Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.52996 * 109.47298 * 180.27351 * 6 4 3 8 8 C 1.53005 * 109.46952 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.50598 * 305.00087 * 8 7 6 10 10 C 1.53124 * 109.50168 * 65.08349 * 8 7 6 11 11 C 1.53116 * 109.15930 * 177.59531 * 10 8 7 12 12 C 1.53040 * 109.27797 * 302.34494 * 11 10 8 13 13 N 1.46845 * 109.52438 * 59.17997 * 12 11 10 14 14 C 1.46899 * 111.00013 * 174.16125 * 13 12 11 15 15 C 1.50700 * 109.47237 * 293.95342 * 14 13 12 16 16 H 1.08000 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99903 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47007 * 90.00139 * 19 17 15 21 21 H 1.48505 * 109.46883 * 210.00216 * 19 17 15 22 22 H 1.48496 * 109.46925 * 330.00070 * 19 17 15 23 23 C 1.46847 * 111.23442 * 298.27668 * 13 12 11 24 24 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 25 25 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 27 27 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 28 28 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 29 29 H 1.09000 * 109.47190 * 300.28287 * 6 4 3 30 30 H 1.09006 * 109.46468 * 60.27870 * 6 4 3 31 31 H 1.08994 * 109.47515 * 300.00215 * 7 6 4 32 32 H 1.09006 * 109.46938 * 60.00806 * 7 6 4 33 33 H 1.08994 * 109.51943 * 297.49753 * 10 8 7 34 34 H 1.08996 * 109.52156 * 57.68867 * 10 8 7 35 35 H 1.08994 * 109.50824 * 62.28428 * 11 10 8 36 36 H 1.08999 * 109.50049 * 182.36688 * 11 10 8 37 37 H 1.09001 * 109.46060 * 179.19899 * 12 11 10 38 38 H 1.09006 * 109.46172 * 299.16286 * 12 11 10 39 39 H 1.09001 * 109.47189 * 53.95039 * 14 13 12 40 40 H 1.09002 * 109.46899 * 173.95714 * 14 13 12 41 41 H 0.97003 * 119.99614 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.42998 * 301.69060 * 23 13 12 43 43 H 1.08999 * 109.50018 * 181.71306 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 5.4485 2.8574 -0.0107 8 6 6.0333 4.2713 -0.0165 9 1 5.6250 4.8305 -0.8583 10 6 5.6710 4.9796 1.2918 11 6 6.3101 6.3710 1.3036 12 6 7.8251 6.2326 1.1376 13 7 8.1198 5.5497 -0.1286 14 6 9.5654 5.5221 -0.3878 15 6 10.0621 6.9268 -0.6141 16 1 9.3729 7.7570 -0.5693 17 6 11.3967 7.1521 -0.8772 18 7 12.2361 6.1411 -0.9312 19 14 12.0125 8.8934 -1.1569 20 1 12.4236 9.4874 0.1404 21 1 13.1760 8.8648 -2.0793 22 1 10.9272 9.7122 -1.7545 23 6 7.5563 4.1938 -0.1452 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5816 3.4668 -0.8963 30 1 3.5877 3.4723 0.8837 31 1 5.7875 2.3281 0.8798 32 1 5.7815 2.3225 -0.9002 33 1 4.5879 5.0756 1.3662 34 1 6.0451 4.3998 2.1356 35 1 5.9067 6.9637 0.4826 36 1 6.0907 6.8642 2.2505 37 1 8.2817 7.2224 1.1313 38 1 8.2297 5.6515 1.9664 39 1 10.0801 5.0885 0.4696 40 1 9.7642 4.9193 -1.2740 41 1 13.1749 6.2997 -1.1167 42 1 7.9626 3.6220 0.6892 43 1 7.8169 3.7029 -1.0828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162088187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = -113.197998 kcal Electronic energy + Delta-G solvation = -20581.971047 eV Core-core repulsion = 17433.047255 eV Total energy + Delta-G solvation = -3148.923792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65270 -38.62827 -36.91080 -34.78067 -32.82791 -32.05594 -31.50694 -29.70971 -26.91783 -25.17504 -23.79124 -22.99648 -21.88183 -21.11413 -20.03513 -19.22441 -17.81539 -16.96582 -16.47512 -16.18119 -15.19685 -15.07136 -14.36766 -14.18935 -13.88345 -13.83447 -13.64355 -13.29359 -13.13072 -12.80438 -12.30306 -12.20238 -12.12633 -11.92432 -11.77109 -11.59275 -11.15237 -11.04768 -10.80094 -10.77064 -10.65389 -10.56585 -10.53555 -10.26424 -10.05696 -9.93400 -9.52809 -9.10179 -8.41098 -7.16626 -5.99915 -4.01151 2.07379 2.47338 3.33259 3.39381 3.43820 4.43117 4.48309 4.58492 4.65836 4.70135 4.85677 4.92887 5.02462 5.20400 5.26780 5.30005 5.35638 5.40467 5.41671 5.46325 5.61430 5.74901 5.86642 5.90641 5.98333 6.02763 6.17120 6.23163 6.28176 6.31310 6.34470 6.50923 6.62272 6.80219 6.81641 7.35876 7.40139 7.60660 7.84115 8.14673 8.27006 8.60564 9.06787 9.62896 11.10977 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047026 B = 0.002928 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.275962 B = 9561.904118 C = 9896.181383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.460 3.540 5 O -0.508 6.508 6 C -0.112 4.112 7 C -0.103 4.103 8 C -0.083 4.083 9 H 0.079 0.921 10 C -0.115 4.115 11 C -0.117 4.117 12 C 0.064 3.936 13 N -0.537 5.537 14 C 0.193 3.807 15 C -0.506 4.506 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.062 3.938 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.017 0.983 39 H -0.011 1.011 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.021 0.979 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.777 -8.428 3.560 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.395 6.395 6 C -0.150 4.150 7 C -0.141 4.141 8 C -0.102 4.102 9 H 0.098 0.902 10 C -0.153 4.153 11 C -0.155 4.155 12 C -0.065 4.065 13 N -0.262 5.262 14 C 0.068 3.932 15 C -0.544 4.544 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.066 4.066 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.007 0.993 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.595 -8.523 3.145 23.428 hybrid contribution 0.915 0.160 0.495 1.052 sum -20.680 -8.364 3.639 22.602 Atomic orbital electron populations 1.21806 0.92670 1.02930 1.03539 1.23007 0.95332 0.80445 1.02588 1.86518 1.25019 1.32245 1.84198 1.24035 0.80271 0.93300 0.72071 1.90679 1.60349 1.43381 1.45122 1.21533 0.97360 0.90134 1.05969 1.21477 0.91066 0.97843 1.03712 1.21207 0.96351 0.94087 0.98531 0.90231 1.21684 0.99423 0.96885 0.97285 1.21622 0.96611 0.96315 1.00970 1.21939 0.93918 1.00284 0.90335 1.61991 1.17525 1.14718 1.31930 1.19701 0.80151 0.97702 0.95638 1.21169 0.92962 0.92739 1.47550 0.91866 1.25006 0.96876 0.97188 0.95675 1.69967 1.03678 1.30367 1.49873 0.86503 0.78366 0.84616 0.77964 1.20784 1.21288 1.19775 1.21991 0.92827 0.91652 1.00158 0.91443 0.90300 0.91482 0.91265 0.91307 0.87526 0.87529 0.91198 0.90892 0.92485 0.92570 0.91468 0.92524 0.90003 0.96491 0.99270 0.95241 0.92966 0.96108 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.78 10.22 -39.24 -0.40 -4.18 16 4 C 0.46 5.36 7.96 36.00 0.29 5.65 16 5 O -0.51 -7.46 15.73 -18.76 -0.30 -7.75 16 6 C -0.11 -1.10 5.57 -27.89 -0.16 -1.25 16 7 C -0.10 -1.25 3.98 -26.73 -0.11 -1.36 16 8 C -0.08 -1.15 2.35 -90.53 -0.21 -1.37 16 9 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 10 C -0.12 -1.49 4.98 -26.61 -0.13 -1.63 16 11 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 12 C 0.06 1.24 5.30 -3.83 -0.02 1.22 16 13 N -0.54 -11.68 4.64 -236.10 -1.10 -12.78 16 14 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 15 C -0.51 -14.32 8.43 -34.44 -0.29 -14.61 16 16 H 0.06 1.77 7.14 -52.49 -0.37 1.39 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 19 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.06 1.14 4.75 -3.83 -0.02 1.12 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 0.88 6.63 -51.93 -0.34 0.54 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.06 0.60 6.70 -51.93 -0.35 0.25 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.74 6.72 -51.93 -0.35 1.39 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 40 H 0.03 0.83 7.98 -51.93 -0.41 0.42 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -31.92 344.29 -8.92 -40.84 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -7.72 Total: -4.42 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.32 Total: -7.34 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.36 Total: -39.10 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.70 Total: -11.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.92 -8.92 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162088187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.355 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds