Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.52996 * 109.47298 * 180.27351 * 6 4 3 8 8 C 1.53005 * 109.46952 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.50598 * 305.00087 * 8 7 6 10 10 C 1.53124 * 109.50168 * 65.08349 * 8 7 6 11 11 C 1.53116 * 109.15930 * 177.59531 * 10 8 7 12 12 C 1.53040 * 109.27797 * 302.34494 * 11 10 8 13 13 N 1.46845 * 109.52438 * 59.17997 * 12 11 10 14 14 C 1.46899 * 111.00013 * 174.16125 * 13 12 11 15 15 C 1.50700 * 109.47237 * 293.95342 * 14 13 12 16 16 H 1.08000 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00162 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99903 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47007 * 90.00139 * 19 17 15 21 21 H 1.48505 * 109.46883 * 210.00216 * 19 17 15 22 22 H 1.48496 * 109.46925 * 330.00070 * 19 17 15 23 23 C 1.46847 * 111.23442 * 298.27668 * 13 12 11 24 24 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 25 25 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 27 27 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 28 28 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 29 29 H 1.09000 * 109.47190 * 300.28287 * 6 4 3 30 30 H 1.09006 * 109.46468 * 60.27870 * 6 4 3 31 31 H 1.08994 * 109.47515 * 300.00215 * 7 6 4 32 32 H 1.09006 * 109.46938 * 60.00806 * 7 6 4 33 33 H 1.08994 * 109.51943 * 297.49753 * 10 8 7 34 34 H 1.08996 * 109.52156 * 57.68867 * 10 8 7 35 35 H 1.08994 * 109.50824 * 62.28428 * 11 10 8 36 36 H 1.08999 * 109.50049 * 182.36688 * 11 10 8 37 37 H 1.09001 * 109.46060 * 179.19899 * 12 11 10 38 38 H 1.09006 * 109.46172 * 299.16286 * 12 11 10 39 39 H 1.09001 * 109.47189 * 53.95039 * 14 13 12 40 40 H 1.09002 * 109.46899 * 173.95714 * 14 13 12 41 41 H 0.97003 * 119.99614 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.42998 * 301.69060 * 23 13 12 43 43 H 1.08999 * 109.50018 * 181.71306 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 5.4485 2.8574 -0.0107 8 6 6.0333 4.2713 -0.0165 9 1 5.6250 4.8305 -0.8583 10 6 5.6710 4.9796 1.2918 11 6 6.3101 6.3710 1.3036 12 6 7.8251 6.2326 1.1376 13 7 8.1198 5.5497 -0.1286 14 6 9.5654 5.5221 -0.3878 15 6 10.0621 6.9268 -0.6141 16 1 9.3729 7.7570 -0.5693 17 6 11.3967 7.1521 -0.8772 18 7 12.2361 6.1411 -0.9312 19 14 12.0125 8.8934 -1.1569 20 1 12.4236 9.4874 0.1404 21 1 13.1760 8.8648 -2.0793 22 1 10.9272 9.7122 -1.7545 23 6 7.5563 4.1938 -0.1452 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5816 3.4668 -0.8963 30 1 3.5877 3.4723 0.8837 31 1 5.7875 2.3281 0.8798 32 1 5.7815 2.3225 -0.9002 33 1 4.5879 5.0756 1.3662 34 1 6.0451 4.3998 2.1356 35 1 5.9067 6.9637 0.4826 36 1 6.0907 6.8642 2.2505 37 1 8.2817 7.2224 1.1313 38 1 8.2297 5.6515 1.9664 39 1 10.0801 5.0885 0.4696 40 1 9.7642 4.9193 -1.2740 41 1 13.1749 6.2997 -1.1167 42 1 7.9626 3.6220 0.6892 43 1 7.8169 3.7029 -1.0828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162088187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = -132.633872 kcal Electronic energy + Delta-G solvation = -20582.813849 eV Core-core repulsion = 17433.047255 eV Total energy + Delta-G solvation = -3149.766594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53817 -40.01827 -37.81491 -36.24423 -34.64680 -33.12529 -32.61898 -30.89498 -28.87652 -26.28977 -25.37766 -23.85043 -23.39310 -22.29224 -21.22968 -20.53568 -18.72903 -18.43175 -17.77608 -17.30882 -16.83820 -16.11283 -15.98161 -15.69199 -15.15831 -15.00617 -14.85416 -14.41350 -14.09879 -13.90966 -13.68223 -13.56363 -13.26185 -13.01507 -12.85974 -12.83674 -12.61561 -12.48169 -12.42688 -12.23442 -11.95095 -11.81361 -11.55368 -11.51923 -11.50372 -11.44066 -11.02312 -10.87311 -10.62448 -9.00056 -8.21162 -6.31963 1.19734 1.40559 1.42621 1.54452 1.71459 2.40017 3.10736 3.28497 3.67612 3.81198 3.93707 4.00683 4.04982 4.09661 4.22179 4.27889 4.34933 4.45683 4.54069 4.60486 4.68650 4.74583 4.86064 4.88210 4.90551 4.93563 4.96286 5.01640 5.14947 5.15781 5.18994 5.25750 5.31915 5.35233 5.42918 5.52639 5.60322 5.66795 6.05350 6.37654 6.67178 6.75074 6.85043 7.37985 8.90245 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047026 B = 0.002928 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.275962 B = 9561.904118 C = 9896.181383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.362 6.362 4 C 0.461 3.539 5 O -0.547 6.547 6 C -0.105 4.105 7 C -0.095 4.095 8 C -0.070 4.070 9 H 0.087 0.913 10 C -0.112 4.112 11 C -0.108 4.108 12 C 0.060 3.940 13 N -0.541 5.541 14 C 0.207 3.793 15 C -0.521 4.521 16 H 0.065 0.935 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.974 3.026 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.058 3.942 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.006 0.994 39 H -0.045 1.045 40 H 0.000 1.000 41 H 0.264 0.736 42 H 0.010 0.990 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.536 -7.026 3.953 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.437 6.437 6 C -0.142 4.142 7 C -0.133 4.133 8 C -0.089 4.089 9 H 0.105 0.895 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.068 4.068 13 N -0.266 5.266 14 C 0.080 3.920 15 C -0.560 4.560 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.186 1.186 23 C -0.070 4.070 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.024 0.976 39 H -0.027 1.027 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.399 -7.119 3.548 25.663 hybrid contribution 1.770 -0.365 0.380 1.846 sum -22.629 -7.484 3.927 24.156 Atomic orbital electron populations 1.21818 0.90346 1.04293 1.03817 1.23260 0.97157 0.79522 1.02304 1.86517 1.24219 1.33411 1.83702 1.24389 0.80453 0.93568 0.70924 1.90673 1.61217 1.44745 1.47089 1.21523 0.94934 0.89423 1.08290 1.21310 0.93193 0.96142 1.02657 1.21095 0.92436 0.95562 0.99802 0.89494 1.21713 1.01849 0.95131 0.96205 1.21581 0.92442 0.98068 1.02490 1.22026 0.97698 0.98367 0.88696 1.61956 1.14136 1.16930 1.33543 1.19363 0.83265 0.96461 0.92889 1.21462 0.93508 0.93327 1.47654 0.91651 1.26004 0.97028 1.01970 0.95073 1.70109 1.04120 1.32968 1.50602 0.85317 0.77872 0.78818 0.78219 1.19738 1.20773 1.18637 1.22127 0.96273 0.89528 0.99080 0.91185 0.88430 0.91109 0.91695 0.91595 0.85212 0.84926 0.92213 0.92274 0.88210 0.92674 0.91124 0.89910 0.92288 0.97594 1.02731 0.98214 0.92701 0.97224 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.05 0.79 6.19 71.98 0.45 1.23 16 3 O -0.36 -6.80 10.22 -51.34 -0.52 -7.33 16 4 C 0.46 9.96 7.96 71.23 0.57 10.53 16 5 O -0.55 -15.86 15.73 21.94 0.35 -15.51 16 6 C -0.10 -1.71 5.57 29.85 0.17 -1.54 16 7 C -0.09 -2.17 3.98 30.59 0.12 -2.05 16 8 C -0.07 -1.83 2.35 -10.74 -0.03 -1.86 16 9 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 10 C -0.11 -2.52 4.98 30.67 0.15 -2.36 16 11 C -0.11 -2.95 6.09 30.65 0.19 -2.77 16 12 C 0.06 2.37 5.30 86.33 0.46 2.82 16 13 N -0.54 -24.24 4.64 -900.90 -4.18 -28.43 16 14 C 0.21 11.58 4.72 85.56 0.40 11.99 16 15 C -0.52 -30.38 8.43 25.60 0.22 -30.16 16 16 H 0.07 3.70 7.14 -2.91 -0.02 3.68 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 18 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 19 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 C 0.06 2.18 4.75 86.33 0.41 2.59 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.13 1.53 6.63 -2.38 -0.02 1.51 16 31 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 32 H 0.06 1.52 8.10 -2.38 -0.02 1.50 16 33 H 0.10 1.50 6.70 -2.39 -0.02 1.49 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 2.55 6.72 -2.39 -0.02 2.53 16 38 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 39 H -0.04 -2.76 8.12 -2.39 -0.02 -2.78 16 40 H 0.00 -0.02 7.98 -2.39 -0.02 -0.03 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.01 0.37 8.14 -2.38 -0.02 0.36 16 43 H 0.05 2.13 8.01 -2.39 -0.02 2.11 16 Total: -1.00 -72.28 344.29 3.20 -69.08 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.95 Total: 4.85 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.30 Total: -11.87 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.90 Total: -86.22 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.18 Total: -22.84 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.28 3.20 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162088187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.554 kcal (2) G-P(sol) polarization free energy of solvation -72.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds