Wall clock time and date at job start Mon Mar 30 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99974 * 2 1 4 4 C 1.52998 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47243 * 185.13717 * 4 3 2 6 6 C 1.50693 * 110.43684 * 299.05351 * 5 4 3 7 7 O 1.21281 * 120.00299 * 121.69473 * 6 5 4 8 8 N 1.34778 * 120.00138 * 301.69794 * 6 5 4 9 9 C 1.46495 * 120.00215 * 175.02673 * 8 6 5 10 10 H 1.09006 * 109.47391 * 35.00172 * 9 8 6 11 11 C 1.53001 * 109.47609 * 274.99803 * 9 8 6 12 12 C 1.50707 * 109.47165 * 154.99848 * 9 8 6 13 13 H 1.07996 * 119.99655 * 25.76476 * 12 9 8 14 14 C 1.37877 * 120.00178 * 206.03384 * 12 9 8 15 15 N 1.31505 * 120.00004 * 184.83243 * 14 12 9 16 16 Si 1.86799 * 119.99948 * 4.83277 * 14 12 9 17 17 H 1.48500 * 109.47128 * 94.36697 * 16 14 12 18 18 H 1.48491 * 109.47396 * 214.36798 * 16 14 12 19 19 H 1.48500 * 109.47138 * 334.36865 * 16 14 12 20 20 C 1.54887 * 110.59785 * 61.67481 * 5 4 3 21 21 C 1.54888 * 102.74828 * 156.67766 * 20 5 4 22 22 C 1.54259 * 104.19721 * 322.05235 * 21 20 5 23 23 C 1.53879 * 106.59566 * 23.61050 * 22 21 20 24 24 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47157 * 299.99706 * 1 2 3 26 26 H 1.08999 * 109.47109 * 59.99645 * 1 2 3 27 27 H 1.09008 * 109.46822 * 60.00342 * 3 2 1 28 28 H 1.08999 * 109.47795 * 300.00081 * 3 2 1 29 29 H 1.09002 * 109.46888 * 65.14036 * 4 3 2 30 30 H 1.08997 * 109.47445 * 305.13906 * 4 3 2 31 31 H 0.97009 * 119.99766 * 355.02958 * 8 6 5 32 32 H 1.09008 * 109.46533 * 65.04300 * 11 9 8 33 33 H 1.08999 * 109.47471 * 185.04079 * 11 9 8 34 34 H 1.09005 * 109.47219 * 305.04996 * 11 9 8 35 35 H 0.97000 * 119.99989 * 180.02562 * 15 14 12 36 36 H 1.09003 * 110.75484 * 274.98713 * 20 5 4 37 37 H 1.09002 * 110.76153 * 38.35639 * 20 5 4 38 38 H 1.09001 * 110.48440 * 203.37663 * 21 20 5 39 39 H 1.08992 * 110.48796 * 80.73690 * 21 20 5 40 40 H 1.09002 * 110.03516 * 264.32871 * 22 21 20 41 41 H 1.09003 * 110.03767 * 142.89795 * 22 21 20 42 42 H 1.08999 * 110.03571 * 240.70941 * 23 22 21 43 43 H 1.09006 * 110.02634 * 119.28668 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1572 2.5766 0.1298 6 6 3.7538 3.4433 -1.0351 7 8 3.1688 4.4877 -0.8400 8 7 4.0429 3.0579 -2.2938 9 6 3.5565 3.8437 -3.4305 10 1 3.5579 4.9017 -3.1681 11 6 2.1325 3.4069 -3.7805 12 6 4.4568 3.6196 -4.6181 13 1 5.0219 2.7031 -4.7019 14 6 4.5633 4.5869 -5.5948 15 7 5.2734 4.3536 -6.6767 16 14 3.6989 6.2290 -5.3811 17 1 4.6410 7.2106 -4.7859 18 1 3.2401 6.7228 -6.7042 19 1 2.5284 6.0591 -4.4831 20 6 3.7406 3.2376 1.4672 21 6 4.8701 4.2705 1.7044 22 6 6.1471 3.5523 1.2217 23 6 5.6939 2.4752 0.2206 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6887 1.8465 -0.8899 29 1 3.8639 0.7251 -0.9316 30 1 3.8506 0.5665 0.8412 31 1 4.5732 2.2601 -2.4470 32 1 1.4643 3.6514 -2.9547 33 1 1.8037 3.9270 -4.6802 34 1 2.1151 2.3312 -3.9556 35 1 5.3486 5.0343 -7.3637 36 1 2.7762 3.7358 1.3679 37 1 3.7153 2.5014 2.2706 38 1 4.9472 4.5149 2.7639 39 1 4.6934 5.1709 1.1162 40 1 6.6556 3.0869 2.0661 41 1 6.8121 4.2626 0.7304 42 1 5.9824 1.4871 0.5790 43 1 6.1389 2.6629 -0.7566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178077399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:06 Heat of formation + Delta-G solvation = -131.028542 kcal Electronic energy + Delta-G solvation = -22145.188115 eV Core-core repulsion = 18995.491133 eV Total energy + Delta-G solvation = -3149.696982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58622 -38.91122 -38.19754 -36.62758 -34.47380 -33.54834 -31.56808 -29.55597 -28.76751 -27.32758 -26.73532 -24.19279 -23.65758 -21.86364 -21.26150 -20.56010 -18.76907 -17.71801 -17.49929 -17.24103 -16.95698 -16.29285 -16.11608 -15.78658 -15.49489 -15.06837 -14.83028 -14.58187 -14.37208 -14.20381 -13.87031 -13.39382 -13.13311 -13.09093 -12.83703 -12.63107 -12.42235 -12.40984 -12.19289 -12.11447 -11.90531 -11.85676 -11.73852 -11.54108 -11.28398 -11.25257 -10.85084 -10.65483 -10.49095 -9.78964 -8.39880 -6.45061 1.26071 1.31665 1.43062 1.79573 2.25691 2.45976 2.73473 3.00199 3.49872 3.64251 3.82891 4.06501 4.11950 4.22001 4.35153 4.43704 4.48379 4.48968 4.52833 4.56487 4.58971 4.68115 4.71457 4.79189 4.81629 4.84533 4.96473 5.04419 5.04669 5.08486 5.09947 5.17822 5.29247 5.33746 5.39699 5.43412 5.54251 5.72989 6.12579 6.16348 6.58343 6.91421 7.19999 7.47714 8.75358 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.006529 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.989163 B = 4287.701970 C = 5220.790662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.061 3.939 4 C -0.095 4.095 5 C -0.076 4.076 6 C 0.515 3.485 7 O -0.592 6.592 8 N -0.704 5.704 9 C 0.237 3.763 10 H 0.027 0.973 11 C -0.140 4.140 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.033 3.967 15 N -0.931 5.931 16 Si 0.922 3.078 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.252 1.252 20 C -0.098 4.098 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.112 4.112 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.402 0.598 32 H 0.032 0.968 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.270 0.730 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.107 0.893 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -7.237 18.169 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.016 4.016 4 C -0.132 4.132 5 C -0.079 4.079 6 C 0.302 3.698 7 O -0.473 6.473 8 N -0.352 5.352 9 C 0.133 3.867 10 H 0.045 0.955 11 C -0.199 4.199 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.167 4.167 15 N -0.569 5.569 16 Si 0.747 3.253 17 H -0.202 1.202 18 H -0.200 1.200 19 H -0.176 1.176 20 C -0.135 4.135 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.150 4.150 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.237 0.763 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.125 0.875 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.188 -6.599 18.087 19.704 hybrid contribution -0.260 1.022 -0.963 1.428 sum -4.449 -5.577 17.124 18.551 Atomic orbital electron populations 1.22926 0.79822 1.03982 1.00429 1.87794 1.21200 1.28043 1.95520 1.22564 0.94727 0.84397 0.99889 1.21503 0.92451 0.94337 1.04933 1.21641 0.98281 0.94446 0.93544 1.21042 0.77994 0.86004 0.84721 1.90595 1.44668 1.26250 1.85835 1.46239 1.53858 1.29676 1.05430 1.18826 0.91962 0.91801 0.84141 0.95491 1.22156 0.97080 1.01286 0.99401 1.21193 1.26407 1.04336 1.04565 0.92656 1.25541 0.95299 1.01307 0.94552 1.69980 1.41872 1.35932 1.09148 0.86117 0.80332 0.80700 0.78147 1.20234 1.20010 1.17589 1.22460 0.98648 0.98127 0.94314 1.22338 0.94736 0.97752 1.01475 1.22149 0.97379 0.97257 0.99160 1.22292 0.90718 1.01768 1.00212 0.87721 0.92947 0.94606 0.92161 0.95745 0.90844 0.87237 0.76283 0.94857 0.93333 0.92481 0.92072 0.92427 0.87815 0.89520 0.94419 0.88786 0.93048 0.87483 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -10.36 10.70 -148.98 -1.59 -11.96 16 3 C 0.06 1.58 5.50 71.98 0.40 1.97 16 4 C -0.09 -2.18 4.45 30.59 0.14 -2.04 16 5 C -0.08 -1.99 0.47 -51.86 -0.02 -2.02 16 6 C 0.51 19.23 5.18 87.65 0.45 19.69 16 7 O -0.59 -26.62 14.72 -3.03 -0.04 -26.66 16 8 N -0.70 -28.28 4.71 -446.09 -2.10 -30.38 16 9 C 0.24 11.38 2.13 44.25 0.09 11.48 16 10 H 0.03 1.43 5.04 -2.38 -0.01 1.42 16 11 C -0.14 -6.18 9.08 71.98 0.65 -5.52 16 12 C -0.53 -28.86 9.06 25.60 0.23 -28.62 16 13 H 0.06 3.22 8.02 -2.91 -0.02 3.20 16 14 C 0.03 1.88 5.47 84.66 0.46 2.35 16 15 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 16 Si 0.92 44.86 26.39 68.60 1.81 46.68 16 17 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.25 -11.98 6.02 99.48 0.60 -11.38 16 20 C -0.10 -2.31 4.46 31.88 0.14 -2.17 16 21 C -0.13 -3.00 6.52 31.67 0.21 -2.79 16 22 C -0.12 -2.61 6.80 31.32 0.21 -2.39 16 23 C -0.11 -2.53 5.92 31.32 0.19 -2.35 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 1.44 6.97 -2.38 -0.02 1.43 16 28 H 0.02 0.77 7.49 -2.39 -0.02 0.75 16 29 H 0.07 1.76 7.64 -2.39 -0.02 1.74 16 30 H 0.11 1.93 8.11 -2.39 -0.02 1.92 16 31 H 0.40 14.59 7.92 -92.70 -0.73 13.86 16 32 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.05 2.16 7.01 -2.39 -0.02 2.14 16 34 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.06 1.61 7.14 -2.39 -0.02 1.59 16 37 H 0.10 1.78 8.06 -2.39 -0.02 1.76 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.16 7.64 -2.39 -0.02 1.14 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 1.74 7.82 -2.39 -0.02 1.73 16 43 H 0.05 1.47 7.50 -2.38 -0.02 1.45 16 Total: -1.00 -68.11 336.57 2.90 -65.20 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.14 Total: 23.44 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 4.40 Total: -10.70 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.80 Total: -86.00 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.64 Total: -38.62 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.81 Total: 46.68 kcal Total: -68.11 2.90 -65.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178077399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.825 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds