Wall clock time and date at job start Mon Mar 30 2020 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47325 * 2 1 4 4 C 1.42894 * 114.00005 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47219 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47624 * 182.06760 * 5 4 3 7 7 C 1.50701 * 112.85017 * 293.82250 * 6 5 4 8 8 O 1.21276 * 120.00213 * 114.39747 * 7 6 5 9 9 N 1.34782 * 119.99494 * 294.39676 * 7 6 5 10 10 C 1.46499 * 120.00042 * 174.97851 * 9 7 6 11 11 H 1.09008 * 109.46690 * 325.00127 * 10 9 7 12 12 C 1.53001 * 109.47040 * 84.99376 * 10 9 7 13 13 C 1.50693 * 109.47235 * 204.99930 * 10 9 7 14 14 H 1.08002 * 120.00160 * 0.02562 * 13 10 9 15 15 C 1.37882 * 120.00145 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99773 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00106 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47377 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47142 * 119.99962 * 17 15 13 20 20 H 1.48503 * 109.47284 * 239.99749 * 17 15 13 21 21 C 1.53775 * 113.61530 * 162.50926 * 6 5 4 22 22 C 1.53783 * 87.08186 * 220.02051 * 21 6 5 23 23 C 1.53782 * 113.60932 * 65.01290 * 6 5 4 24 24 H 1.09001 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47080 * 299.99814 * 1 2 3 26 26 H 1.09007 * 109.47037 * 59.99837 * 1 2 3 27 27 H 1.09009 * 109.47217 * 240.00006 * 2 1 3 28 28 H 1.08994 * 109.47141 * 120.00523 * 2 1 3 29 29 H 1.09002 * 109.47233 * 60.00420 * 4 3 2 30 30 H 1.08996 * 109.47755 * 300.00242 * 4 3 2 31 31 H 1.09006 * 109.47087 * 62.06918 * 5 4 3 32 32 H 1.08997 * 109.47316 * 302.07061 * 5 4 3 33 33 H 0.96996 * 120.00125 * 354.97328 * 9 7 6 34 34 H 1.09003 * 109.46940 * 180.02562 * 12 10 9 35 35 H 1.08996 * 109.47665 * 300.00247 * 12 10 9 36 36 H 1.08994 * 109.46629 * 60.00848 * 12 10 9 37 37 H 0.96997 * 120.00109 * 179.97438 * 16 15 13 38 38 H 1.08999 * 113.61820 * 334.56845 * 21 6 5 39 39 H 1.09000 * 113.61507 * 105.47396 * 21 6 5 40 40 H 1.08998 * 113.61698 * 270.88725 * 22 21 6 41 41 H 1.09000 * 113.61472 * 139.97668 * 22 21 6 42 42 H 1.09003 * 113.61299 * 254.52910 * 23 6 5 43 43 H 1.08996 * 113.61825 * 25.43325 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3498 3.0594 -0.0502 7 6 6.0208 2.5344 1.1928 8 8 6.7341 1.5556 1.1296 9 7 5.8282 3.1528 2.3748 10 6 6.3899 2.5806 3.6009 11 1 6.3599 1.4925 3.5410 12 6 7.8395 3.0427 3.7619 13 6 5.5813 3.0408 4.7863 14 1 4.7335 3.6939 4.6410 15 6 5.9231 2.6273 6.0565 16 7 6.9546 1.8309 6.2334 17 14 4.9213 3.1984 7.5260 18 1 3.8218 4.0822 7.0621 19 1 4.3483 2.0190 8.2230 20 1 5.7976 3.9486 8.4612 21 6 5.8430 4.4518 -0.4776 22 6 6.9228 3.7301 -1.3011 23 6 5.9663 2.5271 -1.3547 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9766 0.8907 31 1 3.4537 3.4132 0.9092 32 1 3.3923 3.4303 -0.8696 33 1 5.3178 3.9766 2.4137 34 1 8.2576 2.6165 4.6739 35 1 8.4244 2.7098 2.9045 36 1 7.8694 4.1305 3.8218 37 1 7.1953 1.5403 7.1269 38 1 5.1250 5.0018 -1.0859 39 1 6.2443 5.0443 0.3446 40 1 7.8391 3.5349 -0.7440 41 1 7.1067 4.1852 -2.2743 42 1 6.4671 1.5657 -1.2404 43 1 5.2819 2.5508 -2.2026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178511893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:48 Heat of formation + Delta-G solvation = -85.595529 kcal Electronic energy + Delta-G solvation = -21578.837565 eV Core-core repulsion = 18431.110706 eV Total energy + Delta-G solvation = -3147.726859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36288 -37.87775 -37.07647 -34.70786 -32.54828 -32.20511 -30.33752 -28.88115 -25.71764 -25.24371 -25.07751 -22.75266 -22.47915 -21.37850 -20.05106 -18.66949 -16.73209 -16.55662 -16.15565 -15.72833 -15.34485 -14.90525 -14.60875 -14.39411 -14.04774 -13.68842 -13.38215 -12.77349 -12.45921 -12.43777 -12.34469 -12.30983 -11.93000 -11.66794 -11.36469 -11.08353 -11.03099 -10.96694 -10.95031 -10.74554 -10.71347 -10.29405 -10.23593 -10.11923 -10.04535 -9.48701 -9.05034 -8.89628 -8.54255 -7.88874 -6.12022 -4.21007 3.23823 3.31617 3.34167 3.36991 3.66645 4.05310 4.37632 4.60042 4.73973 4.92497 5.01673 5.03274 5.15439 5.20528 5.27149 5.34033 5.39104 5.52932 5.60095 5.64844 5.74333 5.81092 5.85938 5.88086 5.97829 6.02760 6.05404 6.16144 6.25122 6.38531 6.51825 6.83861 6.98806 7.16576 7.28535 7.47684 7.57934 7.70710 7.92750 8.15810 8.69613 8.79342 9.14901 9.46858 10.93987 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.006047 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.901200 B = 4629.268025 C = 6161.196371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.064 3.936 5 C -0.093 4.093 6 C -0.107 4.107 7 C 0.526 3.474 8 O -0.552 6.552 9 N -0.705 5.705 10 C 0.266 3.734 11 H 0.046 0.954 12 C -0.146 4.146 13 C -0.532 4.532 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.120 4.120 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.388 0.612 34 H 0.089 0.911 35 H 0.015 0.985 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 2.030 -14.002 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.013 4.013 5 C -0.131 4.131 6 C -0.110 4.110 7 C 0.310 3.690 8 O -0.431 6.431 9 N -0.352 5.352 10 C 0.164 3.836 11 H 0.063 0.937 12 C -0.205 4.205 13 C -0.570 4.570 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.161 4.161 22 C -0.177 4.177 23 C -0.158 4.158 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.221 0.779 34 H 0.108 0.892 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.684 1.372 -13.842 15.432 hybrid contribution -0.562 0.411 0.965 1.190 sum -7.246 1.783 -12.877 14.883 Atomic orbital electron populations 1.21735 0.93955 1.02025 1.02981 1.22428 0.95330 0.84094 1.00162 1.87817 1.21548 1.26262 1.95511 1.22469 0.80561 0.97454 1.00795 1.21357 0.92552 0.95521 1.03643 1.22026 0.94892 0.98812 0.95294 1.19695 0.81234 0.83855 0.84204 1.90634 1.39065 1.27490 1.85948 1.46470 1.53971 1.26945 1.07765 1.18729 0.90600 0.94933 0.79334 0.93660 1.22063 0.98413 0.98741 1.01289 1.21261 1.13667 1.31067 0.91007 0.92023 1.24887 0.95163 0.94763 0.98904 1.69915 1.26201 1.33567 1.22464 0.86408 0.79998 0.78535 0.82270 1.19699 1.20890 1.20865 1.22959 0.98503 0.94518 1.00149 1.22809 0.97782 0.97021 1.00125 1.22841 0.98187 0.99678 0.95103 0.91295 0.91787 0.92086 0.93670 0.93237 0.93248 0.92806 0.90448 0.90522 0.77918 0.89233 0.96593 0.95529 0.92662 0.89384 0.90860 0.89931 0.91441 0.89970 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.70 6.66 37.16 0.25 0.94 16 3 O -0.39 -5.84 10.34 -35.23 -0.36 -6.20 16 4 C 0.06 0.95 5.65 37.16 0.21 1.16 16 5 C -0.09 -1.28 5.01 -26.73 -0.13 -1.42 16 6 C -0.11 -1.58 0.79 -154.85 -0.12 -1.70 16 7 C 0.53 10.46 5.71 -10.98 -0.06 10.40 16 8 O -0.55 -13.11 15.61 5.56 0.09 -13.03 16 9 N -0.70 -14.80 5.07 -54.93 -0.28 -15.07 16 10 C 0.27 6.80 2.52 -69.09 -0.17 6.63 16 11 H 0.05 1.34 7.66 -51.92 -0.40 0.94 16 12 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 13 C -0.53 -14.16 8.73 -34.44 -0.30 -14.47 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.88 -25.02 11.32 55.43 0.63 -24.40 16 17 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.12 -1.52 7.22 -25.92 -0.19 -1.71 16 22 C -0.14 -1.76 7.81 -25.92 -0.20 -1.96 16 23 C -0.12 -1.61 6.33 -25.92 -0.16 -1.77 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 30 H 0.05 0.95 7.66 -51.93 -0.40 0.55 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.90 8.05 -51.93 -0.42 0.49 16 33 H 0.39 7.24 8.54 -40.82 -0.35 6.89 16 34 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 35 H 0.01 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.09 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.07 0.95 8.10 -51.93 -0.42 0.52 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.26 7.34 -51.93 -0.38 0.88 16 43 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -30.43 348.98 -7.62 -38.05 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.67 Total: 6.28 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.26 Total: -6.66 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.35 Total: -39.47 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.28 Total: -19.23 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.43 -7.62 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178511893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.541 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds