Wall clock time and date at job start Mon Mar 30 2020 01:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42888 * 109.47393 * 2 1 4 4 C 1.42902 * 114.00250 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46924 * 175.19484 * 5 4 3 7 7 C 1.50704 * 112.84894 * 63.96788 * 6 5 4 8 8 O 1.21281 * 120.00308 * 245.67301 * 7 6 5 9 9 N 1.34772 * 119.99921 * 65.67474 * 7 6 5 10 10 C 1.46505 * 120.00057 * 174.77449 * 9 7 6 11 11 H 1.08996 * 109.46900 * 35.00178 * 10 9 7 12 12 C 1.53000 * 109.46855 * 274.99857 * 10 9 7 13 13 C 1.50699 * 109.46811 * 155.00119 * 10 9 7 14 14 H 1.07998 * 120.00779 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99558 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00413 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99901 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47116 * 89.99830 * 17 15 13 19 19 H 1.48501 * 109.46963 * 209.99619 * 17 15 13 20 20 H 1.48499 * 109.47028 * 329.99543 * 17 15 13 21 21 C 1.53776 * 113.61183 * 195.16239 * 6 5 4 22 22 C 1.53951 * 87.02074 * 89.23276 * 21 6 5 23 23 C 1.53784 * 113.61495 * 292.77313 * 6 5 4 24 24 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46852 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.46270 * 60.00231 * 1 2 3 27 27 H 1.08996 * 109.47086 * 239.99490 * 2 1 3 28 28 H 1.09006 * 109.46936 * 119.99876 * 2 1 3 29 29 H 1.08992 * 109.47179 * 59.99944 * 4 3 2 30 30 H 1.09003 * 109.46703 * 299.99735 * 4 3 2 31 31 H 1.08996 * 109.46897 * 55.19471 * 5 4 3 32 32 H 1.08998 * 109.46817 * 295.19431 * 5 4 3 33 33 H 0.97008 * 120.00470 * 354.77534 * 9 7 6 34 34 H 1.08995 * 109.47119 * 60.00319 * 12 10 9 35 35 H 1.09008 * 109.46619 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.47629 * 299.99875 * 12 10 9 37 37 H 0.96992 * 120.00648 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.61672 * 203.74823 * 21 6 5 39 39 H 1.08994 * 113.61912 * 334.65314 * 21 6 5 40 40 H 1.09007 * 113.53683 * 270.81423 * 22 21 6 41 41 H 1.08999 * 113.74719 * 139.93979 * 22 21 6 42 42 H 1.08993 * 113.61402 * 25.34833 * 23 6 5 43 43 H 1.08997 * 113.60882 * 156.16971 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3458 3.0603 0.1226 7 6 6.0762 2.4729 -1.0575 8 8 6.7809 1.4970 -0.9101 9 7 5.9461 3.0322 -2.2768 10 6 6.7433 2.5335 -3.4003 11 1 6.8729 1.4556 -3.3035 12 6 8.1133 3.2145 -3.3955 13 6 6.0344 2.8400 -4.6943 14 1 5.0853 3.3552 -4.6814 15 6 6.5976 2.4628 -5.8950 16 7 7.7536 1.8358 -5.9110 17 14 5.7193 2.8434 -7.4992 18 1 6.1532 4.1732 -7.9977 19 1 6.0543 1.8041 -8.5056 20 1 4.2522 2.8554 -7.2695 21 6 5.8221 4.4726 0.5012 22 6 5.6884 4.0365 1.9715 23 6 5.8947 2.5935 1.4812 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8341 0.9763 -0.8891 30 1 3.8333 0.9766 0.8909 31 1 3.3522 3.4403 0.8449 32 1 3.4969 3.4024 -0.9287 33 1 5.3248 3.7650 -2.4106 34 1 8.6260 2.9928 -2.4596 35 1 8.7066 2.8431 -4.2312 36 1 7.9837 4.2924 -3.4923 37 1 8.1496 1.5701 -6.7555 38 1 6.8483 4.6827 0.1997 39 1 5.1257 5.2601 0.2133 40 1 4.6988 4.2177 2.3911 41 1 6.4925 4.3992 2.6118 42 1 5.2567 1.8663 1.9833 43 1 6.9403 2.2876 1.4478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178511906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:50 Heat of formation + Delta-G solvation = -85.538123 kcal Electronic energy + Delta-G solvation = -21518.205309 eV Core-core repulsion = 18370.480939 eV Total energy + Delta-G solvation = -3147.724370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32927 -37.90554 -37.25534 -34.70512 -32.46320 -32.14788 -30.22983 -28.86203 -25.84017 -25.34965 -25.19144 -22.78439 -22.61050 -21.41346 -19.72052 -18.38113 -17.11875 -16.63207 -16.21575 -15.79481 -15.32161 -15.00934 -14.57059 -14.42388 -14.03671 -13.64973 -13.47366 -12.66820 -12.49614 -12.42818 -12.23153 -12.07305 -11.99295 -11.74781 -11.36823 -11.18464 -11.07340 -10.98940 -10.96223 -10.82137 -10.70286 -10.37587 -10.30235 -10.23221 -10.10577 -9.50025 -9.02443 -8.79488 -8.53262 -7.85789 -6.10938 -4.19867 3.25021 3.31893 3.34391 3.40803 3.61495 4.12343 4.39475 4.55833 4.71881 4.85485 4.92884 4.99089 5.12625 5.21330 5.23781 5.31547 5.36102 5.46569 5.56052 5.64874 5.72914 5.79405 5.83435 5.89865 5.93806 5.95080 6.00693 6.12687 6.18854 6.32634 6.51856 6.82952 6.96353 7.16112 7.24663 7.49353 7.59398 7.71819 7.93326 8.16552 8.71710 8.80957 9.17668 9.47967 10.95068 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.005686 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.466154 B = 4923.454159 C = 6333.106275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.391 6.391 4 C 0.062 3.938 5 C -0.086 4.086 6 C -0.107 4.107 7 C 0.516 3.484 8 O -0.556 6.556 9 N -0.706 5.706 10 C 0.263 3.737 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.531 4.531 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.113 4.113 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.388 0.612 34 H 0.012 0.988 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 2.351 13.527 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.014 4.014 5 C -0.123 4.123 6 C -0.111 4.111 7 C 0.300 3.700 8 O -0.435 6.435 9 N -0.353 5.353 10 C 0.161 3.839 11 H 0.066 0.934 12 C -0.205 4.205 13 C -0.570 4.570 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.158 4.158 22 C -0.179 4.179 23 C -0.151 4.151 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.220 0.780 34 H 0.031 0.969 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.665 1.726 13.454 16.095 hybrid contribution -0.477 0.274 -1.101 1.230 sum -9.142 2.000 12.353 15.498 Atomic orbital electron populations 1.21734 0.93927 1.02052 1.02977 1.22432 0.95331 0.84040 1.00214 1.87810 1.21470 1.26319 1.95526 1.22485 0.80596 0.97344 1.00983 1.21172 0.91813 0.95627 1.03717 1.22105 0.95227 0.98554 0.95189 1.20129 0.81968 0.83741 0.84126 1.90636 1.41457 1.26443 1.84975 1.46498 1.42872 1.36535 1.09350 1.18734 0.87647 0.95486 0.82042 0.93406 1.22077 0.99634 0.98635 1.00112 1.21220 1.06230 1.39135 0.90407 0.92120 1.24886 0.94933 0.94701 0.99178 1.69899 1.16831 1.38872 1.26590 0.86466 0.79876 0.78047 0.82832 1.20539 1.21087 1.19853 1.22915 1.02150 0.94616 0.96095 1.22875 1.01859 0.96864 0.96262 1.22831 1.02336 0.96340 0.93568 0.91271 0.92055 0.91814 0.93228 0.93619 0.92714 0.93082 0.90284 0.90348 0.77974 0.96898 0.89156 0.95455 0.92621 0.89483 0.90713 0.90104 0.91301 0.91288 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.68 6.66 37.16 0.25 0.92 16 3 O -0.39 -5.67 10.34 -35.23 -0.36 -6.03 16 4 C 0.06 0.92 5.62 37.16 0.21 1.13 16 5 C -0.09 -1.15 4.94 -26.73 -0.13 -1.29 16 6 C -0.11 -1.58 0.78 -154.85 -0.12 -1.70 16 7 C 0.52 10.32 5.95 -10.99 -0.07 10.26 16 8 O -0.56 -13.37 15.78 5.56 0.09 -13.28 16 9 N -0.71 -14.87 5.07 -54.93 -0.28 -15.15 16 10 C 0.26 6.76 2.60 -69.08 -0.18 6.58 16 11 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 12 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 13 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 17 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.12 -1.49 7.23 -25.83 -0.19 -1.68 16 22 C -0.14 -1.51 7.74 -25.83 -0.20 -1.71 16 23 C -0.11 -1.51 6.71 -25.91 -0.17 -1.69 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.94 7.69 -51.93 -0.40 0.54 16 30 H 0.05 0.71 6.73 -51.93 -0.35 0.36 16 31 H 0.08 0.92 7.31 -51.93 -0.38 0.54 16 32 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.39 7.25 8.47 -40.82 -0.35 6.90 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 2.46 6.07 -51.92 -0.32 2.14 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 39 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.08 0.76 7.61 -51.92 -0.39 0.36 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.86 6.81 -51.93 -0.35 0.50 16 43 H 0.09 1.38 7.71 -51.93 -0.40 0.98 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -30.64 346.55 -7.51 -38.15 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.51 Total: 6.12 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.27 Total: -6.38 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.35 Total: -39.61 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.28 Total: -19.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.64 -7.51 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178511906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.384 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds