Wall clock time and date at job start Mon Mar 30 2020 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00055 * 2 1 4 4 C 1.53002 * 109.47361 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46986 * 175.82359 * 4 3 2 6 6 C 1.50698 * 110.43604 * 61.66741 * 5 4 3 7 7 O 1.21280 * 119.99740 * 242.55408 * 6 5 4 8 8 N 1.34775 * 119.99948 * 62.54765 * 6 5 4 9 9 C 1.46505 * 119.99766 * 174.70307 * 8 6 5 10 10 H 1.09001 * 109.46908 * 324.99804 * 9 8 6 11 11 C 1.52994 * 109.47297 * 85.00556 * 9 8 6 12 12 C 1.50704 * 109.47065 * 205.00343 * 9 8 6 13 13 H 1.07998 * 119.99870 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00026 * 179.97438 * 12 9 8 15 15 N 1.31512 * 119.99961 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99977 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47252 * 59.99953 * 16 14 12 18 18 H 1.48501 * 109.47042 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46816 * 299.99867 * 16 14 12 20 20 C 1.54889 * 110.59466 * 184.28399 * 5 4 3 21 21 C 1.54890 * 102.74718 * 156.67794 * 20 5 4 22 22 C 1.54267 * 104.19485 * 322.05468 * 21 20 5 23 23 C 1.53876 * 106.59729 * 23.60949 * 22 21 20 24 24 H 1.08996 * 109.47420 * 299.99638 * 1 2 3 25 25 H 1.09006 * 109.47268 * 59.99984 * 1 2 3 26 26 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47191 * 60.00144 * 3 2 1 28 28 H 1.09001 * 109.47233 * 300.00335 * 3 2 1 29 29 H 1.09002 * 109.47188 * 55.82173 * 4 3 2 30 30 H 1.09000 * 109.46579 * 295.82658 * 4 3 2 31 31 H 0.96997 * 120.00695 * 354.70597 * 8 6 5 32 32 H 1.09002 * 109.46983 * 299.99616 * 11 9 8 33 33 H 1.08997 * 109.46909 * 180.02562 * 11 9 8 34 34 H 1.08993 * 109.47454 * 59.99751 * 11 9 8 35 35 H 0.97005 * 120.00129 * 179.97438 * 15 14 12 36 36 H 1.09010 * 110.75395 * 274.98958 * 20 5 4 37 37 H 1.09000 * 110.75774 * 38.35806 * 20 5 4 38 38 H 1.09000 * 110.48546 * 203.37636 * 21 20 5 39 39 H 1.09000 * 110.48895 * 80.73683 * 21 20 5 40 40 H 1.09002 * 110.03299 * 264.32637 * 22 21 20 41 41 H 1.09005 * 110.03034 * 142.89636 * 22 21 20 42 42 H 1.08993 * 110.03538 * 240.71403 * 23 22 21 43 43 H 1.09000 * 110.02811 * 119.28178 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1573 2.5787 -0.1057 6 6 3.7666 3.4200 1.0819 7 8 3.1137 4.4295 0.9213 8 7 4.1424 3.0507 2.3223 9 6 3.8637 3.9263 3.4634 10 1 3.9508 4.9673 3.1522 11 6 2.4455 3.6633 3.9736 12 6 4.8537 3.6468 4.5647 13 1 5.6146 2.8927 4.4282 14 6 4.7886 4.3545 5.7461 15 7 3.8629 5.2739 5.9118 16 14 6.0161 4.0085 7.1110 17 1 7.3925 4.2637 6.6153 18 1 5.7336 4.8960 8.2676 19 1 5.8978 2.5904 7.5353 20 6 5.6991 2.4805 -0.2167 21 6 6.0783 3.8170 -0.9015 22 6 4.9478 4.0519 -1.9246 23 6 3.7265 3.2645 -1.4186 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8518 0.5807 -0.8511 30 1 3.8626 0.7095 0.9242 31 1 4.5975 2.2052 2.4597 32 1 1.7294 3.8656 3.1771 33 1 2.2380 4.3152 4.8222 34 1 2.3585 2.6224 4.2847 35 1 3.8169 5.7716 6.7431 36 1 6.1538 2.4101 0.7715 37 1 5.9885 1.6326 -0.8375 38 1 7.0390 3.7268 -1.4085 39 1 6.1059 4.6256 -0.1710 40 1 5.2493 3.6838 -2.9053 41 1 4.7101 5.1143 -1.9809 42 1 3.4352 2.5143 -2.1536 43 1 2.8960 3.9447 -1.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178077386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:04 Heat of formation + Delta-G solvation = -130.852957 kcal Electronic energy + Delta-G solvation = -22036.198324 eV Core-core repulsion = 18886.508956 eV Total energy + Delta-G solvation = -3149.689368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54536 -38.91166 -38.16121 -36.61988 -34.41283 -33.47960 -31.01202 -29.48296 -28.73617 -27.35903 -26.73001 -24.21787 -23.68492 -22.14607 -21.15039 -20.31457 -18.47201 -17.61669 -17.48240 -17.15101 -16.89998 -16.46199 -16.03605 -15.88926 -15.50355 -15.06276 -14.69534 -14.45343 -14.20411 -14.05173 -13.63846 -13.20263 -13.02462 -12.85646 -12.74199 -12.60687 -12.36912 -12.29871 -12.19850 -12.14142 -12.12408 -11.92662 -11.74486 -11.55012 -11.28238 -11.13387 -10.68055 -10.63651 -10.43392 -9.72840 -8.18395 -6.36254 1.43941 1.46213 1.53980 1.84860 2.35023 2.61226 2.73776 3.11815 3.50532 3.65144 3.85983 4.05914 4.12678 4.20812 4.32291 4.46595 4.48177 4.51537 4.55056 4.60617 4.71441 4.73256 4.80264 4.84879 4.88181 4.94755 5.03611 5.05808 5.08131 5.11629 5.16525 5.31570 5.34181 5.42907 5.53508 5.61271 5.67436 5.90367 6.08750 6.14071 6.71640 6.99371 7.31716 7.57765 8.87784 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005861 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.923480 B = 4776.298159 C = 5695.295778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.061 3.939 4 C -0.094 4.094 5 C -0.076 4.076 6 C 0.512 3.488 7 O -0.598 6.598 8 N -0.705 5.705 9 C 0.275 3.725 10 H -0.006 1.006 11 C -0.131 4.131 12 C -0.546 4.546 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.973 3.027 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.109 4.109 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.107 0.893 27 H 0.018 0.982 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.401 0.599 32 H 0.008 0.992 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.030 0.970 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -10.764 -14.615 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.015 4.015 4 C -0.131 4.131 5 C -0.079 4.079 6 C 0.300 3.700 7 O -0.480 6.480 8 N -0.353 5.353 9 C 0.171 3.829 10 H 0.012 0.988 11 C -0.190 4.190 12 C -0.585 4.585 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.797 3.203 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.142 4.142 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.147 4.147 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.745 -10.065 -14.567 17.721 hybrid contribution 0.006 0.547 1.331 1.439 sum 0.751 -9.518 -13.236 16.320 Atomic orbital electron populations 1.22930 0.79852 1.04043 1.00353 1.87785 1.21177 1.27926 1.95506 1.22549 0.94959 0.84347 0.99666 1.21491 0.92174 0.94285 1.05157 1.21637 0.98763 0.94537 0.92952 1.21052 0.78351 0.85500 0.85129 1.90596 1.41724 1.29288 1.86351 1.46256 1.58750 1.23371 1.06894 1.18271 0.93051 0.88528 0.83030 0.98803 1.21875 0.97278 1.00043 0.99820 1.21509 1.15066 1.22118 0.99761 0.90887 1.25814 0.97534 0.94334 1.00891 1.70053 1.34670 1.24028 1.26948 0.85390 0.78828 0.78439 0.77648 1.19423 1.21178 1.18885 1.22632 0.90278 0.99358 1.01917 1.22375 0.99742 0.96566 0.97863 1.22092 0.94265 0.99543 0.99610 1.22193 0.98792 0.99422 0.94274 0.94837 0.92956 0.87493 0.96324 0.92221 0.86955 0.90679 0.76406 0.97256 0.91544 0.94435 0.92559 0.91607 0.86683 0.88840 0.95081 0.88794 0.93522 0.88488 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.76 16 2 O -0.40 -10.82 10.70 -148.98 -1.59 -12.42 16 3 C 0.06 1.71 5.50 71.98 0.40 2.11 16 4 C -0.09 -2.26 4.48 30.60 0.14 -2.12 16 5 C -0.08 -2.11 0.47 -51.85 -0.02 -2.14 16 6 C 0.51 20.72 5.23 87.66 0.46 21.18 16 7 O -0.60 -29.74 15.08 -3.03 -0.05 -29.79 16 8 N -0.70 -30.06 4.73 -446.09 -2.11 -32.17 16 9 C 0.27 14.61 2.52 44.24 0.11 14.72 16 10 H -0.01 -0.37 7.66 -2.39 -0.02 -0.39 16 11 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 12 C -0.55 -29.33 8.73 25.60 0.22 -29.11 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C 0.01 0.77 5.30 84.65 0.45 1.22 16 15 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 16 Si 0.97 42.31 29.54 68.60 2.03 44.33 16 17 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 18 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 20 C -0.10 -2.40 5.80 31.89 0.18 -2.22 16 21 C -0.13 -3.14 6.61 31.67 0.21 -2.93 16 22 C -0.12 -2.74 6.80 31.32 0.21 -2.53 16 23 C -0.11 -2.81 4.65 31.32 0.15 -2.67 16 24 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.02 0.64 7.47 -2.39 -0.02 0.62 16 28 H 0.06 1.55 7.02 -2.39 -0.02 1.53 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16 31 H 0.40 14.78 7.75 -92.71 -0.72 14.06 16 32 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 33 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 36 H 0.07 1.66 7.53 -2.38 -0.02 1.65 16 37 H 0.11 1.82 8.06 -2.39 -0.02 1.80 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.10 1.89 7.63 -2.39 -0.02 1.87 16 43 H 0.05 1.70 6.82 -2.39 -0.02 1.68 16 Total: -1.00 -68.98 340.11 3.20 -65.78 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.26 Total: 26.45 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 4.42 Total: -8.96 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.87 Total: -85.40 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.64 Total: -42.20 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -68.98 3.20 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178077386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.069 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds