Wall clock time and date at job start Mon Mar 30 2020 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00055 * 2 1 4 4 C 1.53002 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46986 * 175.82359 * 4 3 2 6 6 C 1.50698 * 110.43604 * 61.66741 * 5 4 3 7 7 O 1.21280 * 119.99740 * 242.55408 * 6 5 4 8 8 N 1.34775 * 119.99948 * 62.54765 * 6 5 4 9 9 C 1.46505 * 119.99766 * 174.70307 * 8 6 5 10 10 H 1.09001 * 109.46908 * 324.99804 * 9 8 6 11 11 C 1.52994 * 109.47297 * 85.00556 * 9 8 6 12 12 C 1.50704 * 109.47065 * 205.00343 * 9 8 6 13 13 H 1.07998 * 119.99870 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00026 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99961 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99977 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47252 * 59.99953 * 16 14 12 18 18 H 1.48501 * 109.47042 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46816 * 299.99867 * 16 14 12 20 20 C 1.54889 * 110.59466 * 184.28399 * 5 4 3 21 21 C 1.54890 * 102.74718 * 156.67794 * 20 5 4 22 22 C 1.54267 * 104.19485 * 322.05468 * 21 20 5 23 23 C 1.53876 * 106.59729 * 23.60949 * 22 21 20 24 24 H 1.08996 * 109.47420 * 299.99638 * 1 2 3 25 25 H 1.09006 * 109.47268 * 59.99984 * 1 2 3 26 26 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47191 * 60.00144 * 3 2 1 28 28 H 1.09001 * 109.47233 * 300.00335 * 3 2 1 29 29 H 1.09002 * 109.47188 * 55.82173 * 4 3 2 30 30 H 1.09000 * 109.46579 * 295.82658 * 4 3 2 31 31 H 0.96997 * 120.00695 * 354.70597 * 8 6 5 32 32 H 1.09002 * 109.46983 * 299.99616 * 11 9 8 33 33 H 1.08997 * 109.46909 * 180.02562 * 11 9 8 34 34 H 1.08993 * 109.47454 * 59.99751 * 11 9 8 35 35 H 0.97005 * 120.00129 * 179.97438 * 15 14 12 36 36 H 1.09010 * 110.75395 * 274.98958 * 20 5 4 37 37 H 1.09000 * 110.75774 * 38.35806 * 20 5 4 38 38 H 1.09000 * 110.48546 * 203.37636 * 21 20 5 39 39 H 1.09000 * 110.48895 * 80.73683 * 21 20 5 40 40 H 1.09002 * 110.03299 * 264.32637 * 22 21 20 41 41 H 1.09005 * 110.03034 * 142.89636 * 22 21 20 42 42 H 1.08993 * 110.03538 * 240.71403 * 23 22 21 43 43 H 1.09000 * 110.02811 * 119.28178 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1573 2.5787 -0.1057 6 6 3.7666 3.4200 1.0819 7 8 3.1137 4.4295 0.9213 8 7 4.1424 3.0507 2.3223 9 6 3.8637 3.9263 3.4634 10 1 3.9508 4.9673 3.1522 11 6 2.4455 3.6633 3.9736 12 6 4.8537 3.6468 4.5647 13 1 5.6146 2.8927 4.4282 14 6 4.7886 4.3545 5.7461 15 7 3.8629 5.2739 5.9118 16 14 6.0161 4.0085 7.1110 17 1 7.3925 4.2637 6.6153 18 1 5.7336 4.8960 8.2676 19 1 5.8978 2.5904 7.5353 20 6 5.6991 2.4805 -0.2167 21 6 6.0783 3.8170 -0.9015 22 6 4.9478 4.0519 -1.9246 23 6 3.7265 3.2645 -1.4186 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8518 0.5807 -0.8511 30 1 3.8626 0.7095 0.9242 31 1 4.5975 2.2052 2.4597 32 1 1.7294 3.8656 3.1771 33 1 2.2380 4.3152 4.8222 34 1 2.3585 2.6224 4.2847 35 1 3.8169 5.7716 6.7431 36 1 6.1538 2.4101 0.7715 37 1 5.9885 1.6326 -0.8375 38 1 7.0390 3.7268 -1.4085 39 1 6.1059 4.6256 -0.1710 40 1 5.2493 3.6838 -2.9053 41 1 4.7101 5.1143 -1.9809 42 1 3.4352 2.5143 -2.1536 43 1 2.8960 3.9447 -1.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178077386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:04 Heat of formation + Delta-G solvation = -111.162184 kcal Electronic energy + Delta-G solvation = -22035.344468 eV Core-core repulsion = 18886.508956 eV Total energy + Delta-G solvation = -3148.835512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14380 -37.72691 -36.81963 -34.71105 -32.73312 -32.08884 -29.28034 -28.24835 -27.61620 -25.72783 -25.24223 -22.62050 -22.57843 -20.55461 -19.83983 -18.69927 -16.89493 -16.46007 -16.02099 -15.65952 -15.35986 -15.02105 -14.86920 -14.56353 -13.97017 -13.76003 -13.24158 -13.05313 -12.77112 -12.37736 -12.21544 -11.65718 -11.58498 -11.25590 -11.17967 -11.10622 -11.01910 -10.96135 -10.90009 -10.77482 -10.59906 -10.44033 -10.33049 -10.21776 -10.19753 -9.59379 -9.05432 -8.83970 -8.52893 -7.86848 -6.11304 -4.20598 3.26018 3.31211 3.32232 3.41565 3.73783 4.10412 4.38704 4.61551 4.75746 5.01591 5.15870 5.17810 5.20954 5.34567 5.39833 5.42045 5.51755 5.56494 5.61921 5.64530 5.66095 5.80553 5.89678 5.99655 6.04276 6.07694 6.17411 6.23920 6.37545 6.40266 6.58751 6.84473 6.98871 7.17209 7.18107 7.49203 7.58738 7.71220 7.93339 8.16594 8.71007 8.79933 9.16950 9.47310 10.94564 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005861 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.923480 B = 4776.298159 C = 5695.295778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.058 3.942 4 C -0.099 4.099 5 C -0.084 4.084 6 C 0.516 3.484 7 O -0.553 6.553 8 N -0.707 5.707 9 C 0.267 3.733 10 H 0.046 0.954 11 C -0.146 4.146 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.387 0.613 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -8.123 -13.245 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.018 4.018 4 C -0.137 4.137 5 C -0.087 4.087 6 C 0.301 3.699 7 O -0.432 6.432 8 N -0.354 5.354 9 C 0.165 3.835 10 H 0.064 0.936 11 C -0.205 4.205 12 C -0.572 4.572 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.522 5.522 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.147 4.147 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.220 0.780 32 H 0.033 0.967 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.867 -7.387 -13.176 15.130 hybrid contribution 0.588 -0.319 0.946 1.158 sum -0.279 -7.706 -12.230 14.458 Atomic orbital electron populations 1.22709 0.81225 1.02372 1.00123 1.87812 1.19602 1.28397 1.95507 1.22624 0.93932 0.84252 1.00989 1.21474 0.93280 0.95213 1.03689 1.21646 0.96948 0.94716 0.95424 1.20070 0.79861 0.85694 0.84321 1.90619 1.39882 1.26997 1.85672 1.46495 1.58247 1.23383 1.07310 1.18700 0.92882 0.90255 0.81649 0.93645 1.22063 0.97329 1.00106 1.00997 1.21186 1.14692 1.21794 0.99486 0.92167 1.24881 0.95748 0.94732 0.98304 1.69896 1.32912 1.23054 1.26293 0.86519 0.81342 0.78214 0.81089 1.20177 1.21149 1.20164 1.22557 0.92442 0.98144 1.01565 1.22352 0.97981 0.97610 0.98324 1.22069 0.95014 1.00478 0.98136 1.22158 0.99282 0.99128 0.94152 0.93923 0.94275 0.89844 0.92764 0.92989 0.90328 0.90600 0.78010 0.96711 0.89265 0.95560 0.92554 0.90641 0.90700 0.91690 0.91256 0.92238 0.91804 0.91692 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.62 10.70 -35.23 -0.38 -6.00 16 3 C 0.06 0.85 5.50 37.16 0.20 1.05 16 4 C -0.10 -1.32 4.48 -26.73 -0.12 -1.44 16 5 C -0.08 -1.23 0.47 -154.00 -0.07 -1.30 16 6 C 0.52 10.15 5.23 -10.99 -0.06 10.09 16 7 O -0.55 -12.98 15.08 5.56 0.08 -12.89 16 8 N -0.71 -14.72 4.73 -54.93 -0.26 -14.98 16 9 C 0.27 6.80 2.52 -69.08 -0.17 6.63 16 10 H 0.05 1.34 7.66 -51.93 -0.40 0.94 16 11 C -0.15 -3.68 9.26 37.15 0.34 -3.34 16 12 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 16 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.11 -1.41 5.80 -24.74 -0.14 -1.56 16 21 C -0.13 -1.65 6.61 -25.07 -0.17 -1.81 16 22 C -0.12 -1.51 6.80 -25.61 -0.17 -1.68 16 23 C -0.11 -1.50 4.65 -25.61 -0.12 -1.62 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.92 7.47 -51.93 -0.39 0.53 16 28 H 0.05 0.71 7.02 -51.93 -0.36 0.34 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.02 7.65 -51.93 -0.40 0.63 16 31 H 0.39 7.18 7.75 -40.82 -0.32 6.86 16 32 H 0.01 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.07 1.03 7.53 -51.92 -0.39 0.64 16 37 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.76 7.63 -51.93 -0.40 0.36 16 43 H 0.08 1.33 6.82 -51.93 -0.35 0.98 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -30.26 340.11 -7.09 -37.34 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.50 Total: 6.35 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.24 Total: -6.25 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.37 Total: -39.34 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.29 Total: -18.89 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.26 -7.09 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178077386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.820 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds