Wall clock time and date at job start Mon Mar 30 2020 01:18:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42888 * 109.47393 * 2 1
4 4 C 1.42902 * 114.00250 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.47237 * 180.02562 * 4 3 2
6 6 C 1.52999 * 109.46924 * 175.19484 * 5 4 3
7 7 C 1.50704 * 112.84894 * 63.96788 * 6 5 4
8 8 O 1.21281 * 120.00308 * 245.67301 * 7 6 5
9 9 N 1.34772 * 119.99921 * 65.67474 * 7 6 5
10 10 C 1.46505 * 120.00057 * 174.77449 * 9 7 6
11 11 H 1.08996 * 109.46900 * 35.00178 * 10 9 7
12 12 C 1.53000 * 109.46855 * 274.99857 * 10 9 7
13 13 C 1.50699 * 109.46811 * 155.00119 * 10 9 7
14 14 H 1.07998 * 120.00779 * 0.02562 * 13 10 9
15 15 C 1.37881 * 119.99558 * 180.02562 * 13 10 9
16 16 N 1.31516 * 120.00413 * 359.97438 * 15 13 10
17 17 Si 1.86809 * 119.99901 * 180.02562 * 15 13 10
18 18 H 1.48496 * 109.47116 * 89.99830 * 17 15 13
19 19 H 1.48501 * 109.46963 * 209.99619 * 17 15 13
20 20 H 1.48499 * 109.47028 * 329.99543 * 17 15 13
21 21 C 1.53776 * 113.61183 * 195.16239 * 6 5 4
22 22 C 1.53951 * 87.02074 * 89.23276 * 21 6 5
23 23 C 1.53784 * 113.61495 * 292.77313 * 6 5 4
24 24 H 1.08998 * 109.47030 * 179.97438 * 1 2 3
25 25 H 1.08991 * 109.46852 * 300.00087 * 1 2 3
26 26 H 1.09000 * 109.46270 * 60.00231 * 1 2 3
27 27 H 1.08996 * 109.47086 * 239.99490 * 2 1 3
28 28 H 1.09006 * 109.46936 * 119.99876 * 2 1 3
29 29 H 1.08992 * 109.47179 * 59.99944 * 4 3 2
30 30 H 1.09003 * 109.46703 * 299.99735 * 4 3 2
31 31 H 1.08996 * 109.46897 * 55.19471 * 5 4 3
32 32 H 1.08998 * 109.46817 * 295.19431 * 5 4 3
33 33 H 0.97008 * 120.00470 * 354.77534 * 9 7 6
34 34 H 1.08995 * 109.47119 * 60.00319 * 12 10 9
35 35 H 1.09008 * 109.46619 * 179.97438 * 12 10 9
36 36 H 1.08996 * 109.47629 * 299.99875 * 12 10 9
37 37 H 0.96992 * 120.00648 * 179.97438 * 16 15 13
38 38 H 1.09000 * 113.61672 * 203.74823 * 21 6 5
39 39 H 1.08994 * 113.61912 * 334.65314 * 21 6 5
40 40 H 1.09007 * 113.53683 * 270.81423 * 22 21 6
41 41 H 1.08999 * 113.74719 * 139.93979 * 22 21 6
42 42 H 1.08993 * 113.61402 * 25.34833 * 23 6 5
43 43 H 1.08997 * 113.60882 * 156.16971 * 23 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3471 0.0000
4 6 3.4310 1.4600 0.0006
5 6 3.8255 2.9383 0.0012
6 6 5.3458 3.0603 0.1226
7 6 6.0762 2.4729 -1.0575
8 8 6.7809 1.4970 -0.9101
9 7 5.9461 3.0322 -2.2768
10 6 6.7433 2.5335 -3.4003
11 1 6.8729 1.4556 -3.3035
12 6 8.1133 3.2145 -3.3955
13 6 6.0344 2.8400 -4.6943
14 1 5.0853 3.3552 -4.6814
15 6 6.5976 2.4628 -5.8950
16 7 7.7536 1.8358 -5.9110
17 14 5.7193 2.8434 -7.4992
18 1 6.1532 4.1732 -7.9977
19 1 6.0543 1.8041 -8.5056
20 1 4.2522 2.8554 -7.2695
21 6 5.8221 4.4726 0.5012
22 6 5.6884 4.0365 1.9715
23 6 5.8947 2.5935 1.4812
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8899
26 1 -0.3632 0.5138 -0.8900
27 1 1.8934 -0.5139 -0.8899
28 1 1.8934 -0.5138 0.8900
29 1 3.8341 0.9763 -0.8891
30 1 3.8333 0.9766 0.8909
31 1 3.3522 3.4403 0.8449
32 1 3.4969 3.4024 -0.9287
33 1 5.3248 3.7650 -2.4106
34 1 8.6260 2.9928 -2.4596
35 1 8.7066 2.8431 -4.2312
36 1 7.9837 4.2924 -3.4923
37 1 8.1496 1.5701 -6.7555
38 1 6.8483 4.6827 0.1997
39 1 5.1257 5.2601 0.2133
40 1 4.6988 4.2177 2.3911
41 1 6.4925 4.3992 2.6118
42 1 5.2567 1.8663 1.9833
43 1 6.9403 2.2876 1.4478
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000178511906.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:18:50
Heat of formation + Delta-G solvation = -85.538123 kcal
Electronic energy + Delta-G solvation = -21518.205309 eV
Core-core repulsion = 18370.480939 eV
Total energy + Delta-G solvation = -3147.724370 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.32927 -37.90554 -37.25534 -34.70512 -32.46320 -32.14788 -30.22983 -28.86203
-25.84017 -25.34965 -25.19144 -22.78439 -22.61050 -21.41346 -19.72052 -18.38113
-17.11875 -16.63207 -16.21575 -15.79481 -15.32161 -15.00934 -14.57059 -14.42388
-14.03671 -13.64973 -13.47366 -12.66820 -12.49614 -12.42818 -12.23153 -12.07305
-11.99295 -11.74781 -11.36823 -11.18464 -11.07340 -10.98940 -10.96223 -10.82137
-10.70286 -10.37587 -10.30235 -10.23221 -10.10577 -9.50025 -9.02443 -8.79488
-8.53262 -7.85789 -6.10938 -4.19867 3.25021 3.31893 3.34391 3.40803
3.61495 4.12343 4.39475 4.55833 4.71881 4.85485 4.92884 4.99089
5.12625 5.21330 5.23781 5.31547 5.36102 5.46569 5.56052 5.64874
5.72914 5.79405 5.83435 5.89865 5.93806 5.95080 6.00693 6.12687
6.18854 6.32634 6.51856 6.82952 6.96353 7.16112 7.24663 7.49353
7.59398 7.71819 7.93326 8.16552 8.71710 8.80957 9.17668 9.47967
10.95068
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.014078 B = 0.005686 C = 0.004420
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1988.466154 B = 4923.454159 C = 6333.106275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.056 3.944
3 O -0.391 6.391
4 C 0.062 3.938
5 C -0.086 4.086
6 C -0.107 4.107
7 C 0.516 3.484
8 O -0.556 6.556
9 N -0.706 5.706
10 C 0.263 3.737
11 H 0.048 0.952
12 C -0.146 4.146
13 C -0.531 4.531
14 H 0.061 0.939
15 C 0.066 3.934
16 N -0.884 5.884
17 Si 0.900 3.100
18 H -0.279 1.279
19 H -0.285 1.285
20 H -0.274 1.274
21 C -0.120 4.120
22 C -0.141 4.141
23 C -0.113 4.113
24 H 0.068 0.932
25 H 0.060 0.940
26 H 0.063 0.937
27 H 0.049 0.951
28 H 0.046 0.954
29 H 0.055 0.945
30 H 0.051 0.949
31 H 0.079 0.921
32 H 0.078 0.922
33 H 0.388 0.612
34 H 0.012 0.988
35 H 0.090 0.910
36 H 0.026 0.974
37 H 0.264 0.736
38 H 0.087 0.913
39 H 0.074 0.926
40 H 0.080 0.920
41 H 0.068 0.932
42 H 0.068 0.932
43 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.215 2.351 13.527 16.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.020 4.020
3 O -0.311 6.311
4 C -0.014 4.014
5 C -0.123 4.123
6 C -0.111 4.111
7 C 0.300 3.700
8 O -0.435 6.435
9 N -0.353 5.353
10 C 0.161 3.839
11 H 0.066 0.934
12 C -0.205 4.205
13 C -0.570 4.570
14 H 0.079 0.921
15 C -0.137 4.137
16 N -0.522 5.522
17 Si 0.728 3.272
18 H -0.205 1.205
19 H -0.211 1.211
20 H -0.199 1.199
21 C -0.158 4.158
22 C -0.179 4.179
23 C -0.151 4.151
24 H 0.087 0.913
25 H 0.079 0.921
26 H 0.082 0.918
27 H 0.068 0.932
28 H 0.064 0.936
29 H 0.073 0.927
30 H 0.069 0.931
31 H 0.097 0.903
32 H 0.097 0.903
33 H 0.220 0.780
34 H 0.031 0.969
35 H 0.108 0.892
36 H 0.045 0.955
37 H 0.074 0.926
38 H 0.105 0.895
39 H 0.093 0.907
40 H 0.099 0.901
41 H 0.087 0.913
42 H 0.087 0.913
43 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -8.665 1.726 13.454 16.095
hybrid contribution -0.477 0.274 -1.101 1.230
sum -9.142 2.000 12.353 15.498
Atomic orbital electron populations
1.21734 0.93927 1.02052 1.02977 1.22432 0.95331 0.84040 1.00214
1.87810 1.21470 1.26319 1.95526 1.22485 0.80596 0.97344 1.00983
1.21172 0.91813 0.95627 1.03717 1.22105 0.95227 0.98554 0.95189
1.20129 0.81968 0.83741 0.84126 1.90636 1.41457 1.26443 1.84975
1.46498 1.42872 1.36535 1.09350 1.18734 0.87647 0.95486 0.82042
0.93406 1.22077 0.99634 0.98635 1.00112 1.21220 1.06230 1.39135
0.90407 0.92120 1.24886 0.94933 0.94701 0.99178 1.69899 1.16831
1.38872 1.26590 0.86466 0.79876 0.78047 0.82832 1.20539 1.21087
1.19853 1.22915 1.02150 0.94616 0.96095 1.22875 1.01859 0.96864
0.96262 1.22831 1.02336 0.96340 0.93568 0.91271 0.92055 0.91814
0.93228 0.93619 0.92714 0.93082 0.90284 0.90348 0.77974 0.96898
0.89156 0.95455 0.92621 0.89483 0.90713 0.90104 0.91301 0.91288
0.89036
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16
2 C 0.06 0.68 6.66 37.16 0.25 0.92 16
3 O -0.39 -5.67 10.34 -35.23 -0.36 -6.03 16
4 C 0.06 0.92 5.62 37.16 0.21 1.13 16
5 C -0.09 -1.15 4.94 -26.73 -0.13 -1.29 16
6 C -0.11 -1.58 0.78 -154.85 -0.12 -1.70 16
7 C 0.52 10.32 5.95 -10.99 -0.07 10.26 16
8 O -0.56 -13.37 15.78 5.56 0.09 -13.28 16
9 N -0.71 -14.87 5.07 -54.93 -0.28 -15.15 16
10 C 0.26 6.76 2.60 -69.08 -0.18 6.58 16
11 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16
12 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16
13 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16
14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16
16 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16
17 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16
18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16
20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
21 C -0.12 -1.49 7.23 -25.83 -0.19 -1.68 16
22 C -0.14 -1.51 7.74 -25.83 -0.20 -1.71 16
23 C -0.11 -1.51 6.71 -25.91 -0.17 -1.69 16
24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.05 0.94 7.69 -51.93 -0.40 0.54 16
30 H 0.05 0.71 6.73 -51.93 -0.35 0.36 16
31 H 0.08 0.92 7.31 -51.93 -0.38 0.54 16
32 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16
33 H 0.39 7.25 8.47 -40.82 -0.35 6.90 16
34 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16
35 H 0.09 2.46 6.07 -51.92 -0.32 2.14 16
36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
38 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16
39 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16
40 H 0.08 0.76 7.61 -51.92 -0.39 0.36 16
41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.07 0.86 6.81 -51.93 -0.35 0.50 16
43 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16
LS Contribution 346.55 15.07 5.22 5.22
Total: -1.00 -30.64 346.55 -7.51 -38.15
By element:
Atomic # 1 Polarization: 13.64 SS G_CDS: -7.51 Total: 6.12 kcal
Atomic # 6 Polarization: -6.11 SS G_CDS: -0.27 Total: -6.38 kcal
Atomic # 7 Polarization: -39.96 SS G_CDS: 0.35 Total: -39.61 kcal
Atomic # 8 Polarization: -19.04 SS G_CDS: -0.28 Total: -19.31 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -30.64 -7.51 -38.15 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000178511906.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.384 kcal
(2) G-P(sol) polarization free energy of solvation -30.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds