Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45212 * 109.46940 * 2 1 4 4 C 1.34228 * 116.99807 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99822 * 179.97438 * 4 3 2 7 7 C 1.52991 * 109.47485 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47725 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.47304 * 181.72903 * 8 7 6 10 10 C 1.46900 * 111.00030 * 76.25235 * 9 8 7 11 11 C 1.50697 * 109.46877 * 189.99975 * 10 9 8 12 12 H 1.07998 * 120.00274 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00063 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00218 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99637 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47080 * 90.00010 * 15 13 11 17 17 H 1.48502 * 109.47028 * 210.00299 * 15 13 11 18 18 H 1.48500 * 109.47206 * 329.99798 * 15 13 11 19 19 C 1.46904 * 110.99655 * 200.20205 * 9 8 7 20 20 C 1.52999 * 109.47009 * 76.57739 * 19 9 8 21 21 C 1.53001 * 117.49779 * 244.79214 * 20 19 9 22 22 C 1.52994 * 60.00244 * 252.50889 * 21 20 19 23 23 H 1.08996 * 109.47152 * 299.99583 * 1 2 3 24 24 H 1.09001 * 109.47531 * 59.99816 * 1 2 3 25 25 H 1.09005 * 109.46620 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47419 * 240.00617 * 2 1 3 27 27 H 1.08993 * 109.47481 * 119.99874 * 2 1 3 28 28 H 1.09004 * 109.46894 * 60.00324 * 6 4 3 29 29 H 1.09010 * 109.47119 * 300.00533 * 6 4 3 30 30 H 1.09004 * 109.47023 * 60.00118 * 7 6 4 31 31 H 1.09002 * 109.47402 * 300.00832 * 7 6 4 32 32 H 1.09000 * 109.46495 * 61.72804 * 8 7 6 33 33 H 1.08994 * 109.47129 * 301.73373 * 8 7 6 34 34 H 1.08998 * 109.46638 * 309.99800 * 10 9 8 35 35 H 1.09001 * 109.47421 * 69.99729 * 10 9 8 36 36 H 0.97003 * 119.99668 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.46755 * 196.57122 * 19 9 8 38 38 H 1.08997 * 109.47321 * 316.57582 * 19 9 8 39 39 H 1.09002 * 115.55016 * 30.49917 * 20 19 9 40 40 H 1.09004 * 117.49902 * 0.02562 * 21 20 19 41 41 H 1.09006 * 117.49761 * 145.01723 * 21 20 19 42 42 H 1.08997 * 117.49836 * 252.51280 * 22 21 20 43 43 H 1.08998 * 117.49995 * 107.48449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4485 2.8576 0.0001 8 6 6.0333 4.2714 0.0002 9 7 7.4997 4.1948 -0.0414 10 6 7.9711 3.8573 -1.3912 11 6 9.4451 3.5472 -1.3455 12 1 9.9784 3.5963 -0.4077 13 6 10.1128 3.2007 -2.5010 14 7 11.3993 2.9305 -2.4612 15 14 9.1901 3.1150 -4.1230 16 1 9.2362 4.4412 -4.7893 17 1 9.8240 2.0980 -4.9999 18 1 7.7765 2.7375 -3.8690 19 6 8.1058 5.4472 0.4300 20 6 8.0224 5.5111 1.9564 21 6 7.1578 6.6137 2.5711 22 6 8.6830 6.7038 2.6507 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.5843 3.4702 0.8896 29 1 3.5850 3.4692 -0.8905 30 1 5.7845 2.3251 -0.8897 31 1 5.7845 2.3257 0.8903 32 1 5.7222 4.7931 0.9053 33 1 5.6728 4.8138 -0.8738 34 1 7.4278 2.9867 -1.7586 35 1 7.7979 4.7018 -2.0583 36 1 11.8689 2.6864 -3.2741 37 1 9.1506 5.4838 0.1214 38 1 7.5703 6.2941 0.0011 39 1 8.0527 4.5499 2.4696 40 1 6.6480 7.2932 1.8880 41 1 6.6189 6.3779 3.4888 42 1 9.1476 6.5274 3.6208 43 1 9.1771 7.4429 2.0200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174697538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -91.815032 kcal Electronic energy + Delta-G solvation = -20615.343011 eV Core-core repulsion = 17467.346454 eV Total energy + Delta-G solvation = -3147.996557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52418 -39.42448 -37.85708 -37.13421 -34.99430 -34.00559 -32.56252 -30.09656 -28.77252 -26.13414 -24.37641 -23.42771 -23.05177 -22.05333 -21.35660 -21.06290 -19.07455 -18.64128 -17.84013 -17.32718 -16.89985 -16.52619 -15.99233 -15.70825 -15.40305 -15.11878 -14.75822 -14.52768 -14.29373 -13.88800 -13.75798 -13.53102 -13.23277 -12.89138 -12.76971 -12.62340 -12.52483 -12.49651 -12.37730 -12.26120 -11.94320 -11.82109 -11.59683 -11.54400 -11.48761 -11.44157 -10.99359 -10.79449 -10.62547 -8.98033 -8.28298 -6.30446 1.18626 1.31216 1.34634 1.44750 1.68543 2.33400 2.97082 3.04585 3.22708 3.70316 3.93471 3.98343 4.03421 4.08665 4.14441 4.16427 4.26539 4.33190 4.44739 4.46489 4.57832 4.68798 4.73175 4.75397 4.84303 4.87732 4.92276 4.93704 5.02454 5.09162 5.14768 5.15522 5.24281 5.34130 5.35856 5.46000 5.49281 5.59626 6.03969 6.45510 6.71212 6.74499 6.76703 7.32751 8.88581 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.004950 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.967957 B = 5655.449106 C = 7583.778361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.460 3.540 5 O -0.547 6.547 6 C -0.100 4.100 7 C -0.099 4.099 8 C 0.059 3.941 9 N -0.545 5.545 10 C 0.172 3.828 11 C -0.513 4.513 12 H 0.037 0.963 13 C 0.007 3.993 14 N -0.949 5.949 15 Si 0.943 3.057 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.253 1.253 19 C 0.097 3.903 20 C -0.156 4.156 21 C -0.160 4.160 22 C -0.182 4.182 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.027 0.973 35 H -0.013 1.013 36 H 0.266 0.734 37 H 0.050 0.950 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.925 3.444 6.943 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.437 6.437 6 C -0.138 4.138 7 C -0.137 4.137 8 C -0.068 4.068 9 N -0.268 5.268 10 C 0.045 3.955 11 C -0.551 4.551 12 H 0.056 0.944 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.767 3.233 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.177 1.177 19 C -0.031 4.031 20 C -0.175 4.175 21 C -0.197 4.197 22 C -0.220 4.220 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.004 0.996 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.455 2.708 7.149 23.720 hybrid contribution 0.480 -0.134 -1.412 1.498 sum -21.975 2.573 5.737 22.857 Atomic orbital electron populations 1.21811 0.90052 1.04330 1.03881 1.23277 0.97321 0.79541 1.02238 1.86509 1.23982 1.33403 1.83789 1.24363 0.80508 0.93572 0.71041 1.90696 1.61307 1.44805 1.46851 1.21410 0.94522 0.89556 1.08283 1.21285 0.92723 0.97436 1.02264 1.22114 0.87100 0.95840 1.01775 1.61684 1.06622 1.33307 1.25228 1.19942 0.94374 0.94519 0.86665 1.21295 0.93695 1.45429 0.94729 0.94444 1.25828 0.95551 0.94609 1.02969 1.70053 1.10189 1.49014 1.29700 0.85770 0.79736 0.78680 0.79116 1.18822 1.20824 1.17651 1.21481 0.98936 0.89448 0.93209 1.22171 1.06859 0.94431 0.94005 1.23106 0.92819 1.00676 1.03060 1.22993 0.96299 1.00433 1.02247 0.90920 0.91165 0.88399 0.91976 0.91592 0.84311 0.85478 0.94057 0.92200 0.88549 0.94333 0.95538 0.99583 0.92513 0.93105 0.94538 0.88791 0.88193 0.87341 0.88021 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.36 -8.01 10.22 -51.40 -0.53 -8.54 16 4 C 0.46 12.18 7.96 71.24 0.57 12.74 16 5 O -0.55 -19.24 15.73 21.99 0.35 -18.90 16 6 C -0.10 -2.10 5.81 29.84 0.17 -1.92 16 7 C -0.10 -3.02 4.64 30.59 0.14 -2.88 16 8 C 0.06 1.81 4.81 86.30 0.41 2.22 16 9 N -0.54 -22.39 4.35 -900.81 -3.92 -26.31 16 10 C 0.17 8.42 3.61 85.56 0.31 8.72 16 11 C -0.51 -30.49 8.78 25.60 0.22 -30.26 16 12 H 0.04 2.49 7.57 -2.91 -0.02 2.46 16 13 C 0.01 0.45 5.47 84.66 0.46 0.91 16 14 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 15 Si 0.94 45.32 27.47 68.60 1.88 47.20 16 16 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 19 C 0.10 3.67 5.06 86.30 0.44 4.11 16 20 C -0.16 -4.80 5.22 -10.79 -0.06 -4.85 16 21 C -0.16 -3.53 10.04 30.59 0.31 -3.22 16 22 C -0.18 -4.66 10.25 30.59 0.31 -4.35 16 23 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 27 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.04 1.53 6.73 -2.39 -0.02 1.51 16 31 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 32 H 0.10 2.39 7.21 -2.39 -0.02 2.37 16 33 H 0.04 1.09 7.99 -2.39 -0.02 1.07 16 34 H 0.03 1.33 5.69 -2.39 -0.01 1.31 16 35 H -0.01 -0.64 7.55 -2.39 -0.02 -0.66 16 36 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.05 2.34 6.58 -2.39 -0.02 2.32 16 38 H 0.04 1.24 7.72 -2.39 -0.02 1.22 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.10 2.00 8.03 -2.39 -0.02 1.99 16 41 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.34 351.64 3.47 -70.87 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.90 Total: 14.43 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.48 Total: -18.28 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -3.62 Total: -86.78 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.18 Total: -27.43 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -74.34 3.47 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174697538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.945 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds