Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45212 * 109.46940 * 2 1 4 4 C 1.34228 * 116.99807 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99822 * 179.97438 * 4 3 2 7 7 C 1.52991 * 109.47485 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47725 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.47304 * 181.72903 * 8 7 6 10 10 C 1.46900 * 111.00030 * 76.25235 * 9 8 7 11 11 C 1.50697 * 109.46877 * 189.99975 * 10 9 8 12 12 H 1.07998 * 120.00274 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00218 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99637 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47080 * 90.00010 * 15 13 11 17 17 H 1.48502 * 109.47028 * 210.00299 * 15 13 11 18 18 H 1.48500 * 109.47206 * 329.99798 * 15 13 11 19 19 C 1.46904 * 110.99655 * 200.20205 * 9 8 7 20 20 C 1.52999 * 109.47009 * 76.57739 * 19 9 8 21 21 C 1.53001 * 117.49779 * 244.79214 * 20 19 9 22 22 C 1.52994 * 60.00244 * 252.50889 * 21 20 19 23 23 H 1.08996 * 109.47152 * 299.99583 * 1 2 3 24 24 H 1.09001 * 109.47531 * 59.99816 * 1 2 3 25 25 H 1.09005 * 109.46620 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47419 * 240.00617 * 2 1 3 27 27 H 1.08993 * 109.47481 * 119.99874 * 2 1 3 28 28 H 1.09004 * 109.46894 * 60.00324 * 6 4 3 29 29 H 1.09010 * 109.47119 * 300.00533 * 6 4 3 30 30 H 1.09004 * 109.47023 * 60.00118 * 7 6 4 31 31 H 1.09002 * 109.47402 * 300.00832 * 7 6 4 32 32 H 1.09000 * 109.46495 * 61.72804 * 8 7 6 33 33 H 1.08994 * 109.47129 * 301.73373 * 8 7 6 34 34 H 1.08998 * 109.46638 * 309.99800 * 10 9 8 35 35 H 1.09001 * 109.47421 * 69.99729 * 10 9 8 36 36 H 0.97003 * 119.99668 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.46755 * 196.57122 * 19 9 8 38 38 H 1.08997 * 109.47321 * 316.57582 * 19 9 8 39 39 H 1.09002 * 115.55016 * 30.49917 * 20 19 9 40 40 H 1.09004 * 117.49902 * 0.02562 * 21 20 19 41 41 H 1.09006 * 117.49761 * 145.01723 * 21 20 19 42 42 H 1.08997 * 117.49836 * 252.51280 * 22 21 20 43 43 H 1.08998 * 117.49995 * 107.48449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4485 2.8576 0.0001 8 6 6.0333 4.2714 0.0002 9 7 7.4997 4.1948 -0.0414 10 6 7.9711 3.8573 -1.3912 11 6 9.4451 3.5472 -1.3455 12 1 9.9784 3.5963 -0.4077 13 6 10.1128 3.2007 -2.5010 14 7 11.3993 2.9305 -2.4612 15 14 9.1901 3.1150 -4.1230 16 1 9.2362 4.4412 -4.7893 17 1 9.8240 2.0980 -4.9999 18 1 7.7765 2.7375 -3.8690 19 6 8.1058 5.4472 0.4300 20 6 8.0224 5.5111 1.9564 21 6 7.1578 6.6137 2.5711 22 6 8.6830 6.7038 2.6507 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.5843 3.4702 0.8896 29 1 3.5850 3.4692 -0.8905 30 1 5.7845 2.3251 -0.8897 31 1 5.7845 2.3257 0.8903 32 1 5.7222 4.7931 0.9053 33 1 5.6728 4.8138 -0.8738 34 1 7.4278 2.9867 -1.7586 35 1 7.7979 4.7018 -2.0583 36 1 11.8689 2.6864 -3.2741 37 1 9.1506 5.4838 0.1214 38 1 7.5703 6.2941 0.0011 39 1 8.0527 4.5499 2.4696 40 1 6.6480 7.2932 1.8880 41 1 6.6189 6.3779 3.4888 42 1 9.1476 6.5274 3.6208 43 1 9.1771 7.4429 2.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174697538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -71.937710 kcal Electronic energy + Delta-G solvation = -20614.481066 eV Core-core repulsion = 17467.346454 eV Total energy + Delta-G solvation = -3147.134611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46653 -38.02686 -36.81657 -35.82375 -33.35676 -32.24941 -31.76963 -28.19842 -27.51421 -24.64878 -23.28248 -22.24342 -21.86362 -20.74127 -20.12071 -19.64648 -17.65446 -16.93644 -16.81059 -16.19821 -15.46948 -15.23368 -14.61236 -14.06501 -14.02247 -13.80273 -13.62772 -13.30455 -13.05597 -12.56637 -12.34081 -12.08554 -12.00807 -11.81110 -11.72817 -11.47465 -11.28293 -11.11985 -10.91272 -10.69001 -10.66589 -10.55059 -10.39368 -10.24495 -9.80070 -9.72634 -9.48172 -9.16593 -8.54394 -7.38246 -6.02344 -3.99099 2.24664 2.60819 3.29739 3.37938 3.40233 4.13811 4.44557 4.57214 4.65607 4.69511 4.78544 5.03541 5.07618 5.10182 5.25134 5.27687 5.30790 5.38436 5.46962 5.51649 5.61457 5.67096 5.75029 5.79610 5.83683 5.90224 6.01743 6.11987 6.28021 6.34420 6.39590 6.42232 6.50289 6.69896 6.79752 6.90997 7.00332 7.65624 7.77893 7.95241 8.09363 8.69027 9.07310 9.59753 11.10821 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.004950 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.967957 B = 5655.449106 C = 7583.778361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.459 3.541 5 O -0.501 6.501 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.056 3.944 9 N -0.525 5.525 10 C 0.160 3.840 11 C -0.508 4.508 12 H 0.082 0.918 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.873 3.127 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.090 3.910 20 C -0.130 4.130 21 C -0.193 4.193 22 C -0.183 4.183 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.032 0.968 35 H -0.018 1.018 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.021 0.979 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.409 1.918 6.847 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.387 6.387 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.073 4.073 9 N -0.248 5.248 10 C 0.034 3.966 11 C -0.546 4.546 12 H 0.100 0.900 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.700 3.300 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.038 4.038 20 C -0.149 4.149 21 C -0.230 4.230 22 C -0.220 4.220 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.000 1.000 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.039 0.961 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.898 1.157 7.032 20.197 hybrid contribution -0.641 0.360 -1.500 1.670 sum -19.539 1.517 5.532 20.364 Atomic orbital electron populations 1.21799 0.92781 1.02856 1.03427 1.22995 0.95204 0.80566 1.02654 1.86509 1.25135 1.32161 1.84417 1.23958 0.80201 0.93305 0.72368 1.90704 1.60235 1.43238 1.44528 1.21441 0.97774 0.90233 1.05412 1.21428 0.89664 0.98331 1.04838 1.22034 0.90168 0.95238 0.99834 1.61786 1.03575 1.31866 1.27565 1.20238 0.97410 0.94711 0.84240 1.21054 0.91316 1.45919 0.96358 0.89996 1.24891 0.94709 0.94987 0.98683 1.69894 1.08222 1.47415 1.28393 0.86898 0.80672 0.78017 0.84386 1.20405 1.21169 1.19175 1.21617 1.01540 0.89688 0.90928 1.22424 1.02530 0.93764 0.96188 1.23022 0.93498 1.03656 1.02802 1.22889 0.94861 1.02120 1.02149 0.91541 0.91525 0.90355 0.91272 0.91275 0.87854 0.87995 0.90642 0.90304 0.91449 0.95687 0.95042 1.00016 0.92712 0.88616 0.96062 0.87253 0.89477 0.89547 0.89241 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.41 10.22 -39.25 -0.40 -4.81 16 4 C 0.46 6.38 7.96 36.01 0.29 6.66 16 5 O -0.50 -8.73 15.73 -18.74 -0.29 -9.02 16 6 C -0.11 -1.31 5.81 -27.89 -0.16 -1.48 16 7 C -0.10 -1.65 4.64 -26.74 -0.12 -1.77 16 8 C 0.06 0.91 4.81 -3.83 -0.02 0.89 16 9 N -0.52 -10.72 4.35 -236.08 -1.03 -11.75 16 10 C 0.16 3.87 3.61 -4.98 -0.02 3.85 16 11 C -0.51 -14.44 8.78 -34.44 -0.30 -14.74 16 12 H 0.08 2.53 7.57 -52.49 -0.40 2.14 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 15 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 19 C 0.09 1.70 5.06 -3.82 -0.02 1.68 16 20 C -0.13 -2.06 5.22 -90.62 -0.47 -2.53 16 21 C -0.19 -2.47 10.04 -26.73 -0.27 -2.73 16 22 C -0.18 -2.48 10.25 -26.73 -0.27 -2.76 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.07 1.39 6.73 -51.93 -0.35 1.04 16 31 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.07 0.96 7.21 -51.93 -0.37 0.58 16 33 H 0.02 0.40 7.99 -51.93 -0.42 -0.02 16 34 H 0.03 0.78 5.69 -51.93 -0.30 0.49 16 35 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.10 2.08 6.58 -51.93 -0.34 1.74 16 38 H 0.02 0.38 7.72 -51.93 -0.40 -0.03 16 39 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -32.23 351.64 -8.80 -41.03 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.62 Total: 0.00 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.86 Total: -10.85 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.25 Total: -38.73 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.70 Total: -13.83 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.23 -8.80 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174697538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.906 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds