Wall clock time and date at job start Mon Mar 30 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47052 * 2 1 4 4 C 1.42897 * 113.99816 * 179.97438 * 3 2 1 5 5 C 1.53786 * 113.61278 * 150.00366 * 4 3 2 6 6 C 1.53776 * 87.08217 * 89.20367 * 5 4 3 7 7 C 1.52999 * 113.61721 * 139.98131 * 6 5 4 8 8 C 1.50703 * 109.47232 * 174.99804 * 7 6 5 9 9 O 1.21280 * 119.99719 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00126 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99939 * 179.97438 * 10 8 7 13 13 H 1.09001 * 109.47464 * 0.02562 * 12 10 8 14 14 C 1.53006 * 109.46995 * 120.00347 * 12 10 8 15 15 C 1.50699 * 109.47248 * 240.00033 * 12 10 8 16 16 H 1.07999 * 120.00019 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99908 * 180.02562 * 15 12 10 18 18 N 1.31510 * 120.00364 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46997 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47438 * 119.99776 * 19 17 15 22 22 H 1.48494 * 109.47197 * 239.99736 * 19 17 15 23 23 C 1.53778 * 113.69375 * 247.53659 * 4 3 2 24 24 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47286 * 299.99738 * 1 2 3 26 26 H 1.09003 * 109.47666 * 59.99570 * 1 2 3 27 27 H 1.09006 * 109.46843 * 240.00545 * 2 1 3 28 28 H 1.08995 * 109.47419 * 120.00506 * 2 1 3 29 29 H 1.09001 * 112.85210 * 18.81062 * 4 3 2 30 30 H 1.09003 * 113.61015 * 334.65051 * 5 4 3 31 31 H 1.09006 * 113.61213 * 203.75124 * 5 4 3 32 32 H 1.09009 * 113.61188 * 270.80410 * 6 5 4 33 33 H 1.09005 * 109.46809 * 55.00207 * 7 6 5 34 34 H 1.08992 * 109.47300 * 294.99763 * 7 6 5 35 35 H 1.08998 * 109.46877 * 269.99882 * 11 10 8 36 36 H 1.09004 * 109.46845 * 29.99902 * 11 10 8 37 37 H 1.08994 * 109.47249 * 150.00133 * 11 10 8 38 38 H 1.09001 * 109.47002 * 299.99701 * 14 12 10 39 39 H 1.08993 * 109.46955 * 60.00138 * 14 12 10 40 40 H 1.09000 * 109.47050 * 179.97438 * 14 12 10 41 41 H 0.96999 * 120.00396 * 180.02562 * 18 17 15 42 42 H 1.09001 * 113.61408 * 156.32677 * 23 4 3 43 43 H 1.09007 * 113.61375 * 25.42802 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9488 2.7252 -0.7039 6 6 3.8412 3.4321 0.6575 7 6 5.0040 4.3831 0.9479 8 6 4.7447 5.1137 2.2403 9 8 3.7296 4.8955 2.8670 10 7 5.6404 6.0102 2.6990 11 6 6.8658 6.2750 1.9410 12 6 5.3881 6.7207 3.9550 13 1 4.4349 6.3951 4.3716 14 6 6.5101 6.4137 4.9490 15 6 5.3416 8.2040 3.6925 16 1 5.4852 8.5797 2.6902 17 6 5.1158 9.0813 4.7319 18 7 4.9404 8.6237 5.9523 19 14 5.0574 10.9198 4.4064 20 1 5.2822 11.1739 2.9606 21 1 3.7282 11.4507 4.8020 22 1 6.1161 11.5964 5.1979 23 6 4.0038 2.0454 1.3020 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9280 0.5456 -0.3229 30 1 3.2638 3.1179 -1.4553 31 1 4.9719 2.6338 -1.0687 32 1 2.8671 3.8872 0.8374 33 1 5.0956 5.1038 0.1353 34 1 5.9282 3.8117 1.0327 35 1 7.6511 5.5948 2.2708 36 1 6.6758 6.1228 0.8785 37 1 7.1822 7.3042 2.1098 38 1 6.5437 5.3409 5.1389 39 1 7.4634 6.7391 4.5326 40 1 6.3226 6.9427 5.8833 41 1 4.7811 9.2409 6.6835 42 1 5.0419 1.7683 1.4856 43 1 3.3632 1.8895 2.1701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188652692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:50 Heat of formation + Delta-G solvation = -69.186640 kcal Electronic energy + Delta-G solvation = -21049.451278 eV Core-core repulsion = 17902.435962 eV Total energy + Delta-G solvation = -3147.015316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86168 -38.62568 -36.35272 -35.13672 -32.83702 -31.31220 -30.12932 -28.49628 -25.98542 -25.63191 -25.18475 -23.33825 -22.97463 -20.85053 -19.38227 -18.18185 -16.60688 -16.54515 -16.07448 -15.70242 -15.30503 -15.27987 -14.80970 -14.35516 -13.75906 -13.44033 -13.13075 -12.73055 -12.59920 -12.48684 -12.31385 -12.15616 -11.80492 -11.62505 -11.53298 -11.40498 -11.19664 -11.02404 -10.79749 -10.73534 -10.58973 -10.35275 -10.19671 -10.14174 -9.97891 -9.46119 -9.12221 -8.78020 -8.38702 -7.49867 -6.04009 -4.11773 3.27709 3.35521 3.38390 3.49737 3.53101 4.05354 4.42685 4.63001 4.68252 4.85554 4.90410 4.97092 5.09792 5.19635 5.26670 5.26828 5.39683 5.52328 5.68058 5.70691 5.73617 5.77239 5.84635 5.89885 5.95114 5.96969 6.09207 6.25317 6.35039 6.41883 6.65321 6.79888 6.88380 7.12122 7.23431 7.50426 7.60079 7.76771 8.07094 8.25322 8.62848 8.88631 9.18011 9.54988 11.01317 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.003630 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.376167 B = 7712.251518 C = 7958.346441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.365 6.365 4 C 0.063 3.937 5 C -0.139 4.139 6 C -0.082 4.082 7 C -0.131 4.131 8 C 0.502 3.498 9 O -0.551 6.551 10 N -0.597 5.597 11 C 0.085 3.915 12 C 0.257 3.743 13 H 0.062 0.938 14 C -0.145 4.145 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.151 4.151 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.010 0.990 39 H 0.028 0.972 40 H 0.092 0.908 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -14.674 -13.008 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.284 6.284 4 C 0.005 3.995 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.172 4.172 8 C 0.289 3.711 9 O -0.430 6.430 10 N -0.329 5.329 11 C -0.059 4.059 12 C 0.156 3.844 13 H 0.080 0.920 14 C -0.204 4.204 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.188 4.188 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.029 0.971 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.211 -14.544 -12.468 19.157 hybrid contribution 0.357 0.884 -0.100 0.958 sum 0.146 -13.660 -12.568 18.562 Atomic orbital electron populations 1.21748 0.93825 1.02051 1.03326 1.22498 0.95562 0.84072 0.99799 1.87925 1.19921 1.25951 1.94589 1.23014 0.81446 0.97450 0.97556 1.23301 1.01071 0.95655 0.97587 1.22222 0.99590 0.93790 0.94472 1.21719 0.99508 0.99038 0.96889 1.20450 0.83658 0.80125 0.86876 1.90638 1.27167 1.65643 1.59566 1.48251 1.19593 1.39894 1.25128 1.21571 0.87285 1.02469 0.94601 1.18903 0.96218 0.90592 0.78642 0.91989 1.22075 0.98175 0.96989 1.03157 1.21378 1.49672 0.90749 0.94494 0.92242 1.24903 0.94934 0.99040 0.94987 1.69891 1.48580 1.34590 0.99577 0.86449 0.77684 0.85028 0.78272 1.19824 1.20910 1.20978 1.23478 1.01017 0.96546 0.97789 0.91269 0.91630 0.91909 0.93631 0.93419 0.91344 0.90707 0.89148 0.87846 0.89437 0.89774 0.94116 0.92836 0.90274 0.97119 0.95259 0.88935 0.92784 0.89740 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.15 0.38 -0.94 16 2 C 0.06 0.56 6.50 37.15 0.24 0.81 16 3 O -0.36 -4.80 10.28 -35.23 -0.36 -5.16 16 4 C 0.06 0.74 4.37 -25.92 -0.11 0.62 16 5 C -0.14 -1.55 7.47 -25.92 -0.19 -1.75 16 6 C -0.08 -1.20 3.09 -89.81 -0.28 -1.48 16 7 C -0.13 -1.96 4.09 -27.88 -0.11 -2.08 16 8 C 0.50 10.58 7.67 -10.99 -0.08 10.50 16 9 O -0.55 -13.95 15.08 5.56 0.08 -13.87 16 10 N -0.60 -13.02 2.75 -175.26 -0.48 -13.50 16 11 C 0.08 1.44 9.24 59.85 0.55 1.99 16 12 C 0.26 6.73 2.64 -69.08 -0.18 6.55 16 13 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 14 C -0.15 -3.57 8.97 37.16 0.33 -3.24 16 15 C -0.52 -14.44 7.99 -34.44 -0.28 -14.71 16 16 H 0.06 1.61 7.33 -52.49 -0.38 1.23 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.15 -2.03 7.47 -25.92 -0.19 -2.22 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.64 7.87 -51.93 -0.41 0.24 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.10 1.84 7.67 -51.92 -0.40 1.44 16 33 H 0.09 1.17 7.40 -51.93 -0.38 0.78 16 34 H 0.08 1.06 7.81 -51.93 -0.41 0.66 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.73 6.44 -51.93 -0.33 0.40 16 37 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 40 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -32.26 345.12 -7.49 -39.75 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.52 Total: 0.51 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.02 Total: -4.27 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.14 Total: -38.45 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.28 Total: -19.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.26 -7.49 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188652692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.436 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds