Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42888 * 109.47393 * 2 1 4 4 C 1.42902 * 114.00250 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47237 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46924 * 175.19484 * 5 4 3 7 7 C 1.50704 * 112.84894 * 63.96788 * 6 5 4 8 8 O 1.21281 * 120.00308 * 245.67301 * 7 6 5 9 9 N 1.34772 * 119.99921 * 65.67474 * 7 6 5 10 10 C 1.46505 * 120.00057 * 174.77449 * 9 7 6 11 11 H 1.08996 * 109.46900 * 35.00178 * 10 9 7 12 12 C 1.53000 * 109.46855 * 274.99857 * 10 9 7 13 13 C 1.50699 * 109.46811 * 155.00119 * 10 9 7 14 14 H 1.07998 * 120.00779 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99558 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00413 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99901 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47116 * 89.99830 * 17 15 13 19 19 H 1.48501 * 109.46963 * 209.99619 * 17 15 13 20 20 H 1.48499 * 109.47028 * 329.99543 * 17 15 13 21 21 C 1.53776 * 113.61183 * 195.16239 * 6 5 4 22 22 C 1.53951 * 87.02074 * 89.23276 * 21 6 5 23 23 C 1.53784 * 113.61495 * 292.77313 * 6 5 4 24 24 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46852 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.46270 * 60.00231 * 1 2 3 27 27 H 1.08996 * 109.47086 * 239.99490 * 2 1 3 28 28 H 1.09006 * 109.46936 * 119.99876 * 2 1 3 29 29 H 1.08992 * 109.47179 * 59.99944 * 4 3 2 30 30 H 1.09003 * 109.46703 * 299.99735 * 4 3 2 31 31 H 1.08996 * 109.46897 * 55.19471 * 5 4 3 32 32 H 1.08998 * 109.46817 * 295.19431 * 5 4 3 33 33 H 0.97008 * 120.00470 * 354.77534 * 9 7 6 34 34 H 1.08995 * 109.47119 * 60.00319 * 12 10 9 35 35 H 1.09008 * 109.46619 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.47629 * 299.99875 * 12 10 9 37 37 H 0.96992 * 120.00648 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.61672 * 203.74823 * 21 6 5 39 39 H 1.08994 * 113.61912 * 334.65314 * 21 6 5 40 40 H 1.09007 * 113.53683 * 270.81423 * 22 21 6 41 41 H 1.08999 * 113.74719 * 139.93979 * 22 21 6 42 42 H 1.08993 * 113.61402 * 25.34833 * 23 6 5 43 43 H 1.08997 * 113.60882 * 156.16971 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3458 3.0603 0.1226 7 6 6.0762 2.4729 -1.0575 8 8 6.7809 1.4970 -0.9101 9 7 5.9461 3.0322 -2.2768 10 6 6.7433 2.5335 -3.4003 11 1 6.8729 1.4556 -3.3035 12 6 8.1133 3.2145 -3.3955 13 6 6.0344 2.8400 -4.6943 14 1 5.0853 3.3552 -4.6814 15 6 6.5976 2.4628 -5.8950 16 7 7.7536 1.8358 -5.9110 17 14 5.7193 2.8434 -7.4992 18 1 6.1532 4.1732 -7.9977 19 1 6.0543 1.8041 -8.5056 20 1 4.2522 2.8554 -7.2695 21 6 5.8221 4.4726 0.5012 22 6 5.6884 4.0365 1.9715 23 6 5.8947 2.5935 1.4812 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8341 0.9763 -0.8891 30 1 3.8333 0.9766 0.8909 31 1 3.3522 3.4403 0.8449 32 1 3.4969 3.4024 -0.9287 33 1 5.3248 3.7650 -2.4106 34 1 8.6260 2.9928 -2.4596 35 1 8.7066 2.8431 -4.2312 36 1 7.9837 4.2924 -3.4923 37 1 8.1496 1.5701 -6.7555 38 1 6.8483 4.6827 0.1997 39 1 5.1257 5.2601 0.2133 40 1 4.6988 4.2177 2.3911 41 1 6.4925 4.3992 2.6118 42 1 5.2567 1.8663 1.9833 43 1 6.9403 2.2876 1.4478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178511906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = -105.332780 kcal Electronic energy + Delta-G solvation = -21519.063669 eV Core-core repulsion = 18370.480939 eV Total energy + Delta-G solvation = -3148.582730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65605 -39.17653 -38.58066 -36.64995 -34.32810 -33.25138 -31.41971 -30.60455 -27.40655 -26.95503 -26.43233 -23.88023 -23.69570 -22.98300 -21.42804 -19.89142 -18.53528 -17.76082 -17.64679 -17.24869 -17.12185 -16.30260 -16.10312 -15.60986 -15.38889 -15.17514 -14.75534 -14.45628 -13.75686 -13.70080 -13.53223 -13.32752 -13.14289 -12.99293 -12.95030 -12.87166 -12.73665 -12.33635 -12.30984 -12.18755 -12.16294 -12.01652 -11.93701 -11.37786 -11.17876 -11.09699 -10.64726 -10.60014 -10.37413 -9.73677 -8.19268 -6.36839 1.42765 1.43644 1.54270 1.81710 2.34198 2.54840 2.67366 3.10869 3.44288 3.63526 3.85099 3.89610 4.02316 4.08400 4.16777 4.21067 4.38703 4.42355 4.47362 4.62567 4.72892 4.78342 4.84309 4.85854 4.88224 4.93990 4.99428 5.02929 5.07365 5.10662 5.16620 5.25083 5.28291 5.42172 5.53581 5.60455 5.68020 5.89491 6.08568 6.17256 6.71093 6.98028 7.30917 7.56299 8.87055 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.005686 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.466154 B = 4923.454159 C = 6333.106275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.400 6.400 4 C 0.065 3.935 5 C -0.079 4.079 6 C -0.106 4.106 7 C 0.511 3.489 8 O -0.604 6.604 9 N -0.702 5.702 10 C 0.269 3.731 11 H -0.005 1.005 12 C -0.131 4.131 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.972 3.028 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.120 4.120 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.402 0.598 34 H 0.009 0.991 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 4.243 14.645 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.320 6.320 4 C -0.011 4.011 5 C -0.116 4.116 6 C -0.109 4.109 7 C 0.299 3.701 8 O -0.486 6.486 9 N -0.350 5.350 10 C 0.165 3.835 11 H 0.012 0.988 12 C -0.190 4.190 13 C -0.584 4.584 14 H 0.089 0.911 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.796 3.204 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.158 4.158 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.237 0.763 34 H 0.029 0.971 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.908 3.647 14.593 18.581 hybrid contribution 0.235 -0.415 -1.422 1.500 sum -10.673 3.233 13.172 17.258 Atomic orbital electron populations 1.21739 0.91898 1.03490 1.03018 1.22684 0.97024 0.83086 1.00295 1.87794 1.20916 1.27777 1.95495 1.22412 0.80983 0.98204 0.99532 1.21174 0.90575 0.94836 1.05018 1.22216 0.95579 1.00361 0.92733 1.21169 0.81283 0.82767 0.84919 1.90606 1.43640 1.28616 1.85717 1.46276 1.42825 1.37027 1.08898 1.18331 0.88787 0.92629 0.83720 0.98758 1.21882 0.98977 0.99232 0.98909 1.21519 1.06676 1.39287 0.90903 0.91134 1.25800 0.95572 0.94318 1.02830 1.70049 1.18330 1.39705 1.27516 0.85351 0.78876 0.78031 0.78132 1.19402 1.21150 1.19008 1.22957 1.01828 0.93388 0.97340 1.22840 1.03906 0.93622 0.95222 1.22870 1.01004 0.98863 0.93031 0.89190 0.91261 0.92454 0.94431 0.92343 0.96522 0.92295 0.86959 0.90613 0.76313 0.97145 0.91487 0.93917 0.92538 0.90959 0.88238 0.87404 0.89856 0.90296 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 1.05 6.66 71.98 0.48 1.53 16 3 O -0.40 -11.11 10.34 -148.98 -1.54 -12.65 16 4 C 0.07 1.89 5.62 71.98 0.40 2.30 16 5 C -0.08 -1.96 4.94 30.60 0.15 -1.80 16 6 C -0.11 -2.99 0.78 -52.40 -0.04 -3.03 16 7 C 0.51 21.01 5.95 87.66 0.52 21.54 16 8 O -0.60 -30.65 15.78 -3.03 -0.05 -30.69 16 9 N -0.70 -30.24 5.07 -446.09 -2.26 -32.50 16 10 C 0.27 14.37 2.60 44.24 0.12 14.49 16 11 H -0.01 -0.35 7.51 -2.39 -0.02 -0.37 16 12 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 13 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 14 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 15 C 0.01 0.81 5.30 84.66 0.45 1.26 16 16 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 17 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 C -0.12 -2.60 7.23 31.18 0.23 -2.37 16 22 C -0.12 -2.10 7.74 31.18 0.24 -1.86 16 23 C -0.12 -3.04 6.71 31.12 0.21 -2.83 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.02 0.60 7.69 -2.39 -0.02 0.58 16 30 H 0.06 1.59 6.73 -2.39 -0.02 1.57 16 31 H 0.11 2.12 7.31 -2.39 -0.02 2.10 16 32 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.40 14.89 8.47 -92.70 -0.79 14.11 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 3.78 6.07 -2.38 -0.01 3.77 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 39 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.11 1.41 7.61 -2.38 -0.02 1.39 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.82 6.81 -2.39 -0.02 1.80 16 43 H 0.07 2.03 7.71 -2.39 -0.02 2.01 16 Total: -1.00 -69.37 346.55 3.00 -66.38 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.19 Total: 26.06 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.39 Total: -8.05 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.02 Total: -85.72 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.59 Total: -43.35 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -69.37 3.00 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178511906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.957 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds