Wall clock time and date at job start Mon Mar 30 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47052 * 2 1 4 4 C 1.42897 * 113.99816 * 179.97438 * 3 2 1 5 5 C 1.53786 * 113.61278 * 150.00366 * 4 3 2 6 6 C 1.53776 * 87.08217 * 89.20367 * 5 4 3 7 7 C 1.52999 * 113.61721 * 139.98131 * 6 5 4 8 8 C 1.50703 * 109.47232 * 174.99804 * 7 6 5 9 9 O 1.21280 * 119.99719 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00049 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00126 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99939 * 179.97438 * 10 8 7 13 13 H 1.09001 * 109.47464 * 0.02562 * 12 10 8 14 14 C 1.53006 * 109.46995 * 120.00347 * 12 10 8 15 15 C 1.50699 * 109.47248 * 240.00033 * 12 10 8 16 16 H 1.07999 * 120.00019 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99908 * 180.02562 * 15 12 10 18 18 N 1.31510 * 120.00364 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46997 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47438 * 119.99776 * 19 17 15 22 22 H 1.48494 * 109.47197 * 239.99736 * 19 17 15 23 23 C 1.53778 * 113.69375 * 247.53659 * 4 3 2 24 24 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47286 * 299.99738 * 1 2 3 26 26 H 1.09003 * 109.47666 * 59.99570 * 1 2 3 27 27 H 1.09006 * 109.46843 * 240.00545 * 2 1 3 28 28 H 1.08995 * 109.47419 * 120.00506 * 2 1 3 29 29 H 1.09001 * 112.85210 * 18.81062 * 4 3 2 30 30 H 1.09003 * 113.61015 * 334.65051 * 5 4 3 31 31 H 1.09006 * 113.61213 * 203.75124 * 5 4 3 32 32 H 1.09009 * 113.61188 * 270.80410 * 6 5 4 33 33 H 1.09005 * 109.46809 * 55.00207 * 7 6 5 34 34 H 1.08992 * 109.47300 * 294.99763 * 7 6 5 35 35 H 1.08998 * 109.46877 * 269.99882 * 11 10 8 36 36 H 1.09004 * 109.46845 * 29.99902 * 11 10 8 37 37 H 1.08994 * 109.47249 * 150.00133 * 11 10 8 38 38 H 1.09001 * 109.47002 * 299.99701 * 14 12 10 39 39 H 1.08993 * 109.46955 * 60.00138 * 14 12 10 40 40 H 1.09000 * 109.47050 * 179.97438 * 14 12 10 41 41 H 0.96999 * 120.00396 * 180.02562 * 18 17 15 42 42 H 1.09001 * 113.61408 * 156.32677 * 23 4 3 43 43 H 1.09007 * 113.61375 * 25.42802 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9488 2.7252 -0.7039 6 6 3.8412 3.4321 0.6575 7 6 5.0040 4.3831 0.9479 8 6 4.7447 5.1137 2.2403 9 8 3.7296 4.8955 2.8670 10 7 5.6404 6.0102 2.6990 11 6 6.8658 6.2750 1.9410 12 6 5.3881 6.7207 3.9550 13 1 4.4349 6.3951 4.3716 14 6 6.5101 6.4137 4.9490 15 6 5.3416 8.2040 3.6925 16 1 5.4852 8.5797 2.6902 17 6 5.1158 9.0813 4.7319 18 7 4.9404 8.6237 5.9523 19 14 5.0574 10.9198 4.4064 20 1 5.2822 11.1739 2.9606 21 1 3.7282 11.4507 4.8020 22 1 6.1161 11.5964 5.1979 23 6 4.0038 2.0454 1.3020 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9280 0.5456 -0.3229 30 1 3.2638 3.1179 -1.4553 31 1 4.9719 2.6338 -1.0687 32 1 2.8671 3.8872 0.8374 33 1 5.0956 5.1038 0.1353 34 1 5.9282 3.8117 1.0327 35 1 7.6511 5.5948 2.2708 36 1 6.6758 6.1228 0.8785 37 1 7.1822 7.3042 2.1098 38 1 6.5437 5.3409 5.1389 39 1 7.4634 6.7391 4.5326 40 1 6.3226 6.9427 5.8833 41 1 4.7811 9.2409 6.6835 42 1 5.0419 1.7683 1.4856 43 1 3.3632 1.8895 2.1701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188652692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:50 Heat of formation + Delta-G solvation = -89.679018 kcal Electronic energy + Delta-G solvation = -21050.339894 eV Core-core repulsion = 17902.435962 eV Total energy + Delta-G solvation = -3147.903932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10160 -40.00867 -37.45335 -36.86513 -34.80222 -32.36978 -31.60440 -29.95885 -27.48357 -27.31147 -26.58151 -24.60272 -23.72103 -22.55765 -20.41349 -19.83094 -18.51618 -17.79530 -17.46980 -17.07010 -16.62771 -16.43578 -16.18988 -15.96459 -15.17270 -14.60755 -14.36934 -14.25252 -13.93473 -13.74320 -13.52780 -13.31013 -13.15784 -13.04530 -12.93799 -12.84093 -12.69387 -12.61572 -12.30773 -12.20925 -12.11722 -12.09135 -11.69454 -11.40647 -11.16776 -10.96328 -10.61688 -10.41668 -10.33927 -9.27190 -8.15223 -6.32156 1.39583 1.41360 1.52881 1.91066 2.34825 2.55275 2.70908 3.12407 3.60587 3.71571 3.87620 3.94159 4.07476 4.20053 4.30015 4.43659 4.47410 4.49882 4.64817 4.67643 4.75281 4.78651 4.82150 4.84668 4.89623 4.92740 4.96943 5.02292 5.06572 5.10412 5.20760 5.24953 5.36138 5.48149 5.52618 5.63141 5.69048 6.06341 6.17242 6.41964 6.77171 6.91636 7.34024 7.56617 8.89374 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.003630 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.376167 B = 7712.251518 C = 7958.346441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.398 6.398 4 C 0.065 3.935 5 C -0.118 4.118 6 C -0.096 4.096 7 C -0.114 4.114 8 C 0.488 3.512 9 O -0.609 6.609 10 N -0.606 5.606 11 C 0.080 3.920 12 C 0.260 3.740 13 H 0.002 0.998 14 C -0.130 4.130 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.156 4.156 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.018 0.982 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.264 0.736 42 H 0.108 0.892 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -15.326 -15.903 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.317 6.317 4 C 0.007 3.993 5 C -0.155 4.155 6 C -0.115 4.115 7 C -0.154 4.154 8 C 0.278 3.722 9 O -0.492 6.492 10 N -0.336 5.336 11 C -0.062 4.062 12 C 0.157 3.843 13 H 0.020 0.980 14 C -0.189 4.189 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.188 4.188 18 N -0.559 5.559 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.193 4.193 24 H 0.112 0.888 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.974 -15.206 -15.399 21.731 hybrid contribution -0.364 1.043 0.847 1.392 sum 1.610 -14.163 -14.552 20.370 Atomic orbital electron populations 1.21784 0.93456 1.03367 1.02314 1.22718 0.96031 0.82934 1.00938 1.87903 1.21122 1.28067 1.94649 1.23103 0.80992 0.99088 0.96074 1.23277 1.03116 0.93941 0.95171 1.22173 0.97330 0.94160 0.97840 1.21744 1.01011 0.99188 0.93409 1.21663 0.82448 0.79705 0.88427 1.90614 1.29591 1.67330 1.61655 1.48302 1.21494 1.39623 1.24228 1.21856 0.85666 1.02317 0.96402 1.18482 0.94036 0.90598 0.81159 0.97955 1.21851 0.98366 0.97091 1.01578 1.21641 1.49739 0.91591 0.94636 0.92011 1.25789 0.94454 1.03792 0.94721 1.70040 1.49178 1.36189 1.00474 0.85377 0.77557 0.79232 0.78664 1.18731 1.21234 1.19857 1.23567 1.01810 0.96487 0.97452 0.88791 0.93442 0.92097 0.91348 0.93230 0.88122 0.90873 0.85407 0.92526 0.86873 0.86040 0.91583 0.88770 0.91658 0.96322 0.93355 0.91610 0.92683 0.87422 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.28 71.98 0.74 -1.82 16 2 C 0.05 0.92 6.50 71.98 0.47 1.39 16 3 O -0.40 -10.29 10.28 -148.98 -1.53 -11.82 16 4 C 0.07 1.37 4.37 31.12 0.14 1.51 16 5 C -0.12 -2.26 7.47 31.12 0.23 -2.03 16 6 C -0.10 -2.73 3.09 -10.27 -0.03 -2.76 16 7 C -0.11 -3.12 4.09 29.85 0.12 -3.00 16 8 C 0.49 20.73 7.67 87.66 0.67 21.41 16 9 O -0.61 -32.79 15.08 -3.03 -0.05 -32.83 16 10 N -0.61 -26.24 2.75 -826.80 -2.28 -28.52 16 11 C 0.08 2.47 9.24 127.77 1.18 3.65 16 12 C 0.26 14.05 2.64 44.25 0.12 14.16 16 13 H 0.00 0.16 6.90 -2.39 -0.02 0.14 16 14 C -0.13 -6.50 8.97 71.98 0.65 -5.86 16 15 C -0.54 -30.07 7.99 25.60 0.20 -29.87 16 16 H 0.06 3.34 7.33 -2.91 -0.02 3.32 16 17 C 0.01 0.65 5.30 84.66 0.45 1.10 16 18 N -0.92 -54.57 11.32 21.45 0.24 -54.32 16 19 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C -0.16 -4.06 7.47 31.12 0.23 -3.83 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.49 7.87 -2.39 -0.02 1.47 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.13 1.54 8.10 -2.38 -0.02 1.52 16 32 H 0.06 2.13 7.67 -2.38 -0.02 2.12 16 33 H 0.11 2.54 7.40 -2.38 -0.02 2.52 16 34 H 0.12 2.47 7.81 -2.39 -0.02 2.45 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.14 6.44 -2.38 -0.02 2.12 16 37 H 0.06 2.22 7.02 -2.39 -0.02 2.20 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 2.16 7.67 -2.39 -0.02 2.15 16 40 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 41 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.11 2.26 7.90 -2.39 -0.02 2.24 16 43 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -76.41 345.12 4.55 -71.86 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.96 Total: 15.60 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 5.17 Total: -5.94 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.03 Total: -82.84 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.58 Total: -44.65 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -76.41 4.55 -71.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188652692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.817 kcal (2) G-P(sol) polarization free energy of solvation -76.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds