Wall clock time and date at job start Mon Mar 30 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99664 * 2 1 4 4 O 1.20819 * 120.00538 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99846 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.46936 * 59.99552 * 5 3 2 7 7 C 1.53000 * 109.47002 * 299.99911 * 5 3 2 8 8 C 1.53004 * 109.47294 * 179.97438 * 5 3 2 9 9 N 1.46898 * 109.46956 * 184.99652 * 8 5 3 10 10 C 1.46898 * 110.99704 * 189.99989 * 9 8 5 11 11 C 1.52995 * 109.47204 * 75.79688 * 10 9 8 12 12 C 1.53004 * 109.47350 * 174.85261 * 11 10 9 13 13 C 1.50700 * 109.47357 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99912 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00146 * 179.97438 * 13 12 11 16 16 N 1.31523 * 119.99812 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46994 * 90.00351 * 17 15 13 19 19 H 1.48500 * 109.46999 * 210.00123 * 17 15 13 20 20 H 1.48495 * 109.47138 * 329.99789 * 17 15 13 21 21 C 1.46901 * 110.99835 * 66.04644 * 9 8 5 22 22 C 1.52995 * 117.50306 * 254.15341 * 21 9 8 23 23 C 1.53000 * 117.49835 * 185.49311 * 21 9 8 24 24 H 1.09005 * 109.47151 * 299.99636 * 1 2 3 25 25 H 1.09001 * 109.47347 * 60.00254 * 1 2 3 26 26 H 1.08998 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47494 * 59.99810 * 7 5 3 28 28 H 1.08994 * 109.47242 * 180.02562 * 7 5 3 29 29 H 1.09009 * 109.46958 * 300.00179 * 7 5 3 30 30 H 1.08999 * 109.46701 * 64.99999 * 8 5 3 31 31 H 1.08997 * 109.46871 * 304.99765 * 8 5 3 32 32 H 1.09000 * 109.47344 * 315.79248 * 10 9 8 33 33 H 1.09008 * 109.47048 * 195.79555 * 10 9 8 34 34 H 1.09002 * 109.47542 * 54.84766 * 11 10 9 35 35 H 1.09003 * 109.47106 * 294.85153 * 11 10 9 36 36 H 1.09003 * 109.46928 * 300.00001 * 12 11 10 37 37 H 1.09002 * 109.47203 * 59.99297 * 12 11 10 38 38 H 0.97000 * 119.99828 * 179.97438 * 16 15 13 39 39 H 1.09003 * 115.55140 * 39.82849 * 21 9 8 40 40 H 1.09003 * 117.49293 * 0.02562 * 22 21 9 41 41 H 1.09001 * 117.50406 * 145.01889 * 22 21 9 42 42 H 1.09001 * 117.49694 * 214.98229 * 23 21 9 43 43 H 1.08994 * 117.49923 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5811 1.2483 8 6 4.0001 2.7422 -0.0011 9 7 5.4620 2.8205 -0.1223 10 6 5.9368 4.1910 0.1104 11 6 5.8962 4.4972 1.6088 12 6 6.5098 5.8753 1.8646 13 6 6.4693 6.1773 3.3405 14 1 6.0484 5.4580 4.0274 15 6 6.9704 7.3712 3.8139 16 7 7.4834 8.2469 2.9773 17 14 6.9208 7.7452 5.6434 18 1 8.1677 7.2541 6.2830 19 1 6.8051 9.2118 5.8459 20 1 5.7501 7.0671 6.2557 21 6 5.9091 2.3233 -1.4303 22 6 6.5813 0.9496 -1.4719 23 6 7.4168 2.2170 -1.6679 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.8048 -0.4641 1.2483 28 1 5.2023 0.6386 1.2482 29 1 3.7244 1.0751 2.1386 30 1 3.6870 3.2139 0.9303 31 1 3.5376 3.2574 -0.8429 32 1 5.2949 4.8932 -0.4215 33 1 6.9601 4.2875 -0.2526 34 1 6.4643 3.7405 2.1500 35 1 4.8620 4.4904 1.9532 36 1 7.5440 5.8822 1.5202 37 1 5.9417 6.6321 1.3235 38 1 7.8356 9.0871 3.3104 39 1 5.2846 2.6039 -2.2785 40 1 6.6914 0.4144 -0.5286 41 1 6.3993 0.3264 -2.3474 42 1 7.7841 2.4273 -2.6724 43 1 8.0769 2.5164 -0.8538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170820310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:03 Heat of formation + Delta-G solvation = -74.909248 kcal Electronic energy + Delta-G solvation = -21011.940437 eV Core-core repulsion = 17864.676970 eV Total energy + Delta-G solvation = -3147.263467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69966 -38.69021 -36.66431 -35.10502 -34.18642 -32.67231 -30.64885 -27.98231 -26.82750 -25.50962 -23.66823 -22.83327 -22.14238 -20.72890 -20.03366 -19.45173 -17.68978 -16.90219 -16.50636 -16.17767 -16.04260 -15.28595 -14.45046 -14.39126 -14.28774 -14.02782 -13.31057 -13.25367 -12.75023 -12.58439 -12.32748 -12.17268 -12.01726 -11.96026 -11.52077 -11.34305 -11.16768 -11.00852 -10.94668 -10.76056 -10.59160 -10.50705 -10.37392 -10.24812 -10.09555 -9.56301 -9.25922 -9.00674 -8.29836 -8.11447 -5.95332 -3.97023 2.11936 2.54618 3.35338 3.41284 3.45195 3.81956 3.98990 4.50667 4.59558 4.77172 4.89717 4.90114 4.97801 5.00177 5.01277 5.24613 5.28669 5.36749 5.40546 5.49670 5.67688 5.73801 5.78116 5.84541 5.89072 5.98544 6.07423 6.12497 6.19997 6.24803 6.35268 6.38089 6.71287 6.81961 7.17773 7.32747 7.39618 7.64689 7.73668 7.89114 8.05570 8.49030 9.10215 9.66756 11.16174 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.004196 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.721974 B = 6671.685553 C = 7807.321031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.506 6.506 5 C -0.075 4.075 6 H 0.108 0.892 7 C -0.134 4.134 8 C 0.073 3.927 9 N -0.507 5.507 10 C 0.059 3.941 11 C -0.103 4.103 12 C 0.022 3.978 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.001 3.999 22 C -0.169 4.169 23 C -0.171 4.171 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.259 0.741 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 -18.539 -9.915 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.393 6.393 5 C -0.095 4.095 6 H 0.126 0.874 7 C -0.192 4.192 8 C -0.055 4.055 9 N -0.231 5.231 10 C -0.067 4.067 11 C -0.141 4.141 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.108 4.108 22 C -0.206 4.206 23 C -0.208 4.208 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.995 -18.351 -9.555 22.181 hybrid contribution -0.646 0.953 0.298 1.189 sum -8.641 -17.398 -9.257 21.519 Atomic orbital electron populations 1.23249 0.76654 1.03498 1.02562 1.86510 1.23173 1.33689 1.84211 1.23991 0.92263 0.81189 0.71916 1.90684 1.67290 1.36322 1.44955 1.21008 0.85840 0.99607 1.03024 0.87396 1.21679 1.03292 0.99286 0.94911 1.21946 0.87740 0.92844 1.02997 1.61822 1.09988 1.24367 1.26922 1.22310 0.99777 0.85431 0.99232 1.21636 1.00481 1.00142 0.91820 1.19069 0.95783 0.90185 0.96515 1.21252 1.39174 1.02120 0.92942 0.92705 1.25023 0.95468 0.96374 0.97651 1.69972 1.40933 1.08618 1.34144 0.86609 0.78398 0.77343 0.85752 1.20684 1.21287 1.19895 1.22465 0.95574 1.00816 0.91957 1.23098 1.03986 0.90630 1.02926 1.23032 0.93177 1.01860 1.02729 0.91870 0.92037 0.88220 0.92192 0.89571 0.92264 0.89131 0.94043 0.95049 0.90798 0.92558 0.93641 0.96645 0.96845 0.93089 0.89963 0.88109 0.89264 0.89004 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.98 10.47 -39.24 -0.41 -4.39 16 3 C 0.46 6.00 7.25 36.01 0.26 6.26 16 4 O -0.51 -8.04 15.67 -18.74 -0.29 -8.34 16 5 C -0.08 -0.88 2.77 -91.77 -0.25 -1.14 16 6 H 0.11 1.12 6.73 -51.93 -0.35 0.77 16 7 C -0.13 -1.47 9.01 37.16 0.33 -1.13 16 8 C 0.07 1.03 3.52 -3.82 -0.01 1.02 16 9 N -0.51 -7.27 4.02 -226.65 -0.91 -8.18 16 10 C 0.06 1.02 4.95 -3.83 -0.02 1.00 16 11 C -0.10 -2.15 5.19 -26.73 -0.14 -2.29 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.00 0.01 4.17 -67.71 -0.28 -0.27 16 22 C -0.17 -1.69 9.85 -26.70 -0.26 -1.95 16 23 C -0.17 -1.92 9.55 -26.69 -0.26 -2.17 16 24 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 28 H 0.09 0.97 7.48 -51.93 -0.39 0.59 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.46 6.72 -51.93 -0.35 1.11 16 31 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 33 H 0.07 1.28 6.78 -51.92 -0.35 0.93 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.96 6.96 -51.93 -0.36 0.60 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 1.30 7.70 -51.93 -0.40 0.90 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -31.86 352.34 -8.33 -40.19 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.62 Total: -2.39 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.11 Total: -12.57 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.18 Total: -34.82 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.70 Total: -12.73 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.86 -8.33 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170820310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.722 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds