 * 142.21710 * 4 3 2 6 6 C 1.38950 * 120.00051 * 322.21635 * 4 3 2 7 7 N 1.31417 * 119.99310 * 157.13831 * 6 4 3 8 8 Si 1.86798 * 120.00305 * 337.13692 * 6 4 3 9 9 H 1.48497 * 109.46911 * 95.20253 * 8 6 4 10 10 H 1.48493 * 109.47163 * 215.20561 * 8 6 4 11 11 H 1.48501 * 109.46894 * 335.20713 * 8 6 4 12 12 C 1.34778 * 119.99794 * 82.97661 * 3 2 1 13 13 O 1.21293 * 119.99724 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00296 * 0.02562 * 12 3 2 15 15 C 1.52994 * 109.47243 * 180.02562 * 14 12 3 16 16 C 1.53004 * 109.46780 * 294.99615 * 15 14 12 17 17 C 1.53003 * 109.47181 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47024 * 59.99715 * 17 16 15 19 19 O 1.42904 * 109.46818 * 60.00210 * 18 17 16 20 20 C 1.42898 * 113.99810 * 90.00431 * 19 18 17 21 21 C 1.53004 * 109.47374 * 300.00167 * 18 17 16 22 22 C 1.53001 * 109.47169 * 174.99874 * 15 14 12 23 23 H 1.09002 * 109.46783 * 59.99822 * 1 2 3 24 24 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47177 * 300.00089 * 1 2 3 26 26 H 1.08995 * 109.47007 * 240.00236 * 2 1 3 27 27 H 1.09002 * 109.46783 * 120.00178 * 2 1 3 28 28 H 0.97005 * 119.99365 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47152 * 59.99194 * 14 12 3 30 30 H 1.09007 * 109.46715 * 299.99597 * 14 12 3 31 31 H 1.08997 * 109.47318 * 54.99411 * 15 14 12 32 32 H 1.08997 * 109.47029 * 299.99974 * 16 15 14 33 33 H 1.08995 * 109.47153 * 60.00191 * 16 15 14 34 34 H 1.09004 * 109.46967 * 300.00254 * 17 16 15 35 35 H 1.08998 * 109.47104 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.47116 * 180.02562 * 18 17 16 37 37 H 1.09006 * 109.46895 * 299.99317 * 20 19 18 38 38 H 1.08996 * 109.47680 * 59.99323 * 20 19 18 39 39 H 1.09006 * 109.46748 * 179.97438 * 20 19 18 40 40 H 1.08997 * 109.47029 * 300.00023 * 21 18 17 41 41 H 1.08995 * 109.47153 * 179.97438 * 21 18 17 42 42 H 1.08998 * 109.46839 * 299.99342 * 22 15 14 43 43 H 1.08997 * 109.47379 * 59.99574 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3837 1.9791 -1.1784 5 1 2.1622 3.0228 -1.3458 6 6 3.0391 1.2422 -2.1573 7 7 2.9966 1.6319 -3.4116 8 14 3.9806 -0.3021 -1.6903 9 1 3.1111 -1.4899 -1.8857 10 1 5.1866 -0.4249 -2.5480 11 1 4.3924 -0.2190 -0.2660 12 6 2.1084 2.0642 1.1585 13 8 2.5131 3.2076 1.1585 14 6 1.7073 1.4068 2.4539 15 6 1.9039 2.3917 3.6079 16 6 3.3930 2.7093 3.7593 17 6 3.5897 3.6938 4.9138 18 6 3.0667 3.0712 6.2098 19 8 3.7853 1.8666 6.4833 20 6 4.9582 2.0570 7.2769 21 6 1.5776 2.7536 6.0585 22 6 1.3808 1.7696 4.9042 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.4544 1.1177 -4.0950 29 1 2.3248 0.5241 2.6198 30 1 0.6590 1.1124 2.4025 31 1 1.3559 3.3105 3.3989 32 1 3.9409 1.7906 3.9683 33 1 3.7656 3.1525 2.8358 34 1 3.0416 4.6127 4.7051 35 1 4.6506 3.9197 5.0219 36 1 3.2065 3.7727 7.0322 37 1 5.6424 2.7290 6.7587 38 1 4.6806 2.4911 8.2374 39 1 5.4463 1.0961 7.4403 40 1 1.0296 3.6724 5.8498 41 1 1.2052 2.3096 6.9816 42 1 0.3200 1.5434 4.7963 43 1 1.9288 0.8509 5.1132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159740203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = -93.275214 kcal Electronic energy + Delta-G solvation = -21980.529276 eV Core-core repulsion = 18832.469401 eV Total energy + Delta-G solvation = -3148.059875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62845 -38.55174 -36.19786 -34.97240 -32.34443 -31.47195 -30.54995 -29.63939 -27.31213 -26.35785 -24.29530 -22.84348 -22.46938 -21.26035 -19.44746 -18.49996 -16.83340 -16.24852 -16.17299 -15.72446 -15.37304 -15.33866 -14.40446 -14.21452 -13.81618 -13.53188 -13.27422 -13.04957 -12.81823 -12.49542 -12.32003 -12.20830 -12.12103 -11.79292 -11.69223 -11.31994 -11.15057 -10.98998 -10.96457 -10.78251 -10.63170 -10.30280 -10.08567 -9.98685 -9.83468 -9.77527 -9.34517 -9.00502 -8.27852 -7.65884 -6.34358 -3.89182 3.07171 3.25642 3.31696 3.78399 3.85148 4.20422 4.49733 4.81836 4.85606 4.99023 5.07780 5.20400 5.27333 5.31941 5.42648 5.46595 5.55521 5.57382 5.61828 5.70991 5.76149 5.82732 5.91225 5.94119 6.03150 6.05016 6.12592 6.17443 6.27845 6.31371 6.40786 6.44608 6.49078 6.57901 6.79714 6.91162 6.97647 7.22676 7.62876 8.37204 8.60671 9.06115 9.40900 9.89433 10.78227 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.005027 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.600429 B = 5569.017543 C = 5805.552578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.087 3.913 3 N -0.470 5.470 4 C -0.313 4.313 5 H 0.103 0.897 6 C 0.060 3.940 7 N -0.866 5.866 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.264 1.264 12 C 0.468 3.532 13 O -0.563 6.563 14 C -0.134 4.134 15 C -0.065 4.065 16 C -0.113 4.113 17 C -0.137 4.137 18 C 0.088 3.912 19 O -0.378 6.378 20 C 0.031 3.969 21 C -0.112 4.112 22 C -0.111 4.111 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.272 0.728 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 -2.773 18.463 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.037 4.037 3 N -0.192 5.192 4 C -0.440 4.440 5 H 0.120 0.880 6 C -0.145 4.145 7 N -0.503 5.503 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.188 1.188 12 C 0.256 3.744 13 O -0.445 6.445 14 C -0.175 4.175 15 C -0.084 4.084 16 C -0.150 4.150 17 C -0.175 4.175 18 C 0.031 3.969 19 O -0.297 6.297 20 C -0.066 4.066 21 C -0.150 4.150 22 C -0.148 4.148 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.428 -2.395 18.169 18.381 hybrid contribution 0.708 -0.745 0.119 1.034 sum -0.721 -3.139 18.288 18.569 Atomic orbital electron populations 1.22144 0.96463 1.00896 1.02577 1.21765 0.94551 0.85954 1.01396 1.43814 1.57478 1.11416 1.06517 1.19016 1.36680 0.98418 0.89857 0.87963 1.25346 0.96390 0.98051 0.94741 1.69784 1.40453 1.40342 0.99724 0.87028 0.80348 0.82978 0.79705 1.20302 1.21450 1.18812 1.20318 0.81778 0.87782 0.84475 1.90500 1.49244 1.18386 1.86341 1.21760 1.02095 0.99479 0.94146 1.20828 0.97041 0.98175 0.92373 1.21581 0.95892 0.98911 0.98639 1.21992 1.00652 0.99339 0.95496 1.22175 0.92331 0.86182 0.96226 1.87936 1.38661 1.31247 1.71875 1.22736 0.88073 1.02036 0.93726 1.21590 0.93884 1.00361 0.99142 1.21516 1.00356 0.98891 0.94065 0.91597 0.92786 0.92917 0.90853 0.92301 0.91756 0.90418 0.90295 0.90899 0.92439 0.89408 0.91181 0.92464 0.92895 0.94215 0.94551 0.90004 0.90844 0.91860 0.92395 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.11 37.16 0.38 -2.39 16 2 C 0.09 1.77 4.46 -4.04 -0.02 1.75 16 3 N -0.47 -11.50 2.18 -114.81 -0.25 -11.75 16 4 C -0.31 -8.97 9.35 -14.93 -0.14 -9.11 16 5 H 0.10 3.30 7.92 -52.48 -0.42 2.89 16 6 C 0.06 1.68 5.24 -17.47 -0.09 1.59 16 7 N -0.87 -25.42 13.96 55.50 0.77 -24.64 16 8 Si 0.87 20.94 25.12 -169.99 -4.27 16.68 16 9 H -0.28 -6.16 6.67 56.52 0.38 -5.78 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.47 10.87 7.29 -10.98 -0.08 10.79 16 13 O -0.56 -14.93 13.84 5.55 0.08 -14.86 16 14 C -0.13 -2.36 3.79 -27.89 -0.11 -2.46 16 15 C -0.07 -1.04 1.84 -90.62 -0.17 -1.21 16 16 C -0.11 -1.89 4.80 -26.73 -0.13 -2.02 16 17 C -0.14 -1.87 5.63 -26.73 -0.15 -2.02 16 18 C 0.09 1.05 2.92 -26.73 -0.08 0.97 16 19 O -0.38 -4.84 9.00 -35.23 -0.32 -5.16 16 20 C 0.03 0.30 10.82 101.05 1.09 1.39 16 21 C -0.11 -1.27 5.66 -26.75 -0.15 -1.42 16 22 C -0.11 -1.43 5.06 -26.76 -0.14 -1.56 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.82 6.39 -51.92 -0.33 0.49 16 26 H 0.07 1.59 3.72 -51.93 -0.19 1.40 16 27 H 0.06 1.04 6.74 -51.93 -0.35 0.69 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 30 H 0.08 1.23 6.35 -51.92 -0.33 0.90 16 31 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 32 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 33 H 0.09 1.79 5.95 -51.93 -0.31 1.48 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.05 0.54 7.79 -51.93 -0.40 0.14 16 37 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 38 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.92 7.68 -51.93 -0.40 0.53 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -31.82 326.64 -6.12 -37.94 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.29 Total: 2.56 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.22 Total: -5.70 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.52 Total: -36.39 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.24 Total: -20.01 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.27 Total: 16.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.82 -6.12 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159740203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.332 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds