Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46966 * 2 1 4 4 C 1.37096 * 119.99770 * 262.97273 * 3 2 1 5 5 H 1.08005 * 119.99669 * 142.21710 * 4 3 2 6 6 C 1.38950 * 120.00051 * 322.21635 * 4 3 2 7 7 N 1.31417 * 119.99310 * 157.13831 * 6 4 3 8 8 Si 1.86798 * 120.00305 * 337.13692 * 6 4 3 9 9 H 1.48497 * 109.46911 * 95.20253 * 8 6 4 10 10 H 1.48493 * 109.47163 * 215.20561 * 8 6 4 11 11 H 1.48501 * 109.46894 * 335.20713 * 8 6 4 12 12 C 1.34778 * 119.99794 * 82.97661 * 3 2 1 13 13 O 1.21293 * 119.99724 * 179.97438 * 12 3 2 14 14 C 1.50700 * 120.00296 * 0.02562 * 12 3 2 15 15 C 1.52994 * 109.47243 * 180.02562 * 14 12 3 16 16 C 1.53004 * 109.46780 * 294.99615 * 15 14 12 17 17 C 1.53003 * 109.47181 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47024 * 59.99715 * 17 16 15 19 19 O 1.42904 * 109.46818 * 60.00210 * 18 17 16 20 20 C 1.42898 * 113.99810 * 90.00431 * 19 18 17 21 21 C 1.53004 * 109.47374 * 300.00167 * 18 17 16 22 22 C 1.53001 * 109.47169 * 174.99874 * 15 14 12 23 23 H 1.09002 * 109.46783 * 59.99822 * 1 2 3 24 24 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47177 * 300.00089 * 1 2 3 26 26 H 1.08995 * 109.47007 * 240.00236 * 2 1 3 27 27 H 1.09002 * 109.46783 * 120.00178 * 2 1 3 28 28 H 0.97005 * 119.99365 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47152 * 59.99194 * 14 12 3 30 30 H 1.09007 * 109.46715 * 299.99597 * 14 12 3 31 31 H 1.08997 * 109.47318 * 54.99411 * 15 14 12 32 32 H 1.08997 * 109.47029 * 299.99974 * 16 15 14 33 33 H 1.08995 * 109.47153 * 60.00191 * 16 15 14 34 34 H 1.09004 * 109.46967 * 300.00254 * 17 16 15 35 35 H 1.08998 * 109.47104 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.47116 * 180.02562 * 18 17 16 37 37 H 1.09006 * 109.46895 * 299.99317 * 20 19 18 38 38 H 1.08996 * 109.47680 * 59.99323 * 20 19 18 39 39 H 1.09006 * 109.46748 * 179.97438 * 20 19 18 40 40 H 1.08997 * 109.47029 * 300.00023 * 21 18 17 41 41 H 1.08995 * 109.47153 * 179.97438 * 21 18 17 42 42 H 1.08998 * 109.46839 * 299.99342 * 22 15 14 43 43 H 1.08997 * 109.47379 * 59.99574 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3837 1.9791 -1.1784 5 1 2.1622 3.0228 -1.3458 6 6 3.0391 1.2422 -2.1573 7 7 2.9966 1.6319 -3.4116 8 14 3.9806 -0.3021 -1.6903 9 1 3.1111 -1.4899 -1.8857 10 1 5.1866 -0.4249 -2.5480 11 1 4.3924 -0.2190 -0.2660 12 6 2.1084 2.0642 1.1585 13 8 2.5131 3.2076 1.1585 14 6 1.7073 1.4068 2.4539 15 6 1.9039 2.3917 3.6079 16 6 3.3930 2.7093 3.7593 17 6 3.5897 3.6938 4.9138 18 6 3.0667 3.0712 6.2098 19 8 3.7853 1.8666 6.4833 20 6 4.9582 2.0570 7.2769 21 6 1.5776 2.7536 6.0585 22 6 1.3808 1.7696 4.9042 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.4544 1.1177 -4.0950 29 1 2.3248 0.5241 2.6198 30 1 0.6590 1.1124 2.4025 31 1 1.3559 3.3105 3.3989 32 1 3.9409 1.7906 3.9683 33 1 3.7656 3.1525 2.8358 34 1 3.0416 4.6127 4.7051 35 1 4.6506 3.9197 5.0219 36 1 3.2065 3.7727 7.0322 37 1 5.6424 2.7290 6.7587 38 1 4.6806 2.4911 8.2374 39 1 5.4463 1.0961 7.4403 40 1 1.0296 3.6724 5.8498 41 1 1.2052 2.3096 6.9816 42 1 0.3200 1.5434 4.7963 43 1 1.9288 0.8509 5.1132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159740203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = -114.043124 kcal Electronic energy + Delta-G solvation = -21981.429840 eV Core-core repulsion = 18832.469401 eV Total energy + Delta-G solvation = -3148.960439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03477 -39.93540 -37.46065 -36.67081 -34.36893 -32.77060 -31.62727 -31.28342 -28.68644 -27.28439 -26.09827 -24.40323 -23.56394 -22.51173 -20.58389 -20.24980 -18.81485 -17.80666 -17.45188 -17.13374 -16.70426 -16.22858 -16.04353 -15.77052 -15.04161 -14.87196 -14.78850 -14.44305 -14.34174 -14.01476 -13.94792 -13.43745 -13.20509 -13.09019 -12.89788 -12.79050 -12.65787 -12.52695 -12.21619 -12.09602 -11.94352 -11.90825 -11.61044 -11.33873 -11.23502 -11.04124 -10.89268 -10.38992 -10.07893 -9.65382 -8.51312 -6.10809 1.17371 1.30340 1.42524 2.02624 2.17461 2.75116 2.95653 2.99979 3.80813 3.83699 3.89459 4.03461 4.10432 4.24235 4.28087 4.43565 4.47654 4.51001 4.54029 4.55926 4.63783 4.66031 4.70910 4.76994 4.87119 4.88587 4.93902 5.02627 5.05701 5.10532 5.20460 5.23770 5.33788 5.40274 5.42716 5.57704 5.62377 5.69186 6.06223 6.39006 6.61664 6.99517 7.37021 7.96367 8.66692 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.005027 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.600429 B = 5569.017543 C = 5805.552578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 N -0.483 5.483 4 C -0.330 4.330 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.913 5.913 8 Si 0.944 3.056 9 H -0.238 1.238 10 H -0.289 1.289 11 H -0.262 1.262 12 C 0.458 3.542 13 O -0.608 6.608 14 C -0.123 4.123 15 C -0.063 4.063 16 C -0.110 4.110 17 C -0.136 4.136 18 C 0.091 3.909 19 O -0.397 6.397 20 C 0.025 3.975 21 C -0.112 4.112 22 C -0.102 4.102 23 H 0.036 0.964 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -5.712 21.638 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.045 4.045 3 N -0.206 5.206 4 C -0.458 4.458 5 H 0.058 0.942 6 C -0.189 4.189 7 N -0.551 5.551 8 Si 0.767 3.233 9 H -0.163 1.163 10 H -0.216 1.216 11 H -0.186 1.186 12 C 0.249 3.751 13 O -0.493 6.493 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.148 4.148 17 C -0.173 4.173 18 C 0.034 3.966 19 O -0.317 6.317 20 C -0.072 4.072 21 C -0.150 4.150 22 C -0.139 4.139 23 H 0.055 0.945 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.130 -5.358 21.354 22.119 hybrid contribution 0.928 0.298 -0.892 1.321 sum -1.202 -5.059 20.462 21.113 Atomic orbital electron populations 1.22093 0.93988 1.03343 1.01929 1.22048 0.96732 0.83273 1.02405 1.43992 1.58015 1.13194 1.05389 1.18613 1.38344 0.96475 0.92353 0.94212 1.26110 0.96529 1.02170 0.94094 1.69896 1.41509 1.42674 1.01004 0.85894 0.78752 0.79547 0.79068 1.16295 1.21587 1.18594 1.21437 0.80335 0.87280 0.86060 1.90482 1.50814 1.20716 1.87285 1.21783 1.03940 0.99759 0.90770 1.20825 0.96217 0.97403 0.93765 1.21459 0.96511 0.99115 0.97671 1.21976 1.00954 0.98631 0.95769 1.22176 0.92601 0.86462 0.95404 1.87904 1.39604 1.31647 1.72503 1.22909 0.87257 1.02848 0.94144 1.21634 0.93520 1.00487 0.99337 1.21438 1.01244 0.98850 0.92374 0.94500 0.88683 0.91389 0.92208 0.88630 0.91188 0.88533 0.87354 0.92736 0.92760 0.94140 0.91443 0.92427 0.90669 0.94491 0.92720 0.88981 0.90139 0.89790 0.90431 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 10.11 71.98 0.73 -4.13 16 2 C 0.08 2.96 4.46 86.38 0.39 3.35 16 3 N -0.48 -23.93 2.18 -635.52 -1.39 -25.31 16 4 C -0.33 -19.95 9.35 84.04 0.79 -19.16 16 5 H 0.04 2.82 7.92 -2.91 -0.02 2.80 16 6 C 0.01 0.73 5.24 84.93 0.45 1.18 16 7 N -0.91 -55.70 13.96 21.66 0.30 -55.40 16 8 Si 0.94 43.14 25.12 68.60 1.72 44.87 16 9 H -0.24 -9.45 6.67 99.48 0.66 -8.79 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 12 C 0.46 21.65 7.29 87.66 0.64 22.29 16 13 O -0.61 -34.19 13.84 -3.07 -0.04 -34.23 16 14 C -0.12 -4.05 3.79 29.85 0.11 -3.94 16 15 C -0.06 -1.94 1.84 -10.79 -0.02 -1.95 16 16 C -0.11 -3.70 4.80 30.60 0.15 -3.55 16 17 C -0.14 -3.63 5.63 30.60 0.17 -3.45 16 18 C 0.09 1.93 2.92 30.60 0.09 2.02 16 19 O -0.40 -9.06 9.00 -148.98 -1.34 -10.40 16 20 C 0.02 0.41 10.82 113.37 1.23 1.64 16 21 C -0.11 -2.16 5.66 30.58 0.17 -1.99 16 22 C -0.10 -2.27 5.06 30.58 0.15 -2.11 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 1.89 6.39 -2.38 -0.02 1.88 16 26 H 0.06 2.44 3.72 -2.39 -0.01 2.43 16 27 H 0.10 2.94 6.74 -2.39 -0.02 2.92 16 28 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 29 H 0.10 2.87 7.42 -2.39 -0.02 2.85 16 30 H 0.11 2.95 6.35 -2.38 -0.02 2.94 16 31 H 0.05 1.87 7.96 -2.39 -0.02 1.85 16 32 H 0.05 1.81 7.68 -2.39 -0.02 1.79 16 33 H 0.04 1.73 5.95 -2.39 -0.01 1.72 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.06 1.49 7.87 -2.39 -0.02 1.48 16 36 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16 37 H 0.04 0.63 7.87 -2.38 -0.02 0.61 16 38 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.57 7.68 -2.39 -0.02 1.55 16 Total: -1.00 -75.53 326.64 5.22 -70.31 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.93 Total: 20.00 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.04 Total: -9.83 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.09 Total: -80.71 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.38 Total: -44.63 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.72 Total: 44.87 kcal Total: -75.53 5.22 -70.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159740203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.736 kcal (2) G-P(sol) polarization free energy of solvation -75.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds